Wall clock time and date at job start Sun Mar 7 2021 07:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47517 * 59.99934 * 6 4 3 8 8 C 1.52999 * 109.47248 * 180.02562 * 6 4 3 9 9 C 1.53000 * 109.47278 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47098 * 300.00128 * 9 8 6 11 11 H 1.08995 * 109.47554 * 299.99526 * 10 9 8 12 12 C 1.53000 * 109.47098 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47590 * 174.99985 * 12 10 9 14 14 C 1.34777 * 120.00482 * 179.97438 * 13 12 10 15 15 O 1.21690 * 119.99970 * 359.97438 * 14 13 12 16 16 C 1.46677 * 120.00040 * 180.02562 * 14 13 12 17 17 C 1.37874 * 126.23437 * 179.71815 * 16 14 13 18 18 C 1.39830 * 107.08673 * 179.84083 * 17 16 14 19 19 C 1.50696 * 126.07041 * 180.17401 * 18 17 16 20 20 O 1.42901 * 109.47515 * 300.31090 * 19 18 17 21 21 Si 1.86305 * 109.47514 * 180.30846 * 19 18 17 22 22 C 1.35455 * 107.86537 * 0.41733 * 18 17 16 23 23 N 1.35530 * 108.87288 * 359.73949 * 22 18 17 24 24 C 1.52992 * 109.47278 * 60.00016 * 10 9 8 25 25 C 1.53000 * 109.47241 * 299.99973 * 6 4 3 26 26 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 31 31 H 1.08998 * 109.47295 * 300.00082 * 8 6 4 32 32 H 1.09004 * 109.47225 * 60.00231 * 8 6 4 33 33 H 1.09001 * 109.47296 * 59.99891 * 9 8 6 34 34 H 1.08998 * 109.47218 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47293 * 294.99905 * 12 10 9 36 36 H 1.09000 * 109.47656 * 54.99726 * 12 10 9 37 37 H 0.97002 * 119.99553 * 0.02562 * 13 12 10 38 38 H 1.08002 * 126.45524 * 359.96059 * 17 16 14 39 39 H 1.09002 * 109.47069 * 60.30578 * 19 18 17 40 40 H 0.96706 * 113.99976 * 300.00140 * 20 19 18 41 41 H 1.48500 * 109.99657 * 58.68240 * 21 19 18 42 42 H 1.48497 * 109.99691 * 180.02562 * 21 19 18 43 43 H 1.07994 * 125.56492 * 179.69832 * 22 18 17 44 44 H 0.96998 * 125.68464 * 180.02562 * 23 22 18 45 45 H 1.09001 * 109.47605 * 59.99905 * 24 10 9 46 46 H 1.08998 * 109.47412 * 179.97438 * 24 10 9 47 47 H 1.09005 * 109.47326 * 300.00399 * 25 6 4 48 48 H 1.09003 * 109.46945 * 60.00367 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5844 3.4694 0.8912 8 6 5.4485 2.8575 0.0010 9 6 6.0333 4.2713 0.0010 10 6 5.5616 5.0183 -1.2482 11 1 5.8975 4.4863 -2.1382 12 6 6.1469 6.4319 -1.2485 13 7 5.7940 7.1063 -2.5002 14 6 6.2042 8.3706 -2.7235 15 8 6.8674 8.9521 -1.8850 16 6 5.8504 9.0460 -3.9765 17 6 6.1950 10.3320 -4.3346 18 6 5.6563 10.5633 -5.6041 19 6 5.7803 11.8356 -6.4022 20 8 5.2075 12.9179 -5.6655 21 14 4.8810 11.6425 -8.0224 22 6 4.9986 9.4428 -5.9869 23 7 5.1090 8.5132 -5.0068 24 6 4.0338 5.0983 -1.2480 25 6 3.4495 3.6848 -1.2480 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 5.7846 2.3249 0.8907 32 1 5.7845 2.3258 -0.8893 33 1 5.6974 4.8035 0.8910 34 1 7.1218 4.2143 0.0014 35 1 5.7415 6.9932 -0.4066 36 1 7.2318 6.3761 -1.1592 37 1 5.2645 6.6432 -3.1680 38 1 6.7737 11.0287 -3.7463 39 1 6.8331 12.0433 -6.5934 40 1 4.2700 12.8006 -5.4592 41 1 3.4510 11.3276 -7.7751 42 1 4.9964 12.8904 -8.8190 43 1 4.4716 9.3117 -6.9203 44 1 4.7291 7.6210 -5.0278 45 1 3.6978 5.6304 -0.3580 46 1 3.6977 5.6309 -2.1377 47 1 3.7857 3.1529 -2.1381 48 1 2.3610 3.7419 -1.2484 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_10543058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:00 Heat of formation + Delta-G solvation = -129.492202 kcal Electronic energy + Delta-G solvation = -28705.740493 eV Core-core repulsion = 24534.067326 eV Total energy + Delta-G solvation = -4171.673167 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.45687 -41.83731 -40.50489 -39.38402 -37.79369 -37.74283 -36.02884 -33.30026 -32.62695 -32.16132 -31.76004 -30.69435 -27.87370 -26.33774 -24.87213 -23.91373 -23.69082 -22.96999 -21.66039 -21.24809 -20.88574 -20.60950 -19.93752 -18.74550 -17.70807 -17.68265 -17.55800 -17.15602 -16.69545 -16.68321 -16.16041 -15.83955 -15.63194 -15.32784 -15.12579 -14.92226 -14.77845 -14.68007 -14.47561 -14.41705 -13.87092 -13.83655 -13.69677 -13.53828 -13.43443 -13.26355 -13.01264 -12.90694 -12.57581 -12.44053 -12.27496 -12.12586 -11.89538 -11.80893 -11.59543 -11.48200 -11.39367 -11.16678 -11.10987 -10.50456 -10.28246 -9.92439 -9.26831 -4.83235 0.38105 1.09246 1.39200 1.59417 1.62996 1.70019 1.95645 2.11019 2.17612 2.27951 3.40337 3.55628 3.56870 3.64230 3.80627 3.84804 3.94081 3.96330 4.00518 4.02406 4.13324 4.19522 4.26173 4.30423 4.36951 4.39283 4.43708 4.48970 4.63832 4.69733 4.75723 4.80606 4.82318 4.87375 4.92583 4.95223 5.04195 5.06811 5.09727 5.11214 5.15193 5.20100 5.26684 5.32633 5.42831 5.48641 5.60045 5.74889 6.36592 6.53510 6.64200 6.65201 7.07337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.091 4.091 11 H 0.090 0.910 12 C 0.125 3.875 13 N -0.712 5.712 14 C 0.586 3.414 15 O -0.578 6.578 16 C -0.069 4.069 17 C -0.106 4.106 18 C -0.225 4.225 19 C -0.062 4.062 20 O -0.558 6.558 21 Si 0.790 3.210 22 C 0.061 3.939 23 N -0.514 5.514 24 C -0.110 4.110 25 C -0.104 4.104 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.411 0.589 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.384 0.616 41 H -0.269 1.269 42 H -0.315 1.315 43 H 0.215 0.785 44 H 0.437 0.563 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -5.434 -5.047 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.375 3.625 15 O -0.458 6.458 16 C -0.182 4.182 17 C -0.133 4.133 18 C -0.232 4.232 19 C -0.170 4.170 20 O -0.366 6.366 21 Si 0.694 3.306 22 C -0.077 4.077 23 N -0.112 5.112 24 C -0.147 4.147 25 C -0.141 4.141 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.233 0.767 41 H -0.194 1.194 42 H -0.244 1.244 43 H 0.232 0.768 44 H 0.279 0.721 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.537 -5.055 -4.911 8.962 hybrid contribution -0.592 -0.176 1.076 1.240 sum -6.128 -5.230 -3.835 8.923 Atomic orbital electron populations 1.21820 0.90655 1.04228 1.03772 1.23230 0.96933 0.79499 1.02334 1.86517 1.24372 1.33295 1.83491 1.24429 0.80484 0.93451 0.70924 1.90669 1.61161 1.44592 1.46837 1.21270 0.96587 0.88121 1.03647 0.85852 1.21377 0.91570 0.97663 1.03059 1.21479 1.01167 0.93977 0.97939 1.21387 0.96123 0.93322 1.00142 0.89191 1.21443 1.00058 0.92701 0.85583 1.45711 1.55654 1.13405 1.21606 1.17250 0.78878 0.81602 0.84763 1.90855 1.41355 1.66700 1.46901 1.20123 1.09418 0.96288 0.92350 1.21212 1.01243 0.94163 0.96669 1.19883 1.07959 0.97910 0.97420 1.24772 1.04739 0.83886 1.03562 1.86569 1.30029 1.44150 1.75848 0.94323 0.78262 0.84071 0.73960 1.22364 1.02029 0.88209 0.95111 1.41845 1.40518 1.15467 1.13334 1.21601 0.93582 0.95710 1.03802 1.21488 1.01776 0.95731 0.95143 0.91334 0.91053 0.88678 0.91722 0.91435 0.91837 0.91636 0.90558 0.90614 0.91798 0.92069 0.75192 0.85992 0.87423 0.76687 1.19435 1.24357 0.76818 0.72123 0.90896 0.89838 0.91126 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 10.29 71.98 0.74 1.42 16 2 C 0.05 0.01 6.19 71.98 0.45 0.45 16 3 O -0.36 -0.76 10.12 -51.42 -0.52 -1.28 16 4 C 0.46 1.44 7.26 71.24 0.52 1.96 16 5 O -0.54 -5.42 15.73 21.98 0.35 -5.08 16 6 C -0.08 0.29 2.63 -11.54 -0.03 0.26 16 7 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 8 C -0.10 0.31 4.49 30.59 0.14 0.44 16 9 C -0.11 0.68 5.20 30.59 0.16 0.84 16 10 C -0.09 0.76 2.22 -10.80 -0.02 0.73 16 11 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 12 C 0.13 -0.45 5.07 86.38 0.44 -0.01 16 13 N -0.71 2.90 5.28 -467.09 -2.47 0.43 16 14 C 0.59 2.81 7.79 86.45 0.67 3.48 16 15 O -0.58 -8.74 16.88 -4.32 -0.07 -8.82 16 16 C -0.07 -0.12 7.06 40.35 0.28 0.17 16 17 C -0.11 -0.62 10.59 22.57 0.24 -0.38 16 18 C -0.23 0.04 5.44 -20.12 -0.11 -0.07 16 19 C -0.06 -0.01 3.02 71.23 0.22 0.21 16 20 O -0.56 -2.75 12.88 -148.98 -1.92 -4.66 16 21 Si 0.79 -3.76 30.59 68.60 2.10 -1.67 16 22 C 0.06 -0.45 10.45 83.48 0.87 0.43 16 23 N -0.51 3.98 5.99 -183.62 -1.10 2.88 16 24 C -0.11 1.09 5.08 30.58 0.16 1.24 16 25 C -0.10 0.80 5.13 30.58 0.16 0.96 16 26 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 30 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 31 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 32 H 0.06 -0.08 8.10 -2.38 -0.02 -0.09 16 33 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.41 -4.72 6.78 -92.71 -0.63 -5.35 16 38 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 40 H 0.38 -0.55 8.70 -74.05 -0.64 -1.20 16 41 H -0.27 0.86 7.11 99.48 0.71 1.57 16 42 H -0.31 -1.52 7.11 99.48 0.71 -0.81 16 43 H 0.22 -3.28 6.19 -2.91 -0.02 -3.30 16 44 H 0.44 -6.91 8.19 -92.71 -0.76 -7.67 16 45 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.08 -1.06 7.18 -2.39 -0.02 -1.08 16 47 H 0.07 -0.52 8.14 -2.38 -0.02 -0.54 16 48 H 0.08 -0.65 8.11 -2.39 -0.02 -0.67 16 Total: 0.00 -28.94 392.78 0.23 -28.71 By element: Atomic # 1 Polarization: -21.64 SS G_CDS: -1.01 Total: -22.65 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 4.87 Total: 12.13 kcal Atomic # 7 Polarization: 6.88 SS G_CDS: -3.57 Total: 3.31 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -2.17 Total: -19.84 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.10 Total: -1.67 kcal Total: -28.94 0.23 -28.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_10543058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.784 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds