Wall clock time and date at job start Sun Mar 7 2021 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99505 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47518 * 300.00344 * 6 4 3 8 8 C 1.53002 * 109.46783 * 60.00307 * 6 4 3 9 9 C 1.52997 * 109.46817 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47452 * 300.00239 * 9 8 6 11 11 H 1.09002 * 109.46935 * 300.00125 * 10 9 8 12 12 C 1.53002 * 109.47197 * 180.02562 * 10 9 8 13 13 N 1.46504 * 109.46806 * 175.00000 * 12 10 9 14 14 C 1.34771 * 119.99571 * 180.02562 * 13 12 10 15 15 O 1.21716 * 120.00606 * 359.97438 * 14 13 12 16 16 C 1.46573 * 119.99808 * 180.02562 * 14 13 12 17 17 C 1.40849 * 126.57846 * 179.97438 * 16 14 13 18 18 C 1.40089 * 132.86850 * 359.92394 * 17 16 14 19 19 C 1.36451 * 119.25642 * 179.97438 * 18 17 16 20 20 C 1.50704 * 120.29927 * 180.02562 * 19 18 17 21 21 O 1.42905 * 109.46999 * 240.04855 * 20 19 18 22 22 Si 1.86293 * 109.47322 * 120.04546 * 20 19 18 23 23 C 1.40160 * 119.41000 * 0.10884 * 19 18 17 24 24 C 1.35193 * 120.31723 * 359.92132 * 23 19 18 25 25 N 1.36237 * 120.70474 * 0.02562 * 24 23 19 26 26 N 1.40019 * 132.01272 * 180.02562 * 25 24 23 27 27 C 1.30743 * 109.60308 * 179.75054 * 26 25 24 28 28 C 1.52999 * 109.47159 * 59.99536 * 10 9 8 29 29 C 1.52997 * 109.47317 * 300.00546 * 28 10 9 30 30 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 31 31 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 33 33 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 34 34 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 35 35 H 1.08993 * 109.47662 * 299.99813 * 8 6 4 36 36 H 1.09002 * 109.47075 * 60.00319 * 8 6 4 37 37 H 1.09002 * 109.47153 * 60.00231 * 9 8 6 38 38 H 1.09001 * 109.47289 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.46791 * 294.99945 * 12 10 9 40 40 H 1.08998 * 109.47254 * 54.99840 * 12 10 9 41 41 H 0.96997 * 119.99996 * 359.97438 * 13 12 10 42 42 H 1.07999 * 120.37181 * 0.03852 * 18 17 16 43 43 H 1.08999 * 109.46899 * 0.04513 * 20 19 18 44 44 H 0.96705 * 113.99325 * 179.97438 * 21 20 19 45 45 H 1.48501 * 109.99839 * 60.00002 * 22 20 19 46 46 H 1.48500 * 110.00138 * 181.32091 * 22 20 19 47 47 H 1.07996 * 119.84535 * 179.97438 * 23 19 18 48 48 H 1.08004 * 119.64712 * 180.02562 * 24 23 19 49 49 H 1.08001 * 125.62459 * 180.22494 * 27 26 25 50 50 H 1.08996 * 109.46929 * 179.97438 * 28 10 9 51 51 H 1.09002 * 109.46716 * 60.00455 * 28 10 9 52 52 H 1.09002 * 109.47153 * 299.99641 * 29 28 10 53 53 H 1.09001 * 109.46832 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0337 5.0987 1.2484 10 6 5.5616 5.0183 1.2494 11 1 5.8969 4.4864 2.1398 12 6 6.1468 6.4320 1.2498 13 7 7.6049 6.3569 1.3711 14 6 8.3382 7.4873 1.3936 15 8 7.7893 8.5707 1.3127 16 6 9.7970 7.4122 1.5144 17 6 10.6932 8.4982 1.5510 18 6 10.5121 9.8859 1.4889 19 6 11.6022 10.7042 1.5512 20 6 11.4344 12.2005 1.4870 21 8 12.1433 12.7113 0.3562 22 14 12.1115 12.9686 3.0433 23 6 12.8797 10.1407 1.6735 24 6 13.0309 8.7985 1.7309 25 7 11.9485 7.9733 1.6707 26 7 11.8301 6.5787 1.7085 27 6 10.5694 6.2430 1.6224 28 6 6.0338 4.2706 0.0008 29 6 5.4485 2.8570 0.0010 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3600 3.7421 1.2482 36 1 3.7841 3.1535 2.1391 37 1 3.6984 5.6306 0.3580 38 1 3.6977 5.6312 2.1382 39 1 5.8850 6.9338 0.3183 40 1 5.7406 6.9931 2.0913 41 1 8.0423 5.4936 1.4360 42 1 9.5206 10.3035 1.3939 43 1 10.3761 12.4437 1.3926 44 1 12.0787 13.6706 0.2521 45 1 13.5539 12.6444 3.1837 46 1 11.9232 14.4412 3.0065 47 1 13.7474 10.7818 1.7229 48 1 14.0203 8.3759 1.8256 49 1 10.1852 5.2337 1.6302 50 1 7.1222 4.2137 0.0013 51 1 5.6985 4.8025 -0.8896 52 1 5.7838 2.3251 0.8915 53 1 5.7846 2.3245 -0.8887 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_11618758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:10 Heat of formation + Delta-G solvation = -64.121072 kcal Electronic energy + Delta-G solvation = -35100.418452 eV Core-core repulsion = 30325.938039 eV Total energy + Delta-G solvation = -4774.480413 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.30159 -41.80835 -40.55203 -39.40438 -39.10634 -37.70396 -37.37424 -35.80756 -34.28528 -33.05088 -32.31013 -32.16354 -31.68935 -30.33482 -27.85261 -26.94209 -25.08391 -24.54939 -23.89185 -23.43659 -23.14139 -22.67819 -21.61593 -21.17190 -20.65083 -19.19532 -18.71297 -18.51573 -17.97199 -17.65980 -17.63325 -17.45694 -16.96968 -16.86134 -16.56272 -16.23488 -15.91048 -15.67328 -15.55957 -15.20325 -15.03673 -14.98865 -14.62127 -14.49318 -14.42410 -14.13422 -14.01576 -13.82364 -13.63959 -13.45640 -13.28736 -13.17295 -13.02850 -13.00283 -12.91411 -12.67375 -12.52942 -12.17283 -12.13015 -12.06555 -11.94755 -11.79008 -11.60542 -11.56720 -11.39956 -11.22021 -11.04703 -10.89464 -10.83625 -10.24548 -10.02876 -8.78235 -4.89562 -0.57528 -0.12275 1.02154 1.05171 1.12088 1.22256 1.61383 1.66332 1.87551 2.06642 2.31081 2.52221 3.02222 3.18526 3.45881 3.51082 3.64200 3.66240 3.68963 3.71803 3.87688 3.89678 3.96217 4.00751 4.04034 4.07689 4.16959 4.22061 4.29587 4.33251 4.35099 4.42196 4.44093 4.52589 4.54932 4.58344 4.74319 4.75795 4.79688 4.88099 4.89322 4.91532 5.00147 5.11805 5.12966 5.13571 5.16047 5.16801 5.23599 5.26691 5.28981 5.38328 5.45177 5.50118 5.59799 5.65400 6.29657 6.53646 6.65289 6.67922 7.34819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.104 4.104 9 C -0.107 4.107 10 C -0.092 4.092 11 H 0.088 0.912 12 C 0.130 3.870 13 N -0.714 5.714 14 C 0.599 3.401 15 O -0.590 6.590 16 C -0.337 4.337 17 C 0.151 3.849 18 C -0.110 4.110 19 C -0.020 4.020 20 C -0.086 4.086 21 O -0.551 6.551 22 Si 0.764 3.236 23 C -0.147 4.147 24 C 0.112 3.888 25 N -0.274 5.274 26 N -0.341 5.341 27 C 0.130 3.870 28 C -0.110 4.110 29 C -0.100 4.100 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.411 0.589 42 H 0.158 0.842 43 H 0.095 0.905 44 H 0.400 0.600 45 H -0.275 1.275 46 H -0.275 1.275 47 H 0.176 0.824 48 H 0.202 0.798 49 H 0.234 0.766 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.066 0.934 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 1.605 2.503 3.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.111 4.111 11 H 0.106 0.894 12 C 0.007 3.993 13 N -0.366 5.366 14 C 0.388 3.612 15 O -0.472 6.472 16 C -0.352 4.352 17 C 0.030 3.970 18 C -0.130 4.130 19 C -0.026 4.026 20 C -0.194 4.194 21 O -0.362 6.362 22 Si 0.664 3.336 23 C -0.168 4.168 24 C -0.014 4.014 25 N -0.037 5.037 26 N -0.161 5.161 27 C -0.051 4.051 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.248 0.752 42 H 0.175 0.825 43 H 0.113 0.887 44 H 0.252 0.748 45 H -0.201 1.201 46 H -0.200 1.200 47 H 0.193 0.807 48 H 0.219 0.781 49 H 0.250 0.750 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.085 0.915 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.204 1.365 2.813 3.133 hybrid contribution -0.420 0.116 -1.258 1.331 sum -0.625 1.481 1.555 2.237 Atomic orbital electron populations 1.21820 0.90681 1.04215 1.03767 1.23229 0.96932 0.79521 1.02317 1.86522 1.24445 1.33286 1.83494 1.24455 0.80462 0.93495 0.70889 1.90661 1.61136 1.44564 1.46870 1.21279 0.96833 0.88018 1.03459 0.85815 1.21480 1.01717 0.95811 0.95111 1.21482 0.93303 0.95735 1.03930 1.21396 0.96209 0.93895 0.99591 0.89386 1.21374 0.78660 0.97457 1.01833 1.45600 1.07678 1.08412 1.74927 1.16943 0.85065 0.84022 0.75161 1.90750 1.73624 1.29482 1.53364 1.19723 0.93801 0.91775 1.29865 1.19544 0.85500 0.94419 0.97586 1.20647 1.01237 0.88781 1.02326 1.19601 0.92792 0.95358 0.94865 1.24945 1.01687 0.92594 1.00159 1.86528 1.75003 1.29055 1.45606 0.93514 0.80609 0.78418 0.81059 1.21036 0.99057 0.93150 1.03523 1.22102 0.91735 0.89207 0.98362 1.46285 1.05915 1.06557 1.44983 1.77575 1.20843 0.85709 1.31981 1.24605 0.88844 1.00469 0.91163 1.21601 1.01116 0.93857 0.98125 1.21400 0.91398 0.97924 1.03021 0.91269 0.88660 0.91150 0.91637 0.91515 0.89928 0.91524 0.90434 0.90085 0.92067 0.91877 0.75190 0.82461 0.88652 0.74829 1.20068 1.20031 0.80683 0.78118 0.74984 0.90337 0.91002 0.91525 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.29 10.12 -51.40 -0.52 -1.81 16 4 C 0.46 2.06 7.25 71.24 0.52 2.58 16 5 O -0.54 -5.95 15.73 21.99 0.35 -5.61 16 6 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.12 -0.62 8.14 -2.39 -0.02 -0.64 16 8 C -0.10 0.51 5.14 30.59 0.16 0.67 16 9 C -0.11 0.74 5.20 30.60 0.16 0.90 16 10 C -0.09 0.61 2.22 -10.79 -0.02 0.58 16 11 H 0.09 -0.65 8.14 -2.39 -0.02 -0.66 16 12 C 0.13 -0.30 5.07 86.38 0.44 0.14 16 13 N -0.71 0.83 5.27 -467.16 -2.46 -1.63 16 14 C 0.60 3.95 7.78 86.42 0.67 4.62 16 15 O -0.59 -8.07 15.70 -4.40 -0.07 -8.14 16 16 C -0.34 -1.99 6.17 -19.90 -0.12 -2.11 16 17 C 0.15 1.11 6.76 39.49 0.27 1.38 16 18 C -0.11 -0.56 9.35 22.30 0.21 -0.36 16 19 C -0.02 -0.03 4.53 -19.81 -0.09 -0.12 16 20 C -0.09 0.21 2.81 71.24 0.20 0.41 16 21 O -0.55 0.40 12.76 -148.98 -1.90 -1.51 16 22 Si 0.76 -3.53 31.97 68.60 2.19 -1.34 16 23 C -0.15 0.09 8.67 22.03 0.19 0.29 16 24 C 0.11 0.04 11.17 83.31 0.93 0.97 16 25 N -0.27 -1.58 3.86 -187.28 -0.72 -2.30 16 26 N -0.34 -2.08 12.57 -56.62 -0.71 -2.79 16 27 C 0.13 0.21 11.44 85.42 0.98 1.19 16 28 C -0.11 0.67 5.08 30.59 0.16 0.83 16 29 C -0.10 0.26 4.49 30.59 0.14 0.40 16 30 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 34 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 35 H 0.08 -0.41 8.11 -2.39 -0.02 -0.43 16 36 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.41 -2.85 6.57 -92.71 -0.61 -3.46 16 42 H 0.16 0.92 7.01 -2.91 -0.02 0.90 16 43 H 0.10 -0.45 7.71 -2.39 -0.02 -0.47 16 44 H 0.40 -3.47 8.74 -74.05 -0.65 -4.11 16 45 H -0.28 0.01 7.07 99.48 0.70 0.72 16 46 H -0.27 0.20 7.11 99.48 0.71 0.91 16 47 H 0.18 -0.76 7.52 -2.91 -0.02 -0.78 16 48 H 0.20 -1.17 8.06 -2.91 -0.02 -1.20 16 49 H 0.23 -1.88 7.46 -2.91 -0.02 -1.90 16 50 H 0.08 -0.58 7.18 -2.39 -0.02 -0.60 16 51 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 52 H 0.07 -0.06 8.10 -2.39 -0.02 -0.08 16 53 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 Total: 0.00 -27.37 434.80 1.80 -25.57 By element: Atomic # 1 Polarization: -14.43 SS G_CDS: -0.28 Total: -14.71 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.93 Total: 14.27 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -3.90 Total: -6.72 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -2.14 Total: -17.07 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.19 Total: -1.34 kcal Total: -27.37 1.80 -25.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_11618758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.549 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds