Wall clock time and date at job start Sun Mar 7 2021 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.46870 * 2 1 4 4 C 1.34225 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99917 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00179 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47336 * 59.99673 * 6 4 3 8 8 C 1.53005 * 109.46931 * 179.97438 * 6 4 3 9 9 C 1.53002 * 109.46814 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47125 * 299.99699 * 9 8 6 11 11 H 1.09002 * 109.47159 * 300.00482 * 10 9 8 12 12 C 1.53005 * 109.47478 * 180.02562 * 10 9 8 13 13 N 1.46496 * 109.47059 * 175.00100 * 12 10 9 14 14 C 1.34774 * 119.99544 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38237 * 119.99613 * 269.72405 * 17 16 14 19 19 C 1.38237 * 119.99929 * 179.76698 * 18 17 16 20 20 C 1.38236 * 119.99940 * 0.50550 * 19 18 17 21 21 C 1.50698 * 120.00193 * 179.72518 * 20 19 18 22 22 O 1.42901 * 109.47140 * 120.02276 * 21 20 19 23 23 Si 1.86297 * 109.47126 * 0.02562 * 21 20 19 24 24 C 1.38236 * 119.99989 * 359.74725 * 20 19 18 25 25 C 1.38236 * 120.00393 * 89.99654 * 17 16 14 26 26 C 1.53005 * 109.47029 * 60.00432 * 10 9 8 27 27 C 1.53000 * 109.47167 * 299.99469 * 6 4 3 28 28 H 1.09010 * 109.47289 * 60.00291 * 1 2 3 29 29 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47733 * 300.00018 * 1 2 3 31 31 H 1.08998 * 109.47052 * 240.00190 * 2 1 3 32 32 H 1.08999 * 109.46885 * 120.00010 * 2 1 3 33 33 H 1.08993 * 109.46985 * 60.00051 * 8 6 4 34 34 H 1.08993 * 109.46967 * 299.99786 * 8 6 4 35 35 H 1.09006 * 109.47000 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47495 * 59.99975 * 9 8 6 37 37 H 1.08996 * 109.46524 * 55.00206 * 12 10 9 38 38 H 1.08992 * 109.46876 * 295.00539 * 12 10 9 39 39 H 0.96994 * 120.00700 * 0.02562 * 13 12 10 40 40 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 41 41 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 42 42 H 1.08000 * 119.99953 * 0.02562 * 18 17 16 43 43 H 1.07998 * 119.99812 * 180.23517 * 19 18 17 44 44 H 1.08993 * 109.47162 * 240.01931 * 21 20 19 45 45 H 0.96700 * 114.00111 * 180.02562 * 22 21 20 46 46 H 1.48499 * 109.99823 * 298.68089 * 23 21 20 47 47 H 1.48507 * 110.00098 * 59.99867 * 23 21 20 48 48 H 1.08000 * 120.00394 * 179.97438 * 24 20 19 49 49 H 1.07999 * 119.99587 * 0.02562 * 25 17 16 50 50 H 1.08993 * 109.46985 * 59.99830 * 26 10 9 51 51 H 1.09003 * 109.47372 * 180.02562 * 26 10 9 52 52 H 1.09002 * 109.47159 * 300.00313 * 27 6 4 53 53 H 1.09006 * 109.46634 * 60.00277 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5850 3.4692 0.8904 8 6 5.4486 2.8574 -0.0001 9 6 6.0333 4.2713 0.0011 10 6 5.5617 5.0193 -1.2475 11 1 5.8976 4.4878 -2.1380 12 6 6.1469 6.4330 -1.2467 13 7 5.7941 7.1082 -2.4980 14 6 6.2051 8.3723 -2.7206 15 8 6.8675 8.9506 -1.8853 16 6 5.8417 9.0673 -4.0075 17 6 6.4193 10.4592 -4.0072 18 6 5.6803 11.5140 -3.5050 19 6 6.2119 12.7901 -3.5004 20 6 7.4785 13.0130 -4.0074 21 6 8.0556 14.4051 -4.0080 22 8 9.2585 14.4223 -3.2367 23 14 6.8240 15.5883 -3.2640 24 6 8.2154 11.9590 -4.5144 25 6 7.6858 10.6821 -4.5143 26 6 4.0338 5.0993 -1.2474 27 6 3.4485 3.6851 -1.2486 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7844 2.3257 -0.8903 34 1 5.7845 2.3249 0.8896 35 1 7.1219 4.2142 0.0005 36 1 5.6974 4.8027 0.8915 37 1 7.2318 6.3769 -1.1575 38 1 5.7416 6.9935 -0.4044 39 1 5.2646 6.6457 -3.1662 40 1 6.2464 8.5066 -4.8500 41 1 4.7568 9.1237 -4.0962 42 1 4.6892 11.3405 -3.1125 43 1 5.6361 13.6135 -3.1045 44 1 8.2763 14.7064 -5.0319 45 1 9.6854 15.2889 -3.1931 46 1 5.5802 15.6033 -4.0752 47 1 6.5148 15.1882 -1.8676 48 1 9.2048 12.1332 -4.9109 49 1 8.2612 9.8588 -4.9110 50 1 3.6979 5.6307 -0.3570 51 1 3.6977 5.6318 -2.1372 52 1 3.7841 3.1535 -2.1390 53 1 2.3600 3.7422 -1.2481 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_12335836.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:27 Heat of formation + Delta-G solvation = -149.912534 kcal Electronic energy + Delta-G solvation = -31536.328473 eV Core-core repulsion = 27145.431965 eV Total energy + Delta-G solvation = -4390.896507 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.197 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.85963 -41.23943 -40.29295 -39.41641 -37.77235 -37.61955 -35.91049 -34.26205 -33.12178 -32.27881 -32.07771 -31.76026 -29.97383 -27.54515 -25.64942 -24.52621 -23.97629 -23.78230 -23.22603 -22.14134 -21.63116 -21.33102 -20.70053 -18.75638 -18.41137 -18.19264 -17.75171 -17.69283 -17.56815 -17.07912 -16.81731 -16.38597 -16.27130 -15.85845 -15.34743 -15.19541 -15.12667 -14.97539 -14.84665 -14.70486 -14.65958 -14.43610 -13.92301 -13.86190 -13.71939 -13.57207 -13.47931 -13.28260 -13.16698 -13.02335 -12.96224 -12.85874 -12.58009 -12.35269 -12.26129 -12.13453 -12.07745 -11.89070 -11.83587 -11.60234 -11.47451 -11.24934 -11.13979 -10.99030 -10.36188 -10.10764 -10.01664 -9.67151 -4.98326 0.11689 0.30987 1.08016 1.27855 1.59896 1.61733 1.62372 1.95436 2.14888 2.67656 3.40532 3.40918 3.56598 3.57289 3.64227 3.72551 3.82075 3.84869 3.93369 3.95563 3.96325 4.00118 4.01824 4.15504 4.25060 4.25962 4.29639 4.33306 4.36849 4.44164 4.45393 4.48180 4.55084 4.60408 4.64363 4.72524 4.80331 4.82390 4.86754 4.91419 4.95174 4.96266 5.06895 5.08849 5.10927 5.15481 5.20129 5.23913 5.30387 5.39005 5.41250 5.43078 5.46360 5.50723 5.89333 6.54176 6.64034 6.88833 7.25859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.091 4.091 11 H 0.088 0.912 12 C 0.126 3.874 13 N -0.716 5.716 14 C 0.510 3.490 15 O -0.585 6.585 16 C -0.097 4.097 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.147 4.147 20 C -0.098 4.098 21 C -0.080 4.080 22 O -0.566 6.566 23 Si 0.777 3.223 24 C -0.103 4.103 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.403 0.597 46 H -0.284 1.284 47 H -0.305 1.305 48 H 0.135 0.865 49 H 0.142 0.858 50 H 0.071 0.929 51 H 0.085 0.915 52 H 0.069 0.931 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 1.170 -4.737 6.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.110 4.110 11 H 0.107 0.893 12 C 0.002 3.998 13 N -0.369 5.369 14 C 0.298 3.702 15 O -0.464 6.464 16 C -0.136 4.136 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.164 4.164 20 C -0.098 4.098 21 C -0.190 4.190 22 O -0.376 6.376 23 Si 0.684 3.316 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.146 4.146 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.255 0.745 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.114 0.886 45 H 0.254 0.746 46 H -0.211 1.211 47 H -0.234 1.234 48 H 0.153 0.847 49 H 0.160 0.840 50 H 0.090 0.910 51 H 0.104 0.896 52 H 0.087 0.913 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.383 0.723 -3.727 5.799 hybrid contribution 0.030 -1.145 -0.055 1.147 sum -4.354 -0.422 -3.783 5.783 Atomic orbital electron populations 1.21821 0.90618 1.04243 1.03781 1.23234 0.96964 0.79481 1.02333 1.86515 1.24342 1.33325 1.83479 1.24422 0.80498 0.93433 0.70912 1.90667 1.61171 1.44583 1.46864 1.21269 0.96545 0.88145 1.03643 0.85863 1.21373 0.91626 0.97637 1.03013 1.21485 1.01031 0.94031 0.98043 1.21379 0.96167 0.93510 0.99906 0.89321 1.21330 0.99514 0.92638 0.86279 1.45899 1.55798 1.13971 1.21228 1.20993 0.78670 0.81797 0.88744 1.90761 1.40629 1.66496 1.48549 1.20766 1.04866 0.91838 0.96154 1.19609 0.94670 0.94899 0.98001 1.21150 1.00857 0.91967 0.98933 1.20981 0.96227 0.97669 1.01530 1.19731 0.94422 0.95850 0.99758 1.24858 0.95115 0.98441 1.00575 1.86457 1.38959 1.38778 1.73398 0.94571 0.76419 0.85055 0.75586 1.21168 0.99840 0.92265 0.98798 1.21358 0.95053 0.97339 0.99202 1.21610 0.93548 0.95627 1.03817 1.21513 1.01774 0.95824 0.95077 0.91080 0.88645 0.91295 0.91466 0.91687 0.91678 0.91848 0.90808 0.90708 0.92763 0.92434 0.74468 0.84758 0.84894 0.84437 0.86967 0.88595 0.74600 1.21139 1.23401 0.84729 0.84048 0.90998 0.89624 0.91252 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.14 10.12 -51.37 -0.52 -1.66 16 4 C 0.46 1.99 7.26 71.24 0.52 2.51 16 5 O -0.54 -6.03 15.73 21.97 0.35 -5.69 16 6 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 8 C -0.10 0.16 4.49 30.60 0.14 0.30 16 9 C -0.11 0.51 5.20 30.59 0.16 0.67 16 10 C -0.09 0.61 2.23 -10.79 -0.02 0.58 16 11 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 12 C 0.13 -0.29 5.07 86.38 0.44 0.15 16 13 N -0.72 2.96 5.28 -463.07 -2.45 0.52 16 14 C 0.51 1.28 7.82 87.66 0.69 1.96 16 15 O -0.58 -8.28 16.03 -3.02 -0.05 -8.33 16 16 C -0.10 0.34 5.83 29.10 0.17 0.51 16 17 C -0.07 -0.32 4.37 -19.87 -0.09 -0.40 16 18 C -0.11 -0.74 9.70 22.27 0.22 -0.53 16 19 C -0.15 -1.36 8.67 22.27 0.19 -1.17 16 20 C -0.10 -0.84 5.42 -19.87 -0.11 -0.94 16 21 C -0.08 -0.22 2.81 71.24 0.20 -0.02 16 22 O -0.57 -1.91 12.74 -148.98 -1.90 -3.81 16 23 Si 0.78 0.69 29.79 68.60 2.04 2.74 16 24 C -0.10 -0.77 9.61 22.27 0.21 -0.55 16 25 C -0.11 -0.60 9.70 22.27 0.22 -0.39 16 26 C -0.11 0.91 5.08 30.61 0.16 1.06 16 27 C -0.10 0.63 5.14 30.61 0.16 0.79 16 28 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 29 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 32 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 33 H 0.06 0.02 8.10 -2.39 -0.02 0.00 16 34 H 0.06 0.06 8.10 -2.39 -0.02 0.04 16 35 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 36 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.42 -4.61 7.65 -92.71 -0.71 -5.32 16 40 H 0.13 -1.24 8.08 -2.39 -0.02 -1.26 16 41 H 0.13 -1.21 8.08 -2.39 -0.02 -1.23 16 42 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.11 0.97 4.88 -2.91 -0.01 0.95 16 44 H 0.10 -0.20 7.96 -2.39 -0.02 -0.22 16 45 H 0.40 -3.15 8.74 -74.06 -0.65 -3.80 16 46 H -0.28 -1.51 7.11 99.48 0.71 -0.80 16 47 H -0.31 -2.99 7.11 99.48 0.71 -2.28 16 48 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 49 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 50 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 51 H 0.09 -0.94 7.18 -2.39 -0.02 -0.96 16 52 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.08 -0.52 8.11 -2.38 -0.02 -0.54 16 Total: 0.00 -29.55 428.34 1.46 -28.09 By element: Atomic # 1 Polarization: -17.95 SS G_CDS: -0.41 Total: -18.37 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.40 Total: 6.50 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -2.45 Total: 0.52 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -2.12 Total: -19.48 kcal Atomic # 14 Polarization: 0.69 SS G_CDS: 2.04 Total: 2.74 kcal Total: -29.55 1.46 -28.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_12335836.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.818 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds