Wall clock time and date at job start Sun Mar 7 2021 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46465 * 2 1 4 4 C 1.34233 * 116.99536 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99981 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99714 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47706 * 300.00434 * 6 4 3 8 8 C 1.52996 * 109.47048 * 60.00822 * 6 4 3 9 9 C 1.53009 * 109.47095 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.46797 * 299.99712 * 9 8 6 11 11 H 1.08999 * 109.47734 * 299.99556 * 10 9 8 12 12 C 1.53009 * 109.46797 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.46960 * 65.00126 * 12 10 9 14 14 C 1.34779 * 119.99773 * 179.72184 * 13 12 10 15 15 O 1.21694 * 119.99653 * 354.51824 * 14 13 12 16 16 C 1.46670 * 119.99996 * 174.50913 * 14 13 12 17 17 C 1.37874 * 126.23222 * 4.68343 * 16 14 13 18 18 C 1.39835 * 107.08681 * 179.84354 * 17 16 14 19 19 C 1.50702 * 126.06910 * 180.15941 * 18 17 16 20 20 O 1.42894 * 109.47165 * 120.30847 * 19 18 17 21 21 Si 1.86291 * 109.47270 * 0.30257 * 19 18 17 22 22 C 1.35454 * 107.86210 * 0.41788 * 18 17 16 23 23 N 1.35532 * 108.87147 * 359.74244 * 22 18 17 24 24 C 1.46498 * 125.67817 * 179.97438 * 23 22 18 25 25 C 1.52999 * 109.47559 * 60.00400 * 10 9 8 26 26 C 1.53007 * 109.46755 * 180.02562 * 6 4 3 27 27 H 1.08997 * 109.47362 * 60.00175 * 1 2 3 28 28 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47483 * 299.99556 * 1 2 3 30 30 H 1.08992 * 109.47247 * 240.00033 * 2 1 3 31 31 H 1.09002 * 109.46862 * 119.99320 * 2 1 3 32 32 H 1.08996 * 109.46873 * 299.99315 * 8 6 4 33 33 H 1.08997 * 109.47676 * 59.99485 * 8 6 4 34 34 H 1.09000 * 109.46649 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46616 * 59.99952 * 9 8 6 36 36 H 1.08997 * 109.47107 * 304.99951 * 12 10 9 37 37 H 1.09005 * 109.46637 * 185.00009 * 12 10 9 38 38 H 0.96998 * 120.00095 * 0.02562 * 13 12 10 39 39 H 1.07999 * 126.45847 * 359.97438 * 17 16 14 40 40 H 1.09003 * 109.46583 * 240.30579 * 19 18 17 41 41 H 0.96699 * 114.00218 * 299.99945 * 20 19 18 42 42 H 1.48507 * 109.99738 * 58.68413 * 21 19 18 43 43 H 1.48497 * 109.99968 * 179.97438 * 21 19 18 44 44 H 1.08001 * 125.56538 * 179.75827 * 22 18 17 45 45 H 1.09006 * 109.46904 * 264.34792 * 24 23 22 46 46 H 1.09000 * 109.47422 * 24.34212 * 24 23 22 47 47 H 1.08998 * 109.47668 * 144.34840 * 24 23 22 48 48 H 1.08999 * 109.47287 * 59.98882 * 25 10 9 49 49 H 1.08996 * 109.47370 * 180.02562 * 25 10 9 50 50 H 1.08997 * 109.46835 * 60.00427 * 26 6 4 51 51 H 1.08997 * 109.46923 * 299.99874 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9375 0.0000 7 1 3.5849 3.4692 -0.8904 8 6 3.4484 3.6851 1.2486 9 6 4.0337 5.0988 1.2484 10 6 5.5615 5.0183 1.2494 11 1 5.8968 4.4865 2.1398 12 6 6.1467 6.4320 1.2485 13 7 5.7934 7.1075 2.4996 14 6 6.2087 8.3699 2.7243 15 8 6.9589 8.9132 1.9351 16 6 5.7562 9.0888 3.9200 17 6 4.9845 8.5715 4.9387 18 6 4.7945 9.5960 5.8712 19 6 4.0144 9.4926 7.1564 20 8 4.8749 9.7801 8.2604 21 14 3.3335 7.7675 7.3325 22 6 5.4314 10.6996 5.4114 23 7 6.0196 10.4046 4.2266 24 6 6.8047 11.3319 3.4082 25 6 6.0337 4.2707 0.0007 26 6 5.4485 2.8575 0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.3600 3.7421 1.2481 33 1 3.7840 3.1535 2.1390 34 1 3.6969 5.6315 2.1378 35 1 3.6983 5.6306 0.3580 36 1 5.7416 6.9924 0.4060 37 1 7.2317 6.3760 1.1596 38 1 5.2644 6.6447 3.1680 39 1 4.6009 7.5641 5.0051 40 1 3.1920 10.2079 7.1407 41 1 5.6306 9.1816 8.3364 42 1 4.4429 6.7803 7.3231 43 1 2.5626 7.6524 8.5964 44 1 5.4651 11.6580 5.9081 45 1 6.1648 11.7733 2.6441 46 1 7.2114 12.1205 4.0413 47 1 7.6220 10.7920 2.9300 48 1 5.6983 4.8025 -0.8897 49 1 7.1221 4.2129 0.0017 50 1 5.7844 2.3251 -0.8896 51 1 5.7843 2.3258 0.8903 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_10803934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:03 Heat of formation + Delta-G solvation = -121.633614 kcal Electronic energy + Delta-G solvation = -31184.665150 eV Core-core repulsion = 26857.795138 eV Total energy + Delta-G solvation = -4326.870012 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.52424 -41.79166 -40.43655 -39.31100 -37.82564 -37.68612 -35.99198 -34.05096 -33.11119 -32.31695 -31.69963 -30.63455 -28.51482 -27.46678 -25.67358 -24.77403 -23.77060 -23.56769 -22.84001 -21.59610 -21.09971 -20.81574 -20.46799 -19.04089 -18.70044 -17.64529 -17.56551 -17.41213 -17.08202 -16.85251 -16.57123 -16.23082 -15.82257 -15.54557 -15.37254 -15.18809 -15.09354 -14.93864 -14.72059 -14.58600 -14.45286 -13.92867 -13.84855 -13.68188 -13.65022 -13.47871 -13.21501 -13.15789 -13.10938 -12.95426 -12.85432 -12.53829 -12.32350 -12.20182 -12.05879 -11.83355 -11.80744 -11.55534 -11.40316 -11.20685 -11.08178 -11.00340 -10.50681 -10.16885 -9.72634 -9.20350 -4.81661 0.43072 1.13629 1.41974 1.58581 1.64684 1.67493 1.75700 2.08111 2.30864 2.37464 3.46191 3.55381 3.62843 3.69899 3.73278 3.89580 3.90602 3.97707 4.02486 4.05932 4.07920 4.20221 4.23000 4.31122 4.34804 4.35099 4.42376 4.43931 4.50488 4.56022 4.68668 4.70044 4.74753 4.76606 4.78759 4.84812 4.89547 4.91096 5.01648 5.12740 5.14446 5.15173 5.16723 5.22822 5.27979 5.35480 5.41073 5.47391 5.55540 5.70635 5.93570 6.17465 6.50409 6.61971 6.69441 7.15390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.544 6.544 6 C -0.077 4.077 7 H 0.126 0.874 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.093 4.093 11 H 0.086 0.914 12 C 0.130 3.870 13 N -0.704 5.704 14 C 0.585 3.415 15 O -0.586 6.586 16 C -0.074 4.074 17 C -0.125 4.125 18 C -0.215 4.215 19 C -0.048 4.048 20 O -0.554 6.554 21 Si 0.774 3.226 22 C 0.046 3.954 23 N -0.416 5.416 24 C 0.066 3.934 25 C -0.106 4.106 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.172 0.828 40 H 0.119 0.881 41 H 0.384 0.616 42 H -0.281 1.281 43 H -0.311 1.311 44 H 0.186 0.814 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 0.475 -0.813 4.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.434 6.434 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.112 4.112 11 H 0.104 0.896 12 C 0.007 3.993 13 N -0.356 5.356 14 C 0.374 3.626 15 O -0.468 6.468 16 C -0.186 4.186 17 C -0.151 4.151 18 C -0.222 4.222 19 C -0.158 4.158 20 O -0.362 6.362 21 Si 0.680 3.320 22 C -0.091 4.091 23 N -0.088 5.088 24 C -0.075 4.075 25 C -0.144 4.144 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.189 0.811 40 H 0.137 0.863 41 H 0.233 0.767 42 H -0.207 1.207 43 H -0.239 1.239 44 H 0.203 0.797 45 H 0.099 0.901 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.224 0.500 -1.106 4.395 hybrid contribution 1.195 -0.330 0.703 1.425 sum -3.029 0.170 -0.403 3.061 Atomic orbital electron populations 1.21818 0.90633 1.04180 1.03831 1.23220 0.96954 0.79562 1.02257 1.86520 1.24357 1.33200 1.83480 1.24472 0.80479 0.93503 0.70857 1.90669 1.61194 1.44648 1.46929 1.21276 0.96460 0.88051 1.03776 0.85656 1.21512 1.01931 0.95851 0.94967 1.21630 0.93339 0.95655 1.04168 1.21403 0.96409 0.93438 0.99966 0.89554 1.21424 0.99917 0.92616 0.85386 1.45553 1.55396 1.13115 1.21544 1.17160 0.79583 0.82111 0.83727 1.90793 1.37822 1.68920 1.49307 1.20063 1.11571 0.86705 1.00310 1.21450 1.00183 1.00154 0.93307 1.19809 1.08189 0.94423 0.99732 1.24533 0.94860 1.14047 0.82353 1.86548 1.41519 1.58908 1.49192 0.94167 0.81218 0.72610 0.84047 1.22255 0.98829 1.01277 0.86714 1.44092 1.38347 1.09053 1.17290 1.22335 0.96268 0.93019 0.95859 1.21462 1.01005 0.93927 0.98019 1.21373 0.91723 0.97752 1.02892 0.91262 0.88770 0.91010 0.91756 0.91551 0.89598 0.91391 0.89467 0.90543 0.91396 0.92268 0.74653 0.81082 0.86309 0.76719 1.20706 1.23941 0.79723 0.90076 0.87441 0.89852 0.90327 0.90801 0.91890 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.88 10.12 -51.45 -0.52 -1.40 16 4 C 0.46 1.65 7.25 71.23 0.52 2.17 16 5 O -0.54 -5.76 15.73 21.96 0.35 -5.42 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.23 16 7 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 8 C -0.11 0.75 5.14 30.60 0.16 0.91 16 9 C -0.11 1.06 5.08 30.60 0.16 1.21 16 10 C -0.09 0.73 2.23 -10.79 -0.02 0.70 16 11 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 12 C 0.13 -0.49 5.07 86.38 0.44 -0.05 16 13 N -0.70 2.20 5.27 -467.06 -2.46 -0.26 16 14 C 0.59 2.37 7.77 86.44 0.67 3.04 16 15 O -0.59 -6.61 14.78 -4.33 -0.06 -6.67 16 16 C -0.07 -0.17 6.89 40.35 0.28 0.11 16 17 C -0.12 0.26 8.84 22.57 0.20 0.45 16 18 C -0.22 0.21 5.41 -20.12 -0.11 0.11 16 19 C -0.05 0.09 3.00 71.24 0.21 0.30 16 20 O -0.55 -0.93 12.87 -148.98 -1.92 -2.85 16 21 Si 0.77 -2.71 30.64 68.60 2.10 -0.60 16 22 C 0.05 -0.01 11.27 83.48 0.94 0.93 16 23 N -0.42 -0.80 3.16 -534.32 -1.69 -2.49 16 24 C 0.07 -0.03 10.48 127.77 1.34 1.31 16 25 C -0.11 0.66 5.20 30.58 0.16 0.82 16 26 C -0.10 0.26 4.49 30.58 0.14 0.40 16 27 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 29 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.06 0.10 8.13 -2.39 -0.02 0.08 16 31 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 32 H 0.09 -0.64 8.11 -2.39 -0.02 -0.66 16 33 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.09 -1.05 7.18 -2.39 -0.02 -1.06 16 35 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 38 H 0.42 -3.60 6.56 -92.71 -0.61 -4.21 16 39 H 0.17 -1.42 5.77 -2.91 -0.02 -1.43 16 40 H 0.12 -0.39 7.96 -2.39 -0.02 -0.40 16 41 H 0.38 -1.26 8.70 -74.06 -0.64 -1.91 16 42 H -0.28 0.01 7.11 99.48 0.71 0.71 16 43 H -0.31 -1.55 7.11 99.48 0.71 -0.85 16 44 H 0.19 -0.71 8.06 -2.91 -0.02 -0.74 16 45 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 46 H 0.11 -0.59 8.12 -2.39 -0.02 -0.61 16 47 H 0.08 0.31 6.55 -2.39 -0.02 0.29 16 48 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 49 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 50 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 51 H 0.06 -0.01 8.10 -2.39 -0.02 -0.03 16 Total: 0.00 -23.15 411.19 1.74 -21.41 By element: Atomic # 1 Polarization: -15.93 SS G_CDS: -0.28 Total: -16.21 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.23 Total: 14.49 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -4.15 Total: -2.74 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -2.16 Total: -16.34 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.10 Total: -0.60 kcal Total: -23.15 1.74 -21.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_10803934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.225 kcal (2) G-P(sol) polarization free energy of solvation -23.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds