Wall clock time and date at job start Sun Mar 7 2021 07:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45206 * 109.46850 * 2 1 4 4 C 1.34224 * 116.99841 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00059 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47060 * 60.00008 * 6 4 3 8 8 C 1.53002 * 109.47419 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47415 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46978 * 300.00098 * 9 8 6 11 11 H 1.09002 * 109.46838 * 299.99316 * 10 9 8 12 12 C 1.53000 * 109.46806 * 179.97438 * 10 9 8 13 13 N 1.46497 * 109.46926 * 174.99580 * 12 10 9 14 14 C 1.34776 * 119.99939 * 180.02562 * 13 12 10 15 15 O 1.21638 * 120.00416 * 359.97438 * 14 13 12 16 16 C 1.47061 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.35869 * 125.42537 * 180.02562 * 16 14 13 18 18 C 1.41589 * 107.73105 * 180.02562 * 17 16 14 19 19 C 1.40063 * 133.38552 * 179.97438 * 18 17 16 20 20 C 1.36475 * 119.83023 * 180.02562 * 19 18 17 21 21 C 1.38903 * 120.61522 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.67235 * 180.02562 * 21 20 19 23 23 O 1.42904 * 109.47236 * 120.01955 * 22 21 20 24 24 Si 1.86303 * 109.47491 * 0.02562 * 22 21 20 25 25 C 1.37707 * 120.64940 * 0.02562 * 21 20 19 26 26 C 1.39186 * 119.80890 * 359.97438 * 25 21 20 27 27 N 1.37488 * 133.18353 * 180.34332 * 26 25 21 28 28 C 1.53002 * 109.47128 * 59.99726 * 10 9 8 29 29 C 1.52992 * 109.47106 * 300.00123 * 28 10 9 30 30 H 1.09002 * 109.47315 * 300.00042 * 1 2 3 31 31 H 1.09004 * 109.47695 * 60.00078 * 1 2 3 32 32 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47315 * 239.99958 * 2 1 3 34 34 H 1.08991 * 109.47430 * 119.99794 * 2 1 3 35 35 H 1.09000 * 109.46986 * 300.00096 * 8 6 4 36 36 H 1.09002 * 109.47075 * 59.99368 * 8 6 4 37 37 H 1.09002 * 109.47045 * 59.99931 * 9 8 6 38 38 H 1.08998 * 109.47171 * 179.97438 * 9 8 6 39 39 H 1.08991 * 109.47625 * 294.99856 * 12 10 9 40 40 H 1.09002 * 109.47069 * 55.00175 * 12 10 9 41 41 H 0.96997 * 120.00347 * 0.02562 * 13 12 10 42 42 H 1.07995 * 126.13395 * 0.02562 * 17 16 14 43 43 H 1.08000 * 120.08381 * 359.97438 * 19 18 17 44 44 H 1.07998 * 119.69382 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.46985 * 240.01665 * 22 21 20 46 46 H 0.96691 * 113.99672 * 299.99258 * 23 22 21 47 47 H 1.48502 * 109.99756 * 58.67986 * 24 22 21 48 48 H 1.48496 * 110.00268 * 180.02562 * 24 22 21 49 49 H 1.07995 * 120.09463 * 179.97438 * 25 21 20 50 50 H 0.96990 * 125.60816 * 359.93878 * 27 26 25 51 51 H 1.09002 * 109.47070 * 60.00059 * 28 10 9 52 52 H 1.08996 * 109.46550 * 179.97438 * 28 10 9 53 53 H 1.09002 * 109.47103 * 299.99915 * 29 28 10 54 54 H 1.08998 * 109.46862 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 1 3.5849 3.4699 0.8888 8 6 5.4485 2.8575 -0.0023 9 6 6.0333 4.2714 -0.0036 10 6 5.5607 5.0176 -1.2529 11 1 5.8960 4.4849 -2.1428 12 6 6.1450 6.4316 -1.2538 13 7 5.7913 7.1053 -2.5057 14 6 6.2014 8.3694 -2.7299 15 8 6.8648 8.9512 -1.8927 16 6 5.8459 9.0458 -3.9864 17 6 6.1995 10.3129 -4.3261 18 6 5.6614 10.5818 -5.6079 19 6 5.6972 11.6996 -6.4512 20 6 5.0665 11.6579 -7.6607 21 6 4.3880 10.5155 -8.0657 22 6 3.6994 10.4925 -9.4059 23 8 4.2543 9.4487 -10.2088 24 14 3.9464 12.1301 -10.2593 25 6 4.3384 9.4038 -7.2545 26 6 4.9739 9.4219 -6.0163 27 7 5.1047 8.4918 -5.0122 28 6 4.0327 5.0976 -1.2517 29 6 3.4481 3.6838 -1.2504 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8899 35 1 5.7852 2.3255 0.8875 36 1 5.7838 2.3252 -0.8925 37 1 5.6980 4.8040 0.8864 38 1 7.1218 4.2143 -0.0040 39 1 5.7395 6.9929 -0.4121 40 1 7.2299 6.3765 -1.1649 41 1 5.2620 6.6416 -3.1733 42 1 6.7857 10.9930 -3.7260 43 1 6.2219 12.5924 -6.1447 44 1 5.0951 12.5211 -8.3090 45 1 2.6336 10.3139 -9.2637 46 1 5.2019 9.5432 -10.3765 47 1 5.3967 12.3999 -10.4304 48 1 3.2715 12.1205 -11.5820 49 1 3.8080 8.5205 -7.5782 50 1 4.7343 7.5954 -5.0210 51 1 3.6975 5.6302 -0.3618 52 1 3.6962 5.6296 -2.1415 53 1 3.7833 3.1511 -2.1404 54 1 2.3596 3.7408 -1.2500 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13158378.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:14:51 Heat of formation + Delta-G solvation = -110.189027 kcal Electronic energy + Delta-G solvation = -34791.917404 eV Core-core repulsion = 30080.865246 eV Total energy + Delta-G solvation = -4711.052159 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.69918 -41.85478 -40.76493 -39.53223 -38.95851 -37.76049 -36.97383 -36.08388 -33.36925 -33.14756 -32.35942 -31.78087 -31.07241 -30.39511 -28.12025 -26.56045 -24.90223 -24.11214 -23.80480 -23.29290 -22.87496 -21.97773 -21.66865 -21.25429 -20.72987 -19.57549 -18.76004 -18.48598 -17.85113 -17.70046 -17.61478 -17.03451 -16.80014 -16.71778 -16.24122 -15.97612 -15.70637 -15.54531 -15.43402 -15.18799 -15.00301 -14.88883 -14.74270 -14.67599 -14.63045 -14.48126 -14.02573 -13.89872 -13.71669 -13.55436 -13.28590 -13.15892 -13.02785 -12.92306 -12.58915 -12.55746 -12.49846 -12.29322 -12.13732 -12.10128 -11.91097 -11.60918 -11.56195 -11.51592 -11.44677 -11.18515 -11.12937 -10.96972 -10.59339 -10.29836 -9.32462 -8.81928 -4.85789 -0.36545 0.53719 0.95202 1.07859 1.35423 1.61890 1.66409 1.75479 1.97339 2.03335 2.18566 2.77563 3.38749 3.42962 3.54086 3.59483 3.63160 3.68603 3.74692 3.81626 3.92821 3.95069 4.01233 4.05523 4.11299 4.24629 4.26385 4.29182 4.30801 4.35688 4.41970 4.46455 4.47756 4.54779 4.63270 4.65574 4.71593 4.79712 4.80965 4.86330 4.89828 4.93728 5.00075 5.04817 5.08379 5.09834 5.12567 5.18866 5.20961 5.29907 5.35065 5.41368 5.41941 5.47326 5.54418 5.58836 5.98940 6.24915 6.43233 6.51187 6.63826 6.94897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.126 0.874 8 C -0.100 4.100 9 C -0.107 4.107 10 C -0.093 4.093 11 H 0.087 0.913 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.585 3.415 15 O -0.561 6.561 16 C 0.011 3.989 17 C -0.119 4.119 18 C -0.135 4.135 19 C -0.059 4.059 20 C -0.147 4.147 21 C -0.087 4.087 22 C -0.079 4.079 23 O -0.548 6.548 24 Si 0.767 3.233 25 C -0.109 4.109 26 C 0.107 3.893 27 N -0.564 5.564 28 C -0.110 4.110 29 C -0.105 4.105 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.410 0.590 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.129 0.871 46 H 0.386 0.614 47 H -0.284 1.284 48 H -0.306 1.306 49 H 0.136 0.864 50 H 0.431 0.569 51 H 0.076 0.924 52 H 0.080 0.920 53 H 0.067 0.933 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 0.603 -0.411 4.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.144 0.856 8 C -0.137 4.137 9 C -0.144 4.144 10 C -0.112 4.112 11 H 0.105 0.895 12 C 0.002 3.998 13 N -0.362 5.362 14 C 0.371 3.629 15 O -0.439 6.439 16 C -0.099 4.099 17 C -0.146 4.146 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.166 4.166 21 C -0.089 4.089 22 C -0.188 4.188 23 O -0.356 6.356 24 Si 0.673 3.327 25 C -0.129 4.129 26 C -0.003 4.003 27 N -0.170 5.170 28 C -0.147 4.147 29 C -0.142 4.142 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.235 0.765 47 H -0.211 1.211 48 H -0.234 1.234 49 H 0.153 0.847 50 H 0.272 0.728 51 H 0.095 0.905 52 H 0.099 0.901 53 H 0.086 0.914 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.554 0.687 -0.382 4.621 hybrid contribution 0.656 -2.032 -0.407 2.173 sum -3.898 -1.344 -0.788 4.198 Atomic orbital electron populations 1.21820 0.90633 1.04237 1.03782 1.23229 0.96953 0.79494 1.02318 1.86518 1.24377 1.33299 1.83479 1.24453 0.80487 0.93490 0.70911 1.90670 1.61170 1.44610 1.46863 1.21271 0.96606 0.88072 1.03602 0.85640 1.21383 0.91548 0.97793 1.03013 1.21474 1.01198 0.93868 0.97904 1.21403 0.96092 0.93515 1.00152 0.89504 1.21502 1.00314 0.92614 0.85389 1.45781 1.55280 1.13384 1.21751 1.17265 0.79266 0.81786 0.84549 1.90864 1.40478 1.66353 1.46234 1.20001 1.03675 0.95475 0.90747 1.21099 1.02588 0.95173 0.95717 1.18447 1.03685 0.95659 0.96124 1.20626 0.97458 0.97058 0.92592 1.20684 1.00181 0.98163 0.97542 1.20078 0.98659 0.93797 0.96365 1.25204 1.01242 1.02305 0.90050 1.86566 1.29421 1.47960 1.71683 0.93946 0.79775 0.79335 0.79656 1.19984 1.02129 1.00002 0.90826 1.18440 1.00751 0.89761 0.91383 1.41774 1.46487 1.14996 1.13742 1.21614 0.93652 0.95644 1.03830 1.21494 1.01777 0.95834 0.95129 0.91249 0.91120 0.88667 0.91536 0.91647 0.91722 0.91854 0.90255 0.90507 0.91135 0.91633 0.75303 0.82759 0.83550 0.83673 0.85373 0.76464 1.21054 1.23424 0.84658 0.72834 0.90521 0.90131 0.91432 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.94 10.12 -51.36 -0.52 -1.46 16 4 C 0.46 1.66 7.25 71.24 0.52 2.18 16 5 O -0.54 -5.70 15.73 21.96 0.35 -5.36 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 7 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 8 C -0.10 0.30 4.49 30.59 0.14 0.43 16 9 C -0.11 0.71 5.20 30.59 0.16 0.87 16 10 C -0.09 0.77 2.23 -10.79 -0.02 0.75 16 11 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 12 C 0.12 -0.56 5.06 86.38 0.44 -0.13 16 13 N -0.71 3.07 5.28 -466.74 -2.46 0.61 16 14 C 0.58 1.96 7.80 86.56 0.68 2.63 16 15 O -0.56 -6.63 16.84 -4.15 -0.07 -6.70 16 16 C 0.01 0.02 6.97 39.91 0.28 0.30 16 17 C -0.12 -0.49 10.53 22.55 0.24 -0.26 16 18 C -0.13 -0.38 6.16 -21.36 -0.13 -0.52 16 19 C -0.06 0.01 10.06 22.30 0.22 0.24 16 20 C -0.15 0.29 8.59 22.02 0.19 0.48 16 21 C -0.09 0.12 5.40 -19.83 -0.11 0.02 16 22 C -0.08 0.19 2.81 71.23 0.20 0.39 16 23 O -0.55 -0.37 12.76 -148.98 -1.90 -2.27 16 24 Si 0.77 -2.37 29.75 68.60 2.04 -0.33 16 25 C -0.11 0.07 9.61 22.37 0.22 0.29 16 26 C 0.11 0.09 7.25 39.13 0.28 0.37 16 27 N -0.56 1.53 6.07 -177.17 -1.08 0.46 16 28 C -0.11 1.05 5.08 30.59 0.16 1.20 16 29 C -0.10 0.73 5.13 30.59 0.16 0.89 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 35 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 36 H 0.06 -0.04 8.10 -2.39 -0.02 -0.06 16 37 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.08 -0.49 8.14 -2.39 -0.02 -0.50 16 39 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.41 -4.23 6.71 -92.71 -0.62 -4.85 16 42 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.15 -0.59 8.06 -2.91 -0.02 -0.62 16 44 H 0.15 -0.87 4.82 -2.91 -0.01 -0.88 16 45 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 46 H 0.39 -1.70 8.70 -74.06 -0.64 -2.34 16 47 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 48 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 49 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 50 H 0.43 -4.11 8.12 -92.72 -0.75 -4.86 16 51 H 0.08 -0.71 8.14 -2.39 -0.02 -0.72 16 52 H 0.08 -0.95 7.18 -2.39 -0.02 -0.96 16 53 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 54 H 0.08 -0.58 8.11 -2.39 -0.02 -0.60 16 Total: 0.00 -24.32 437.30 0.08 -24.25 By element: Atomic # 1 Polarization: -20.38 SS G_CDS: -1.04 Total: -21.41 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.76 Total: 12.21 kcal Atomic # 7 Polarization: 4.61 SS G_CDS: -3.54 Total: 1.07 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -2.14 Total: -15.78 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.04 Total: -0.33 kcal Total: -24.32 0.08 -24.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13158378.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.943 kcal (2) G-P(sol) polarization free energy of solvation -24.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds