Wall clock time and date at job start Sun Mar 7 2021 07:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 8 8 C 1.53006 * 109.47239 * 59.99547 * 6 4 3 9 9 C 1.52997 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46978 * 299.99874 * 9 8 6 11 11 H 1.08992 * 109.47056 * 300.00064 * 10 9 8 12 12 C 1.52997 * 109.46978 * 180.02562 * 10 9 8 13 13 N 1.46507 * 109.47321 * 65.00089 * 12 10 9 14 14 C 1.34772 * 120.00342 * 179.97438 * 13 12 10 15 15 O 1.21626 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.47259 * 119.99921 * 180.02562 * 14 13 12 17 17 C 1.36767 * 126.94314 * 359.68804 * 16 14 13 18 18 N 1.34663 * 108.39471 * 179.87136 * 17 16 14 19 19 C 1.46499 * 124.84739 * 180.13788 * 18 17 16 20 20 C 1.36440 * 110.29752 * 0.40836 * 18 17 16 21 21 C 1.50710 * 125.57015 * 179.73088 * 20 18 17 22 22 O 1.42896 * 109.47112 * 29.99768 * 21 20 18 23 23 Si 1.86301 * 109.47021 * 149.99987 * 21 20 18 24 24 C 1.34480 * 108.86159 * 359.74911 * 20 18 17 25 25 C 1.52996 * 109.46891 * 60.00410 * 10 9 8 26 26 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 27 27 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 28 28 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46939 * 240.00280 * 2 1 3 31 31 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 32 32 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 33 33 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 34 34 H 1.09002 * 109.47045 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47375 * 59.99966 * 9 8 6 36 36 H 1.08994 * 109.47445 * 185.00212 * 12 10 9 37 37 H 1.09000 * 109.47459 * 305.00519 * 12 10 9 38 38 H 0.97003 * 119.99307 * 0.02562 * 13 12 10 39 39 H 1.07996 * 125.80208 * 359.97438 * 17 16 14 40 40 H 1.08997 * 109.47216 * 270.30987 * 19 18 17 41 41 H 1.08999 * 109.47518 * 30.31288 * 19 18 17 42 42 H 1.09001 * 109.46748 * 150.31078 * 19 18 17 43 43 H 1.08997 * 109.46947 * 270.00241 * 21 20 18 44 44 H 0.96710 * 113.99937 * 60.00153 * 22 21 20 45 45 H 1.48500 * 109.99783 * 180.02562 * 23 21 20 46 46 H 1.48496 * 109.99837 * 301.31637 * 23 21 20 47 47 H 1.08004 * 126.84043 * 180.02562 * 24 20 18 48 48 H 1.09004 * 109.47368 * 179.97438 * 25 10 9 49 49 H 1.09001 * 109.47372 * 59.99964 * 25 10 9 50 50 H 1.09002 * 109.47153 * 59.99773 * 26 6 4 51 51 H 1.09001 * 109.46832 * 299.99964 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 -0.8895 8 6 3.4497 3.6838 1.2499 9 6 4.0339 5.0978 1.2501 10 6 5.5619 5.0183 1.2492 11 1 5.8985 4.4859 2.1387 12 6 6.1462 6.4323 1.2500 13 7 5.7939 7.1055 2.5027 14 6 6.2043 8.3695 2.7269 15 8 6.8667 8.9515 1.8892 16 6 5.8507 9.0459 3.9863 17 6 5.1124 8.5317 5.0164 18 7 5.0202 9.4666 5.9812 19 6 4.3088 9.2927 7.2500 20 6 5.6790 10.6009 5.6057 21 6 5.7890 11.8622 6.4232 22 8 5.7563 11.5331 7.8134 23 14 7.3934 12.7217 6.0260 24 6 6.2137 10.4097 4.3866 25 6 6.0329 4.2721 -0.0007 26 6 5.4486 2.8575 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7860 3.1512 2.1395 33 1 2.3611 3.7408 1.2504 34 1 3.6987 5.6293 2.1408 35 1 3.6973 5.6303 0.3606 36 1 7.2310 6.3772 1.1597 37 1 5.7396 6.9940 0.4090 38 1 5.2659 6.6412 3.1709 39 1 4.6787 7.5432 5.0509 40 1 3.2716 9.6059 7.1308 41 1 4.3401 8.2434 7.5434 42 1 4.7854 9.8996 8.0198 43 1 4.9547 12.5225 6.1865 44 1 6.4717 10.9467 8.0957 45 1 7.5143 13.9667 6.8262 46 1 8.5375 11.8200 6.3145 47 1 6.7951 11.1188 3.8161 48 1 7.1214 4.2157 -0.0017 49 1 5.6962 4.8045 -0.8903 50 1 5.7845 2.3257 -0.8903 51 1 5.7846 2.3250 0.8896 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13287730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:15 Heat of formation + Delta-G solvation = -118.701685 kcal Electronic energy + Delta-G solvation = -30869.713860 eV Core-core repulsion = 26542.970986 eV Total energy + Delta-G solvation = -4326.742874 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.43392 -41.81672 -40.44215 -39.30299 -37.94386 -37.71250 -35.80903 -33.77305 -33.10816 -32.32964 -31.72925 -31.22078 -28.13430 -27.11087 -26.12937 -24.69062 -23.78320 -23.55358 -22.86228 -21.58673 -21.06557 -20.77334 -20.38638 -19.03653 -18.72317 -17.66758 -17.59184 -17.44647 -17.00310 -16.80283 -16.58693 -16.31291 -15.83971 -15.61935 -15.39820 -15.22398 -14.99140 -14.91659 -14.72946 -14.61196 -14.44245 -14.10782 -13.83318 -13.68706 -13.50666 -13.41176 -13.23315 -13.19297 -13.02613 -12.95377 -12.84270 -12.55946 -12.35791 -12.21731 -12.08454 -11.96758 -11.82839 -11.57711 -11.42862 -11.20882 -11.08840 -10.93150 -10.88391 -10.07608 -9.52652 -9.18350 -4.88689 0.77650 1.04768 1.11089 1.46518 1.63872 1.64913 1.82162 2.08372 2.35647 2.61159 3.16957 3.44580 3.58273 3.61922 3.68897 3.88646 3.91655 3.95738 3.99150 4.01461 4.03960 4.17565 4.28396 4.32157 4.36437 4.41859 4.46194 4.47812 4.49866 4.52920 4.53225 4.70846 4.75985 4.81148 4.85456 4.88044 4.88908 4.97466 5.00788 5.02395 5.11497 5.12477 5.14840 5.20760 5.24652 5.36012 5.43945 5.48384 5.57220 5.68732 5.98899 6.25417 6.33020 6.67034 6.69400 7.39763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.109 4.109 10 C -0.091 4.091 11 H 0.087 0.913 12 C 0.128 3.872 13 N -0.715 5.715 14 C 0.586 3.414 15 O -0.595 6.595 16 C -0.261 4.261 17 C 0.070 3.930 18 N -0.427 5.427 19 C 0.046 3.954 20 C -0.024 4.024 21 C -0.043 4.043 22 O -0.539 6.539 23 Si 0.772 3.228 24 C -0.155 4.155 25 C -0.107 4.107 26 C -0.099 4.099 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.207 0.793 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.388 0.612 45 H -0.288 1.288 46 H -0.295 1.295 47 H 0.154 0.846 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -1.419 3.648 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.109 4.109 11 H 0.105 0.895 12 C 0.004 3.996 13 N -0.367 5.367 14 C 0.376 3.624 15 O -0.477 6.477 16 C -0.271 4.271 17 C -0.067 4.067 18 N -0.101 5.101 19 C -0.094 4.094 20 C -0.134 4.134 21 C -0.152 4.152 22 O -0.347 6.347 23 Si 0.676 3.324 24 C -0.179 4.179 25 C -0.145 4.145 26 C -0.136 4.136 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.223 0.777 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.238 0.762 45 H -0.215 1.215 46 H -0.222 1.222 47 H 0.172 0.828 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.396 -0.691 3.686 6.571 hybrid contribution 0.089 -1.430 0.875 1.679 sum -5.307 -2.121 4.561 7.312 Atomic orbital electron populations 1.21819 0.90639 1.04217 1.03784 1.23231 0.96950 0.79519 1.02313 1.86521 1.24366 1.33273 1.83494 1.24440 0.80477 0.93455 0.70888 1.90667 1.61167 1.44598 1.46879 1.21273 0.96564 0.88098 1.03660 0.85765 1.21499 1.01752 0.95813 0.95062 1.21600 0.93587 0.95584 1.03831 1.21373 0.96158 0.93517 0.99902 0.89509 1.21348 0.99624 0.92573 0.86029 1.45688 1.56131 1.13721 1.21172 1.17665 0.78063 0.81242 0.85411 1.90754 1.41887 1.66802 1.48244 1.20352 1.12474 0.97420 0.96893 1.22405 1.00409 0.96240 0.87682 1.43719 1.39577 1.10752 1.16006 1.22728 0.97865 1.05663 0.83109 1.20796 1.03850 0.91146 0.97569 1.24723 1.14255 0.95358 0.80910 1.86537 1.54071 1.70797 1.23288 0.93317 0.72163 0.76852 0.90018 1.21818 1.04591 0.96062 0.95473 1.21488 1.01077 0.93946 0.98020 1.21384 0.91605 0.97683 1.02970 0.91085 0.91283 0.88681 0.91698 0.91494 0.91305 0.89834 0.89845 0.90847 0.92624 0.92090 0.75131 0.77667 0.90248 0.87746 0.87194 0.84965 0.76233 1.21508 1.22198 0.82840 0.90745 0.90497 0.91825 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.60 10.29 71.98 0.74 1.34 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.04 10.12 -51.44 -0.52 -1.57 16 4 C 0.46 1.87 7.26 71.23 0.52 2.39 16 5 O -0.54 -5.90 15.73 21.97 0.35 -5.56 16 6 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 8 C -0.10 0.65 5.13 30.60 0.16 0.80 16 9 C -0.11 0.88 5.08 30.59 0.16 1.04 16 10 C -0.09 0.58 2.22 -10.80 -0.02 0.55 16 11 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 12 C 0.13 -0.17 5.07 86.38 0.44 0.27 16 13 N -0.72 0.95 5.27 -466.53 -2.46 -1.51 16 14 C 0.59 4.11 7.81 86.62 0.68 4.78 16 15 O -0.59 -9.86 16.97 -4.11 -0.07 -9.93 16 16 C -0.26 -0.96 6.29 -19.04 -0.12 -1.08 16 17 C 0.07 -0.25 10.83 83.91 0.91 0.66 16 18 N -0.43 1.30 3.09 -533.25 -1.65 -0.34 16 19 C 0.05 -0.40 10.71 127.77 1.37 0.97 16 20 C -0.02 0.00 6.14 40.98 0.25 0.25 16 21 C -0.04 0.10 2.98 71.24 0.21 0.31 16 22 O -0.54 1.46 9.95 -148.98 -1.48 -0.02 16 23 Si 0.77 -0.75 31.12 68.60 2.13 1.38 16 24 C -0.16 -0.63 9.49 23.62 0.22 -0.41 16 25 C -0.11 0.52 5.21 30.61 0.16 0.68 16 26 C -0.10 0.18 4.50 30.61 0.14 0.32 16 27 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.06 0.11 8.13 -2.39 -0.02 0.09 16 31 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 32 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.08 -0.54 8.11 -2.39 -0.02 -0.56 16 34 H 0.08 -0.87 7.18 -2.39 -0.02 -0.89 16 35 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.41 -3.37 6.60 -92.71 -0.61 -3.98 16 39 H 0.21 -2.51 7.45 -2.91 -0.02 -2.53 16 40 H 0.08 -0.70 8.14 -2.39 -0.02 -0.71 16 41 H 0.10 -1.35 8.13 -2.39 -0.02 -1.37 16 42 H 0.11 -0.90 4.93 -2.39 -0.01 -0.91 16 43 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 44 H 0.39 -2.87 8.38 -74.05 -0.62 -3.49 16 45 H -0.29 -1.38 7.11 99.48 0.71 -0.68 16 46 H -0.30 -1.59 7.11 99.48 0.71 -0.89 16 47 H 0.15 0.52 6.89 -2.91 -0.02 0.50 16 48 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.08 -0.43 8.14 -2.39 -0.02 -0.44 16 50 H 0.06 0.04 8.10 -2.39 -0.02 0.02 16 51 H 0.06 0.01 8.10 -2.39 -0.02 0.00 16 Total: 0.00 -26.39 410.10 2.26 -24.13 By element: Atomic # 1 Polarization: -19.87 SS G_CDS: -0.26 Total: -20.13 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.22 Total: 13.55 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -4.11 Total: -1.86 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.73 Total: -17.07 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.13 Total: 1.38 kcal Total: -26.39 2.26 -24.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13287730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.574 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds