Wall clock time and date at job start Sun Mar 7 2021 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.46557 * 2 1 4 4 C 1.34239 * 116.99671 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99639 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47464 * 299.99388 * 6 4 3 8 8 C 1.52998 * 109.47397 * 60.00023 * 6 4 3 9 9 C 1.53006 * 109.47176 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46843 * 300.00228 * 9 8 6 11 11 H 1.09006 * 109.47177 * 299.99372 * 10 9 8 12 12 C 1.53006 * 109.46843 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47022 * 64.99996 * 12 10 9 14 14 C 1.34781 * 120.00187 * 180.02562 * 13 12 10 15 15 O 1.21695 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.46668 * 120.00104 * 179.97438 * 14 13 12 17 17 C 1.37875 * 126.23275 * 179.97438 * 16 14 13 18 18 C 1.50698 * 126.45716 * 0.03818 * 17 16 14 19 19 C 1.39832 * 107.08584 * 180.02562 * 17 16 14 20 20 C 1.50708 * 126.06763 * 180.02562 * 19 17 16 21 21 O 1.42899 * 109.46779 * 292.00262 * 20 19 17 22 22 Si 1.86299 * 109.47039 * 52.00077 * 20 19 17 23 23 C 1.35451 * 107.86732 * 359.74009 * 19 17 16 24 24 C 1.50702 * 125.56696 * 180.29727 * 23 19 17 25 25 N 1.35540 * 108.86836 * 0.42562 * 23 19 17 26 26 C 1.52998 * 109.47421 * 59.99922 * 10 9 8 27 27 C 1.52996 * 109.47185 * 299.99866 * 26 10 9 28 28 H 1.09002 * 109.47226 * 299.99352 * 1 2 3 29 29 H 1.09004 * 109.47657 * 59.99958 * 1 2 3 30 30 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47226 * 240.00648 * 2 1 3 32 32 H 1.08991 * 109.47687 * 120.00345 * 2 1 3 33 33 H 1.08990 * 109.47038 * 299.99573 * 8 6 4 34 34 H 1.09001 * 109.46956 * 60.00164 * 8 6 4 35 35 H 1.08997 * 109.46888 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46860 * 59.99584 * 9 8 6 37 37 H 1.08989 * 109.46880 * 305.00050 * 12 10 9 38 38 H 1.09002 * 109.47136 * 184.99449 * 12 10 9 39 39 H 0.97002 * 120.00417 * 359.97438 * 13 12 10 40 40 H 1.09010 * 109.46971 * 89.97260 * 18 17 16 41 41 H 1.08998 * 109.47419 * 209.97469 * 18 17 16 42 42 H 1.09000 * 109.47371 * 329.97608 * 18 17 16 43 43 H 1.08995 * 109.47016 * 172.00143 * 20 19 17 44 44 H 0.96701 * 114.00398 * 59.99526 * 21 20 19 45 45 H 1.48498 * 109.99977 * 63.69833 * 22 20 19 46 46 H 1.48506 * 109.99924 * 185.01916 * 22 20 19 47 47 H 1.08999 * 109.47012 * 275.42231 * 24 23 19 48 48 H 1.08999 * 109.47167 * 35.42336 * 24 23 19 49 49 H 1.09006 * 109.46843 * 155.42053 * 24 23 19 50 50 H 0.97002 * 125.67441 * 179.82330 * 25 23 19 51 51 H 1.08996 * 109.46893 * 60.00182 * 26 10 9 52 52 H 1.09002 * 109.46667 * 179.97438 * 26 10 9 53 53 H 1.09000 * 109.47397 * 179.97438 * 27 26 10 54 54 H 1.09009 * 109.47219 * 300.00145 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0138 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0806 0.5868 -0.0015 6 6 3.9205 2.9376 0.0000 7 1 3.5842 3.4702 -0.8895 8 6 3.4495 3.6838 1.2499 9 6 4.0347 5.0975 1.2507 10 6 5.5626 5.0169 1.2502 11 1 5.8987 4.4841 2.1398 12 6 6.1478 6.4306 1.2504 13 7 5.7957 7.1047 2.5025 14 6 6.2059 8.3690 2.7257 15 8 6.8693 8.9504 1.8873 16 6 5.8529 9.0441 3.9790 17 6 6.2026 10.3281 4.3396 18 6 7.0160 11.2978 3.5218 19 6 5.6600 10.5610 5.6072 20 6 5.7838 11.8335 6.4051 21 8 7.1419 12.0094 6.8134 22 14 5.2591 13.2793 5.3539 23 6 4.9980 9.4423 5.9879 24 6 4.2576 9.2615 7.2880 25 7 5.1126 8.5110 5.0098 26 6 6.0336 4.2707 0.0003 27 6 5.4484 2.8571 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8898 33 1 2.3611 3.7408 1.2504 34 1 3.7860 3.1512 2.1394 35 1 3.6995 5.6289 2.1414 36 1 3.6987 5.6303 0.3612 37 1 5.7419 6.9919 0.4089 38 1 7.2327 6.3748 1.1605 39 1 5.2666 6.6415 3.1706 40 1 6.3513 11.8876 2.8904 41 1 7.5680 11.9611 4.1876 42 1 7.7171 10.7461 2.8955 43 1 5.1445 11.7737 7.2859 44 1 7.7685 12.0707 6.0794 45 1 3.8233 13.1530 4.9968 46 1 5.4905 14.5503 6.0862 47 1 4.9571 8.9516 8.0643 48 1 3.7911 10.2040 7.5745 49 1 3.4892 8.4982 7.1654 50 1 4.7326 7.6187 5.0310 51 1 5.6976 4.8036 -0.8892 52 1 7.1221 4.2138 -0.0002 53 1 5.7836 2.3256 -0.8912 54 1 5.7845 2.3242 0.8891 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_12297754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:15 Heat of formation + Delta-G solvation = -137.351592 kcal Electronic energy + Delta-G solvation = -33274.329510 eV Core-core repulsion = 28791.240296 eV Total energy + Delta-G solvation = -4483.089214 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.208 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.62946 -41.84773 -40.47955 -39.36344 -37.75258 -37.73521 -36.00743 -33.76179 -33.37514 -32.80182 -32.11886 -31.75076 -29.21201 -28.35219 -26.94404 -26.10702 -24.56609 -23.79280 -23.26645 -22.27610 -21.64484 -20.97748 -20.69726 -20.13486 -19.28851 -18.75457 -17.69811 -17.66788 -17.60981 -16.94664 -16.77155 -16.57426 -16.14291 -15.71016 -15.50057 -15.25355 -15.21504 -14.98506 -14.80303 -14.67983 -14.61524 -14.27399 -14.10263 -13.92853 -13.83524 -13.69175 -13.58001 -13.51486 -13.27094 -13.15129 -13.08471 -12.99752 -12.90157 -12.64506 -12.58362 -12.28395 -12.25405 -12.12863 -12.02677 -11.88072 -11.60469 -11.47526 -11.24831 -11.13876 -10.97988 -10.52866 -10.19618 -9.52659 -8.96191 -4.90443 0.40987 1.08181 1.25299 1.54741 1.62187 1.75147 1.96169 2.03806 2.17425 2.33268 3.40072 3.56515 3.63626 3.68341 3.80043 3.85158 3.87829 3.93267 3.96493 4.01408 4.02606 4.13366 4.16777 4.25561 4.29464 4.36307 4.37640 4.44017 4.48303 4.49962 4.62383 4.66130 4.70970 4.73106 4.80625 4.81671 4.86317 4.95653 4.95785 4.99864 5.06106 5.06979 5.09289 5.10278 5.15055 5.19499 5.22289 5.28198 5.33325 5.40797 5.43051 5.49382 5.73062 5.92568 6.39142 6.56083 6.64129 6.79479 7.14526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.109 4.109 10 C -0.092 4.092 11 H 0.085 0.915 12 C 0.128 3.872 13 N -0.719 5.719 14 C 0.588 3.412 15 O -0.560 6.560 16 C -0.076 4.076 17 C -0.071 4.071 18 C -0.102 4.102 19 C -0.227 4.227 20 C -0.027 4.027 21 O -0.557 6.557 22 Si 0.740 3.260 23 C 0.082 3.918 24 C -0.096 4.096 25 N -0.523 5.523 26 C -0.107 4.107 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.407 0.593 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.387 0.613 45 H -0.293 1.293 46 H -0.290 1.290 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.429 0.571 51 H 0.078 0.922 52 H 0.076 0.924 53 H 0.064 0.936 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 -2.355 0.852 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.111 4.111 11 H 0.103 0.897 12 C 0.005 3.995 13 N -0.371 5.371 14 C 0.377 3.623 15 O -0.440 6.440 16 C -0.188 4.188 17 C -0.080 4.080 18 C -0.158 4.158 19 C -0.234 4.234 20 C -0.138 4.138 21 O -0.365 6.365 22 Si 0.646 3.354 23 C -0.038 4.038 24 C -0.154 4.154 25 N -0.121 5.121 26 C -0.144 4.144 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.243 0.757 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.237 0.763 45 H -0.219 1.219 46 H -0.217 1.217 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.270 0.730 51 H 0.097 0.903 52 H 0.094 0.906 53 H 0.083 0.917 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.746 -1.794 0.677 5.118 hybrid contribution -0.474 -1.559 0.571 1.727 sum -5.220 -3.353 1.248 6.328 Atomic orbital electron populations 1.21820 0.90648 1.04236 1.03769 1.23228 0.96943 0.79501 1.02328 1.86521 1.24385 1.33294 1.83496 1.24445 0.80482 0.93477 0.70919 1.90668 1.61164 1.44591 1.46837 1.21270 0.96620 0.88085 1.03585 0.85692 1.21495 1.01735 0.95840 0.95122 1.21600 0.93716 0.95593 1.03709 1.21392 0.96035 0.93680 1.00000 0.89661 1.21412 1.00039 0.92448 0.85603 1.45771 1.55990 1.13758 1.21536 1.17117 0.79078 0.81443 0.84681 1.90820 1.40660 1.66242 1.46231 1.20008 1.10111 0.96410 0.92270 1.20005 0.99831 0.93617 0.94541 1.20468 0.99179 0.97036 0.99108 1.19549 1.08839 0.97767 0.97218 1.24278 0.87184 1.00301 1.02074 1.86461 1.16537 1.95665 1.37865 0.93822 0.81411 0.74637 0.85487 1.20682 1.01615 0.88865 0.92642 1.20587 0.99685 1.04549 0.90538 1.41756 1.41801 1.14778 1.13794 1.21472 1.01171 0.93870 0.97930 1.21384 0.91540 0.97796 1.02993 0.91117 0.91274 0.88664 0.91657 0.91508 0.89901 0.91414 0.90204 0.90663 0.91493 0.91959 0.75730 0.89819 0.89432 0.90785 0.87043 0.76309 1.21946 1.21695 0.89560 0.89538 0.89233 0.73040 0.90330 0.90557 0.91740 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.05 0.03 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.91 10.12 -51.51 -0.52 -1.43 16 4 C 0.46 1.63 7.25 71.23 0.52 2.15 16 5 O -0.54 -5.63 15.73 21.98 0.35 -5.29 16 6 C -0.08 0.26 2.63 -11.54 -0.03 0.23 16 7 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 8 C -0.10 0.72 5.14 30.60 0.16 0.88 16 9 C -0.11 1.01 5.08 30.60 0.16 1.17 16 10 C -0.09 0.74 2.23 -10.79 -0.02 0.71 16 11 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 12 C 0.13 -0.53 5.06 86.38 0.44 -0.09 16 13 N -0.72 2.83 5.28 -467.08 -2.47 0.37 16 14 C 0.59 1.95 7.79 86.44 0.67 2.62 16 15 O -0.56 -5.92 14.80 -4.33 -0.06 -5.98 16 16 C -0.08 -0.13 7.06 40.35 0.28 0.15 16 17 C -0.07 -0.19 5.83 -19.56 -0.11 -0.31 16 18 C -0.10 -0.03 7.98 71.24 0.57 0.54 16 19 C -0.23 -0.35 4.71 -20.12 -0.09 -0.45 16 20 C -0.03 -0.04 2.86 71.24 0.20 0.17 16 21 O -0.56 -1.60 12.88 -148.98 -1.92 -3.52 16 22 Si 0.74 1.23 29.57 68.60 2.03 3.26 16 23 C 0.08 -0.13 7.13 41.34 0.29 0.17 16 24 C -0.10 0.64 9.99 71.24 0.71 1.35 16 25 N -0.52 2.06 5.99 -171.93 -1.03 1.03 16 26 C -0.11 0.68 5.20 30.59 0.16 0.84 16 27 C -0.10 0.28 4.49 30.59 0.14 0.42 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 30 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.06 0.09 8.13 -2.39 -0.02 0.07 16 32 H 0.07 0.06 8.13 -2.39 -0.02 0.05 16 33 H 0.08 -0.58 8.11 -2.39 -0.02 -0.59 16 34 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 -0.91 7.18 -2.39 -0.02 -0.93 16 36 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.07 -0.15 8.14 -2.39 -0.02 -0.16 16 38 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.41 -3.99 6.78 -92.71 -0.63 -4.62 16 40 H 0.08 -0.09 7.65 -2.38 -0.02 -0.11 16 41 H 0.09 -0.45 5.29 -2.39 -0.01 -0.46 16 42 H 0.07 0.32 6.48 -2.39 -0.02 0.30 16 43 H 0.11 0.04 6.65 -2.39 -0.02 0.02 16 44 H 0.39 -1.31 6.89 -74.06 -0.51 -1.82 16 45 H -0.29 -2.15 7.11 99.48 0.71 -1.45 16 46 H -0.29 -2.22 7.11 99.48 0.71 -1.51 16 47 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H 0.09 -0.58 7.24 -2.39 -0.02 -0.60 16 49 H 0.09 -0.94 8.14 -2.38 -0.02 -0.96 16 50 H 0.43 -4.67 8.19 -92.71 -0.76 -5.43 16 51 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 52 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 53 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 54 H 0.06 -0.04 8.10 -2.38 -0.02 -0.05 16 Total: 0.00 -23.89 424.28 0.66 -23.22 By element: Atomic # 1 Polarization: -23.13 SS G_CDS: -0.93 Total: -24.06 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.22 Total: 12.40 kcal Atomic # 7 Polarization: 4.89 SS G_CDS: -3.50 Total: 1.39 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -2.16 Total: -16.22 kcal Atomic # 14 Polarization: 1.23 SS G_CDS: 2.03 Total: 3.26 kcal Total: -23.89 0.66 -23.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_12297754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.131 kcal (2) G-P(sol) polarization free energy of solvation -23.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds