Wall clock time and date at job start Sun Mar 7 2021 07:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47053 * 2 1 4 4 C 1.34231 * 116.99670 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00593 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99774 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.47439 * 300.00264 * 6 4 3 8 8 C 1.53010 * 109.46906 * 60.00140 * 6 4 3 9 9 C 1.53001 * 109.46787 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47363 * 299.99915 * 9 8 6 11 11 H 1.08995 * 109.47290 * 300.00372 * 10 9 8 12 12 C 1.53008 * 109.46913 * 179.97438 * 10 9 8 13 13 N 1.46502 * 109.46619 * 65.00654 * 12 10 9 14 14 C 1.34781 * 119.99512 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99926 * 359.97438 * 14 13 12 16 16 C 1.47582 * 119.99719 * 179.97438 * 14 13 12 17 17 C 1.40202 * 119.83100 * 0.02562 * 16 14 13 18 18 C 1.36230 * 120.37540 * 179.97438 * 17 16 14 19 19 C 1.39879 * 119.96009 * 0.02562 * 18 17 16 20 20 C 1.46257 * 133.84209 * 179.97438 * 19 18 17 21 21 C 1.50706 * 126.47808 * 359.97438 * 20 19 18 22 22 O 1.42895 * 109.47147 * 74.99850 * 21 20 19 23 23 Si 1.86299 * 109.46748 * 194.99492 * 21 20 19 24 24 C 1.34445 * 107.03848 * 180.24291 * 20 19 18 25 25 N 1.36566 * 109.98278 * 359.60893 * 24 20 19 26 26 C 1.37828 * 109.86300 * 0.40930 * 25 24 20 27 27 C 1.38636 * 133.38487 * 179.81446 * 26 25 24 28 28 C 1.53004 * 109.47167 * 60.00575 * 10 9 8 29 29 C 1.52995 * 109.47027 * 179.97438 * 6 4 3 30 30 H 1.08992 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46763 * 300.00056 * 1 2 3 32 32 H 1.09003 * 109.46699 * 59.99537 * 1 2 3 33 33 H 1.09003 * 109.47513 * 240.00489 * 2 1 3 34 34 H 1.09001 * 109.47498 * 120.00007 * 2 1 3 35 35 H 1.08991 * 109.47174 * 299.99772 * 8 6 4 36 36 H 1.09002 * 109.46884 * 60.00212 * 8 6 4 37 37 H 1.09006 * 109.46593 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.46958 * 60.00597 * 9 8 6 39 39 H 1.08997 * 109.47363 * 305.00063 * 12 10 9 40 40 H 1.09003 * 109.46982 * 185.00014 * 12 10 9 41 41 H 0.97001 * 120.00343 * 359.97438 * 13 12 10 42 42 H 1.07994 * 119.80942 * 359.97438 * 17 16 14 43 43 H 1.07996 * 120.02302 * 179.97438 * 18 17 16 44 44 H 1.09000 * 109.47318 * 314.98963 * 21 20 19 45 45 H 0.96700 * 113.99916 * 179.97438 * 22 21 20 46 46 H 1.48502 * 110.00097 * 300.00038 * 23 21 20 47 47 H 1.48504 * 110.00088 * 61.32125 * 23 21 20 48 48 H 1.08002 * 125.01079 * 179.76266 * 24 20 19 49 49 H 0.97002 * 125.07155 * 180.16803 * 25 24 20 50 50 H 1.08002 * 120.17176 * 359.95659 * 27 26 25 51 51 H 1.09002 * 109.47094 * 59.99355 * 28 10 9 52 52 H 1.08991 * 109.47242 * 179.97438 * 28 10 9 53 53 H 1.09000 * 109.47380 * 60.00880 * 29 6 4 54 54 H 1.08999 * 109.47676 * 299.99797 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4691 -0.8904 8 6 3.4486 3.6851 1.2487 9 6 4.0339 5.0987 1.2484 10 6 5.5618 5.0181 1.2495 11 1 5.8969 4.4863 2.1399 12 6 6.1470 6.4319 1.2486 13 7 5.7937 7.1073 2.4997 14 6 6.2047 8.3715 2.7222 15 8 6.8690 8.9511 1.8849 16 6 5.8483 9.0522 3.9823 17 6 5.0826 8.3803 4.9455 18 6 4.7477 8.9978 6.1127 19 6 5.1682 10.3098 6.3545 20 6 4.9902 11.2419 7.4675 21 6 4.2342 10.9787 8.7444 22 8 5.0075 10.1231 9.5881 23 14 3.9151 12.5915 9.6206 24 6 5.6236 12.3798 7.1336 25 7 6.1995 12.2493 5.9021 26 6 5.9381 10.9952 5.3935 27 6 6.2756 10.3588 4.2090 28 6 6.0339 4.2705 0.0008 29 6 5.4486 2.8573 0.0014 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3602 3.7422 1.2481 36 1 3.7842 3.1534 2.1391 37 1 3.6972 5.6315 2.1378 38 1 3.6987 5.6306 0.3580 39 1 5.7420 6.9923 0.4060 40 1 7.2320 6.3759 1.1598 41 1 5.2640 6.6448 3.1678 42 1 4.7564 7.3674 4.7611 43 1 4.1573 8.4751 6.8506 44 1 3.2842 10.4976 8.5116 45 1 4.5814 9.9113 10.4299 46 1 5.2025 13.2575 9.9436 47 1 3.0848 13.4781 8.7663 48 1 5.6722 13.2656 7.7495 49 1 6.7127 12.9378 5.4510 50 1 6.8655 10.8736 3.4651 51 1 5.6987 4.8024 -0.8896 52 1 7.1224 4.2135 0.0014 53 1 5.7854 2.3246 -0.8879 54 1 5.7839 2.3259 0.8921 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_12335838.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:31 Heat of formation + Delta-G solvation = -109.792565 kcal Electronic energy + Delta-G solvation = -34874.549986 eV Core-core repulsion = 30163.515019 eV Total energy + Delta-G solvation = -4711.034967 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.55296 -41.82793 -40.97117 -39.50578 -37.88455 -37.70601 -37.46971 -35.99289 -33.42826 -33.18254 -32.33587 -31.73875 -30.84871 -30.65709 -27.67064 -26.42942 -25.10174 -24.16153 -23.79767 -23.64173 -23.07382 -21.62218 -21.47410 -20.74599 -20.61269 -19.31387 -18.72655 -18.41738 -18.22057 -17.67096 -17.57806 -17.44379 -17.05245 -16.52872 -15.92457 -15.76448 -15.62505 -15.51574 -15.24919 -15.10565 -15.00164 -14.87814 -14.80253 -14.71339 -14.63352 -14.54519 -13.88190 -13.83527 -13.68771 -13.52359 -13.24922 -13.23573 -12.99750 -12.89826 -12.69485 -12.56576 -12.55621 -12.24658 -12.14505 -12.09540 -11.92580 -11.85472 -11.57651 -11.44292 -11.26777 -11.11914 -11.03583 -10.86653 -10.17999 -10.14315 -9.45169 -8.89954 -4.91051 -0.39799 0.32050 1.10968 1.23808 1.38235 1.64851 1.71990 1.82642 1.87619 2.02043 2.20912 2.82262 3.42879 3.49716 3.58190 3.60708 3.66419 3.68041 3.75234 3.85862 3.95884 3.99094 4.04035 4.04912 4.07264 4.15934 4.22316 4.28302 4.31511 4.32386 4.39865 4.43806 4.46831 4.50978 4.52408 4.66719 4.71885 4.76890 4.82923 4.85976 4.89075 4.91968 4.97735 5.09689 5.11844 5.13335 5.16734 5.18492 5.23261 5.30990 5.35220 5.36357 5.42682 5.45226 5.52067 5.52700 5.89834 6.36616 6.46391 6.66957 7.03835 7.13270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.093 4.093 11 H 0.088 0.912 12 C 0.125 3.875 13 N -0.708 5.708 14 C 0.561 3.439 15 O -0.584 6.584 16 C -0.131 4.131 17 C -0.105 4.105 18 C -0.076 4.076 19 C -0.083 4.083 20 C -0.188 4.188 21 C -0.044 4.044 22 O -0.568 6.568 23 Si 0.779 3.221 24 C 0.065 3.935 25 N -0.580 5.580 26 C 0.067 3.933 27 C -0.070 4.070 28 C -0.107 4.107 29 C -0.099 4.099 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.415 0.585 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.086 0.914 45 H 0.400 0.600 46 H -0.291 1.291 47 H -0.291 1.291 48 H 0.185 0.815 49 H 0.433 0.567 50 H 0.128 0.872 51 H 0.077 0.923 52 H 0.075 0.925 53 H 0.064 0.936 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 0.172 5.412 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.111 4.111 11 H 0.106 0.894 12 C 0.002 3.998 13 N -0.360 5.360 14 C 0.349 3.651 15 O -0.465 6.465 16 C -0.135 4.135 17 C -0.124 4.124 18 C -0.094 4.094 19 C -0.088 4.088 20 C -0.195 4.195 21 C -0.154 4.154 22 O -0.377 6.377 23 Si 0.684 3.316 24 C -0.064 4.064 25 N -0.183 5.183 26 C -0.040 4.040 27 C -0.092 4.092 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.177 0.823 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.251 0.749 46 H -0.218 1.218 47 H -0.218 1.218 48 H 0.202 0.798 49 H 0.273 0.727 50 H 0.146 0.854 51 H 0.096 0.904 52 H 0.093 0.907 53 H 0.082 0.918 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.859 1.231 4.236 7.334 hybrid contribution 0.585 -0.267 -0.726 0.970 sum -5.274 0.964 3.510 6.408 Atomic orbital electron populations 1.21819 0.90629 1.04226 1.03785 1.23234 0.96958 0.79504 1.02318 1.86520 1.24350 1.33293 1.83485 1.24432 0.80488 0.93444 0.70894 1.90668 1.61168 1.44595 1.46878 1.21269 0.96556 0.88114 1.03635 0.85742 1.21500 1.01797 0.95750 0.95131 1.21617 0.93562 0.95727 1.03878 1.21399 0.96195 0.93412 1.00120 0.89359 1.21451 0.99959 0.92700 0.85723 1.45788 1.55239 1.13465 1.21521 1.18306 0.78770 0.81989 0.86031 1.90771 1.41118 1.66747 1.47902 1.19534 1.03767 0.94626 0.95586 1.20963 0.97977 1.00860 0.92641 1.20467 0.99302 0.92145 0.97500 1.19555 1.00069 0.95388 0.93825 1.20097 1.08384 0.94005 0.97009 1.24164 0.94975 1.05991 0.90238 1.86483 1.47874 1.69723 1.33626 0.94047 0.79105 0.73193 0.85263 1.21990 0.96784 1.00206 0.87449 1.41728 1.47189 1.12974 1.16425 1.18207 1.02474 0.87168 0.96161 1.20121 1.00204 0.94303 0.94556 1.21469 1.01107 0.93973 0.97914 1.21369 0.91612 0.97679 1.03021 0.88665 0.91069 0.91298 0.91696 0.91485 0.89772 0.91273 0.89888 0.90722 0.91655 0.92152 0.74647 0.82273 0.83228 0.89623 0.74917 1.21781 1.21849 0.79847 0.72748 0.85402 0.90446 0.90659 0.91771 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.06 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.14 10.12 -51.43 -0.52 -1.66 16 4 C 0.46 1.99 7.26 71.24 0.52 2.50 16 5 O -0.54 -6.04 15.73 21.96 0.35 -5.69 16 6 C -0.08 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.12 -0.65 8.14 -2.39 -0.02 -0.66 16 8 C -0.10 0.61 5.14 30.60 0.16 0.76 16 9 C -0.11 0.86 5.07 30.59 0.16 1.01 16 10 C -0.09 0.58 2.23 -10.79 -0.02 0.55 16 11 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 12 C 0.12 -0.20 5.06 86.38 0.44 0.23 16 13 N -0.71 0.72 5.23 -466.20 -2.44 -1.72 16 14 C 0.56 3.85 7.76 86.71 0.67 4.52 16 15 O -0.58 -8.97 16.31 -3.98 -0.06 -9.03 16 16 C -0.13 -0.69 5.87 -20.07 -0.12 -0.81 16 17 C -0.10 0.00 9.46 22.28 0.21 0.21 16 18 C -0.08 -0.15 10.03 22.20 0.22 0.07 16 19 C -0.08 -0.52 6.35 -20.14 -0.13 -0.65 16 20 C -0.19 -0.86 5.61 -18.64 -0.10 -0.96 16 21 C -0.04 0.06 3.05 71.24 0.22 0.28 16 22 O -0.57 0.40 12.86 -148.98 -1.92 -1.52 16 23 Si 0.78 -3.32 30.78 68.60 2.11 -1.20 16 24 C 0.06 0.19 10.43 83.09 0.87 1.05 16 25 N -0.58 -1.51 6.07 -187.72 -1.14 -2.65 16 26 C 0.07 0.44 7.26 38.96 0.28 0.72 16 27 C -0.07 -0.52 9.61 22.63 0.22 -0.30 16 28 C -0.11 0.53 5.20 30.58 0.16 0.69 16 29 C -0.10 0.17 4.49 30.58 0.14 0.31 16 30 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 35 H 0.08 -0.51 8.11 -2.39 -0.02 -0.53 16 36 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.08 -0.81 7.18 -2.38 -0.02 -0.83 16 38 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 41 H 0.41 -2.94 5.64 -92.71 -0.52 -3.46 16 42 H 0.16 -1.24 6.36 -2.91 -0.02 -1.26 16 43 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 44 H 0.09 -0.41 7.96 -2.39 -0.02 -0.42 16 45 H 0.40 -4.57 8.74 -74.06 -0.65 -5.22 16 46 H -0.29 -0.51 7.05 99.48 0.70 0.19 16 47 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 48 H 0.18 -0.24 6.30 -2.91 -0.02 -0.26 16 49 H 0.43 -1.33 8.96 -92.71 -0.83 -2.16 16 50 H 0.13 1.03 7.62 -2.91 -0.02 1.00 16 51 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 52 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 53 H 0.06 0.05 8.10 -2.39 -0.02 0.03 16 54 H 0.06 0.03 8.10 -2.39 -0.02 0.01 16 Total: 0.00 -28.81 437.21 0.39 -28.42 By element: Atomic # 1 Polarization: -16.09 SS G_CDS: -1.02 Total: -17.11 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.03 Total: 12.17 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -3.58 Total: -4.37 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -2.16 Total: -17.91 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.11 Total: -1.20 kcal Total: -28.81 0.39 -28.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_12335838.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.372 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds