Wall clock time and date at job start Sun Mar 7 2021 07:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46915 * 2 1 4 4 C 1.34238 * 116.99846 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99397 * 0.02562 * 4 3 2 6 6 C 1.50690 * 119.99986 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.47434 * 300.00560 * 6 4 3 8 8 C 1.53007 * 109.47242 * 60.00069 * 6 4 3 9 9 C 1.52999 * 109.47378 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47186 * 300.00347 * 9 8 6 11 11 H 1.09001 * 109.47634 * 299.99816 * 10 9 8 12 12 C 1.53005 * 109.47391 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.46612 * 65.00098 * 12 10 9 14 14 C 1.34780 * 119.99757 * 180.02562 * 13 12 10 15 15 O 1.21510 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.48171 * 119.99633 * 179.97438 * 14 13 12 17 17 N 1.32712 * 119.72577 * 0.02562 * 16 14 13 18 18 C 1.31524 * 121.64652 * 179.97438 * 17 16 14 19 19 C 1.38560 * 120.89865 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.32502 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47197 * 119.99389 * 20 19 18 22 22 Si 1.86303 * 109.46959 * 359.97438 * 20 19 18 23 23 C 1.38627 * 119.35492 * 359.97438 * 19 18 17 24 24 C 1.38587 * 118.48695 * 0.02562 * 23 19 18 25 25 C 1.53006 * 109.47427 * 59.99919 * 10 9 8 26 26 C 1.52999 * 109.47003 * 300.00193 * 25 10 9 27 27 H 1.08994 * 109.47505 * 300.00084 * 1 2 3 28 28 H 1.09004 * 109.46965 * 59.99950 * 1 2 3 29 29 H 1.09004 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47505 * 239.99915 * 2 1 3 31 31 H 1.08996 * 109.46649 * 120.00000 * 2 1 3 32 32 H 1.09000 * 109.47220 * 300.00157 * 8 6 4 33 33 H 1.09005 * 109.46505 * 59.99922 * 8 6 4 34 34 H 1.08996 * 109.47100 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47014 * 59.99847 * 9 8 6 36 36 H 1.09000 * 109.47070 * 305.00321 * 12 10 9 37 37 H 1.09001 * 109.47599 * 184.99644 * 12 10 9 38 38 H 0.97002 * 119.99927 * 359.97438 * 13 12 10 39 39 H 1.07995 * 119.55324 * 179.71437 * 18 17 16 40 40 H 1.09001 * 109.47003 * 240.00079 * 20 19 18 41 41 H 0.96703 * 114.00098 * 180.02562 * 21 20 19 42 42 H 1.48499 * 109.99814 * 60.00020 * 22 20 19 43 43 H 1.48491 * 110.00260 * 181.31865 * 22 20 19 44 44 H 1.08007 * 120.75557 * 180.02562 * 23 19 18 45 45 H 1.08003 * 120.47095 * 179.97438 * 24 23 19 46 46 H 1.09005 * 109.46698 * 59.99863 * 25 10 9 47 47 H 1.09000 * 109.47401 * 179.97438 * 25 10 9 48 48 H 1.08997 * 109.47090 * 180.02562 * 26 25 10 49 49 H 1.09010 * 109.46873 * 299.99844 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5851 3.4691 -0.8904 8 6 3.4486 3.6851 1.2486 9 6 4.0338 5.0987 1.2484 10 6 5.5617 5.0181 1.2494 11 1 5.8970 4.4863 2.1398 12 6 6.1470 6.4318 1.2486 13 7 5.7937 7.1072 2.4996 14 6 6.2039 8.3717 2.7219 15 8 6.8663 8.9516 1.8843 16 6 5.8460 9.0551 3.9870 17 7 5.1219 8.4167 4.8977 18 6 4.7832 8.9867 6.0335 19 6 5.1730 10.2846 6.3223 20 6 4.7772 10.9254 7.6276 21 8 5.9520 11.2880 8.3558 22 14 3.7712 9.7204 8.6311 23 6 5.9305 10.9881 5.3987 24 6 6.2726 10.3623 4.2105 25 6 6.0339 4.2705 0.0008 26 6 5.4486 2.8568 0.0010 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3601 3.7421 1.2481 33 1 3.7842 3.1534 2.1390 34 1 3.6978 5.6312 2.1381 35 1 3.6987 5.6306 0.3579 36 1 5.7419 6.9923 0.4061 37 1 7.2320 6.3758 1.1598 38 1 5.2639 6.6447 3.1677 39 1 4.1891 8.4375 6.7488 40 1 4.1829 11.8173 7.4291 41 1 5.7725 11.7066 9.2089 42 1 4.5699 8.4995 8.9084 43 1 3.3478 10.3510 9.9070 44 1 6.2469 12.0009 5.6006 45 1 6.8615 10.8807 3.4682 46 1 5.6986 4.8024 -0.8897 47 1 7.1224 4.2135 0.0013 48 1 5.7853 2.3241 -0.8883 49 1 5.7838 2.3250 0.8915 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13287726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:11 Heat of formation + Delta-G solvation = -131.822327 kcal Electronic energy + Delta-G solvation = -30051.951464 eV Core-core repulsion = 25751.951115 eV Total energy + Delta-G solvation = -4300.000349 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.90730 -41.76121 -40.43468 -39.39630 -37.95547 -37.71890 -36.01185 -34.05352 -33.11179 -32.93756 -32.15811 -31.71300 -28.49768 -27.00531 -25.00856 -24.72457 -23.79063 -23.62118 -23.00117 -21.75929 -21.59348 -20.74924 -19.28379 -18.72292 -18.66329 -18.12194 -17.66100 -17.56954 -16.90173 -16.77505 -16.59522 -16.18421 -15.93161 -15.52648 -15.31741 -15.25733 -14.98277 -14.88014 -14.65970 -14.47985 -14.26189 -14.03137 -13.96797 -13.81669 -13.66662 -13.49562 -13.22893 -12.98615 -12.88125 -12.55711 -12.54413 -12.24671 -12.10684 -12.08966 -11.86336 -11.57376 -11.52207 -11.42115 -11.16467 -11.08762 -11.07491 -10.78286 -10.56415 -10.30952 -10.04479 -4.92948 -0.58287 0.08966 1.11523 1.24279 1.55857 1.61255 1.65550 1.96410 1.98939 2.64653 2.95110 3.26901 3.43609 3.59884 3.63417 3.67014 3.70885 3.80364 3.86762 3.92115 3.96348 3.99419 4.04621 4.16480 4.21037 4.29012 4.32863 4.39532 4.40472 4.46743 4.52468 4.59061 4.66919 4.71519 4.81783 4.85615 4.89517 4.91077 4.97479 5.00209 5.09854 5.12397 5.14016 5.18935 5.23957 5.31029 5.36386 5.39560 5.45251 5.51919 6.28250 6.54585 6.62110 6.67520 7.05672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.076 4.076 7 H 0.127 0.873 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.093 4.093 11 H 0.083 0.917 12 C 0.123 3.877 13 N -0.698 5.698 14 C 0.568 3.432 15 O -0.568 6.568 16 C 0.062 3.938 17 N -0.457 5.457 18 C 0.100 3.900 19 C -0.105 4.105 20 C -0.082 4.082 21 O -0.557 6.557 22 Si 0.762 3.238 23 C -0.055 4.055 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.099 4.099 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.185 0.815 40 H 0.110 0.890 41 H 0.400 0.600 42 H -0.294 1.294 43 H -0.282 1.282 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 2.310 2.806 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.095 4.095 7 H 0.145 0.855 8 C -0.141 4.141 9 C -0.147 4.147 10 C -0.112 4.112 11 H 0.101 0.899 12 C 0.000 4.000 13 N -0.349 5.349 14 C 0.353 3.647 15 O -0.447 6.447 16 C -0.076 4.076 17 N -0.169 5.169 18 C -0.060 4.060 19 C -0.107 4.107 20 C -0.191 4.191 21 O -0.368 6.368 22 Si 0.667 3.333 23 C -0.080 4.080 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.201 0.799 40 H 0.128 0.872 41 H 0.251 0.749 42 H -0.221 1.221 43 H -0.209 1.209 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.491 0.808 2.191 6.899 hybrid contribution 1.102 0.956 1.122 1.840 sum -5.390 1.765 3.313 6.568 Atomic orbital electron populations 1.21820 0.90611 1.04220 1.03801 1.23229 0.96975 0.79519 1.02298 1.86521 1.24343 1.33276 1.83484 1.24431 0.80494 0.93443 0.70885 1.90665 1.61184 1.44577 1.46886 1.21267 0.96551 0.88108 1.03584 0.85511 1.21489 1.01811 0.95735 0.95108 1.21599 0.93583 0.95745 1.03765 1.21396 0.96251 0.93508 1.00050 0.89892 1.21533 1.00160 0.92755 0.85592 1.45826 1.54246 1.13334 1.21477 1.18038 0.79263 0.82227 0.85150 1.90788 1.40707 1.66617 1.46574 1.21122 0.98579 0.93271 0.94600 1.67506 1.10358 1.36980 1.02012 1.22937 0.97451 0.91728 0.93838 1.20801 0.98338 0.95273 0.96291 1.24927 0.92908 1.07464 0.93851 1.86530 1.30883 1.82359 1.37012 0.94227 0.83287 0.75744 0.80060 1.21733 0.93696 1.01447 0.91162 1.22285 0.98522 0.94469 0.98453 1.21474 1.01130 0.93914 0.97817 1.21381 0.91629 0.97723 1.02985 0.91104 0.91234 0.88673 0.91651 0.91568 0.89726 0.91606 0.90345 0.90418 0.91050 0.91787 0.74279 0.79852 0.87206 0.74873 1.22105 1.20873 0.82120 0.83212 0.90119 0.90580 0.91593 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.28 10.12 -51.49 -0.52 -1.80 16 4 C 0.46 2.20 7.25 71.23 0.52 2.72 16 5 O -0.54 -6.26 15.73 21.97 0.35 -5.92 16 6 C -0.08 0.15 2.63 -11.54 -0.03 0.12 16 7 H 0.13 -0.65 8.14 -2.38 -0.02 -0.66 16 8 C -0.10 0.48 5.14 30.60 0.16 0.64 16 9 C -0.11 0.69 5.08 30.59 0.16 0.85 16 10 C -0.09 0.46 2.23 -10.79 -0.02 0.44 16 11 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 12 C 0.12 -0.13 5.06 86.38 0.44 0.31 16 13 N -0.70 -0.78 5.27 -465.65 -2.46 -3.24 16 14 C 0.57 4.03 7.81 86.88 0.68 4.71 16 15 O -0.57 -7.73 16.32 -3.75 -0.06 -7.79 16 16 C 0.06 0.31 6.75 41.91 0.28 0.60 16 17 N -0.46 -1.17 9.54 -184.91 -1.76 -2.94 16 18 C 0.10 -0.07 9.84 84.82 0.83 0.76 16 19 C -0.10 0.11 5.44 -19.69 -0.11 0.01 16 20 C -0.08 0.43 2.82 71.24 0.20 0.63 16 21 O -0.56 1.16 12.75 -148.98 -1.90 -0.74 16 22 Si 0.76 -4.76 29.82 68.60 2.05 -2.71 16 23 C -0.05 -0.01 9.76 22.45 0.22 0.21 16 24 C -0.12 -0.40 9.63 22.61 0.22 -0.19 16 25 C -0.11 0.49 5.20 30.60 0.16 0.65 16 26 C -0.10 0.13 4.49 30.59 0.14 0.26 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 32 H 0.08 -0.42 8.11 -2.39 -0.02 -0.44 16 33 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 34 H 0.08 -0.54 7.18 -2.39 -0.02 -0.56 16 35 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.42 -0.84 6.98 -92.71 -0.65 -1.49 16 39 H 0.19 -1.10 4.89 -2.91 -0.01 -1.12 16 40 H 0.11 -1.10 7.96 -2.39 -0.02 -1.11 16 41 H 0.40 -3.97 8.74 -74.05 -0.65 -4.62 16 42 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 43 H -0.28 0.50 7.11 99.48 0.71 1.20 16 44 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 45 H 0.15 0.49 7.64 -2.91 -0.02 0.47 16 46 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 47 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.07 0.06 8.10 -2.39 -0.02 0.04 16 49 H 0.06 0.08 8.10 -2.38 -0.02 0.06 16 Total: 0.00 -22.49 401.00 0.42 -22.06 By element: Atomic # 1 Polarization: -11.15 SS G_CDS: -0.29 Total: -11.43 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 5.02 Total: 14.51 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -4.22 Total: -6.18 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -2.14 Total: -16.25 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.05 Total: -2.71 kcal Total: -22.49 0.42 -22.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13287726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.760 kcal (2) G-P(sol) polarization free energy of solvation -22.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds