Wall clock time and date at job start Sun Mar 7 2021 07:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47317 * 2 1 4 4 C 1.34228 * 117.00184 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00388 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99934 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47678 * 59.99423 * 6 4 3 8 8 C 1.53005 * 109.47142 * 179.97438 * 6 4 3 9 9 C 1.52998 * 109.47016 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47564 * 300.00095 * 9 8 6 11 11 H 1.09006 * 109.46716 * 300.00266 * 10 9 8 12 12 C 1.52996 * 109.47270 * 180.02562 * 10 9 8 13 13 N 1.46503 * 109.47014 * 175.00035 * 12 10 9 14 14 C 1.34780 * 119.99768 * 179.97438 * 13 12 10 15 15 O 1.21586 * 120.00015 * 0.02562 * 14 13 12 16 16 C 1.47602 * 119.99872 * 179.97438 * 14 13 12 17 17 C 1.39711 * 120.08750 * 180.25100 * 16 14 13 18 18 C 1.37724 * 119.91234 * 180.29775 * 17 16 14 19 19 C 1.50699 * 119.95718 * 179.74968 * 18 17 16 20 20 O 1.42892 * 109.47249 * 104.72594 * 19 18 17 21 21 Si 1.86298 * 109.47032 * 344.71979 * 19 18 17 22 22 C 1.38975 * 120.08339 * 359.47099 * 18 17 16 23 23 O 1.35709 * 119.91318 * 180.25177 * 22 18 17 24 24 C 1.39025 * 120.17825 * 0.23811 * 22 18 17 25 25 C 1.50698 * 119.95389 * 180.02562 * 24 22 18 26 26 C 1.37675 * 120.08919 * 0.03777 * 24 22 18 27 27 C 1.53005 * 109.47032 * 59.99915 * 10 9 8 28 28 C 1.52999 * 109.46875 * 300.00055 * 27 10 9 29 29 H 1.09003 * 109.46966 * 60.00166 * 1 2 3 30 30 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47591 * 300.00680 * 1 2 3 32 32 H 1.08996 * 109.47591 * 239.99320 * 2 1 3 33 33 H 1.09001 * 109.47337 * 119.99453 * 2 1 3 34 34 H 1.09004 * 109.46690 * 59.99830 * 8 6 4 35 35 H 1.09001 * 109.47200 * 299.99918 * 8 6 4 36 36 H 1.09001 * 109.46881 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.46723 * 60.00412 * 9 8 6 38 38 H 1.08997 * 109.47247 * 54.99762 * 12 10 9 39 39 H 1.09003 * 109.47115 * 294.99981 * 12 10 9 40 40 H 0.96995 * 119.99873 * 359.97438 * 13 12 10 41 41 H 1.08003 * 120.04865 * 0.02562 * 17 16 14 42 42 H 1.09004 * 109.46453 * 224.72662 * 19 18 17 43 43 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 44 44 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 45 45 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 46 46 H 0.96700 * 113.99919 * 89.99725 * 23 22 18 47 47 H 1.08998 * 109.47170 * 89.99941 * 25 24 22 48 48 H 1.08995 * 109.47069 * 209.99446 * 25 24 22 49 49 H 1.08996 * 109.47083 * 329.99396 * 25 24 22 50 50 H 1.07997 * 120.04465 * 180.02562 * 26 24 22 51 51 H 1.08994 * 109.46693 * 60.00365 * 27 10 9 52 52 H 1.08998 * 109.46649 * 180.02562 * 27 10 9 53 53 H 1.08992 * 109.47209 * 299.99803 * 28 27 10 54 54 H 1.09001 * 109.46740 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4699 0.8887 8 6 5.4487 2.8574 -0.0010 9 6 6.0334 4.2712 -0.0023 10 6 5.5619 5.0171 -1.2522 11 1 5.8979 4.4841 -2.1417 12 6 6.1472 6.4306 -1.2537 13 7 5.7944 7.1039 -2.5061 14 6 6.2047 8.3680 -2.7304 15 8 6.8680 8.9494 -1.8936 16 6 5.8498 9.0461 -3.9925 17 6 6.2785 10.3545 -4.2292 18 6 5.9401 10.9860 -5.4054 19 6 6.3973 12.3993 -5.6593 20 8 7.4731 12.3903 -6.5997 21 14 6.9758 13.1615 -4.0608 22 6 5.1824 10.3194 -6.3610 23 8 4.8552 10.9432 -7.5209 24 6 4.7590 9.0152 -6.1318 25 6 3.9381 8.2970 -7.1717 26 6 5.0883 8.3791 -4.9561 27 6 4.0340 5.0971 -1.2523 28 6 3.4493 3.6833 -1.2511 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.7846 2.3247 -0.8908 35 1 5.7846 2.3256 0.8892 36 1 7.1219 4.2141 -0.0018 37 1 5.6974 4.8040 0.8872 38 1 7.2321 6.3748 -1.1642 39 1 5.7417 6.9927 -0.4123 40 1 5.2656 6.6399 -3.1739 41 1 6.8709 10.8718 -3.4889 42 1 5.5685 12.9826 -6.0609 43 1 8.2465 11.8884 -6.3078 44 1 8.0845 12.3574 -3.4868 45 1 7.4287 14.5558 -4.2976 46 1 5.5003 10.8180 -8.2304 47 1 4.6011 7.7681 -7.8563 48 1 3.2763 7.5825 -6.6822 49 1 3.3431 9.0208 -7.7285 50 1 4.7594 7.3658 -4.7791 51 1 3.6981 5.6300 -0.3628 52 1 3.6981 5.6281 -2.1430 53 1 3.7852 3.1504 -2.1406 54 1 2.3607 3.7403 -1.2516 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13287732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:18 Heat of formation + Delta-G solvation = -190.960558 kcal Electronic energy + Delta-G solvation = -34713.450077 eV Core-core repulsion = 30002.091402 eV Total energy + Delta-G solvation = -4711.358675 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.85691 -41.67422 -40.53791 -39.43455 -37.97069 -37.73842 -37.48913 -36.00810 -34.00712 -33.25284 -32.46495 -31.76007 -31.44843 -27.98853 -27.77993 -26.78609 -25.09099 -24.16568 -23.72336 -23.09246 -22.06215 -21.61162 -21.42688 -20.68180 -19.58470 -18.81647 -18.72401 -18.11249 -17.66864 -17.57023 -17.40370 -16.77010 -16.48758 -16.40722 -16.07101 -15.83741 -15.78932 -15.32476 -15.26644 -14.96415 -14.78939 -14.67242 -14.62934 -14.31817 -14.11108 -13.90189 -13.82034 -13.68575 -13.51599 -13.28736 -13.22953 -12.99910 -12.91436 -12.86440 -12.74005 -12.55541 -12.47196 -12.23413 -12.08983 -11.91013 -11.85533 -11.63361 -11.57456 -11.43443 -11.25098 -11.10814 -11.01573 -10.63853 -10.21745 -9.96136 -9.62751 -5.00671 -0.38224 0.08280 1.11376 1.21084 1.51555 1.62369 1.65206 1.84384 2.07192 2.57135 3.15512 3.33843 3.43381 3.48235 3.58387 3.61999 3.68244 3.72166 3.86477 3.95933 3.99777 4.03754 4.04318 4.15604 4.20270 4.28598 4.32520 4.39738 4.41548 4.47790 4.49991 4.52609 4.65478 4.67965 4.73262 4.76858 4.83196 4.83582 4.86444 4.89145 4.98705 5.06015 5.09043 5.11502 5.12747 5.14326 5.19324 5.22762 5.24019 5.32210 5.34773 5.37665 5.45218 5.52689 5.61374 6.39754 6.45357 6.67265 6.71821 7.12981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.544 6.544 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.099 4.099 9 C -0.107 4.107 10 C -0.092 4.092 11 H 0.088 0.912 12 C 0.125 3.875 13 N -0.708 5.708 14 C 0.557 3.443 15 O -0.580 6.580 16 C -0.150 4.150 17 C -0.066 4.066 18 C -0.152 4.152 19 C -0.061 4.061 20 O -0.540 6.540 21 Si 0.744 3.256 22 C 0.157 3.843 23 O -0.497 6.497 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.054 4.054 27 C -0.110 4.110 28 C -0.104 4.104 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.385 0.615 44 H -0.289 1.289 45 H -0.291 1.291 46 H 0.411 0.589 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.164 0.836 51 H 0.075 0.925 52 H 0.084 0.916 53 H 0.068 0.932 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -3.451 -2.436 7.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.137 4.137 9 C -0.145 4.145 10 C -0.111 4.111 11 H 0.106 0.894 12 C 0.001 3.999 13 N -0.361 5.361 14 C 0.346 3.654 15 O -0.461 6.461 16 C -0.153 4.153 17 C -0.085 4.085 18 C -0.153 4.153 19 C -0.172 4.172 20 O -0.348 6.348 21 Si 0.650 3.350 22 C 0.111 3.889 23 O -0.310 6.310 24 C -0.120 4.120 25 C -0.169 4.169 26 C -0.072 4.072 27 C -0.148 4.148 28 C -0.142 4.142 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.234 0.766 44 H -0.216 1.216 45 H -0.219 1.219 46 H 0.272 0.728 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.181 0.819 51 H 0.093 0.907 52 H 0.103 0.897 53 H 0.087 0.913 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.408 -2.494 -1.440 6.126 hybrid contribution 1.444 -1.109 -0.856 2.013 sum -3.963 -3.603 -2.296 5.828 Atomic orbital electron populations 1.21817 0.90643 1.04212 1.03797 1.23224 0.96945 0.79525 1.02300 1.86518 1.24375 1.33261 1.83484 1.24455 0.80477 0.93484 0.70889 1.90668 1.61171 1.44621 1.46886 1.21276 0.96546 0.88079 1.03684 0.85743 1.21380 0.91621 0.97728 1.02967 1.21474 1.01079 0.93939 0.97999 1.21395 0.96212 0.93471 1.00032 0.89371 1.21447 0.99963 0.92694 0.85756 1.45797 1.55323 1.13511 1.21456 1.18362 0.78890 0.81966 0.86223 1.90797 1.40925 1.66514 1.47877 1.19809 1.04261 0.95602 0.95622 1.21118 0.97352 0.94065 0.95963 1.20486 1.01257 0.98018 0.95567 1.24834 0.93066 0.95605 1.03653 1.86575 1.27431 1.76526 1.44231 0.93933 0.86532 0.76148 0.78375 1.18450 0.93066 0.89804 0.87581 1.84626 1.50954 1.74143 1.21296 1.20446 1.00699 0.93243 0.97580 1.20772 0.99051 1.00289 0.96772 1.21363 0.94394 1.00393 0.91054 1.21620 0.93523 0.95648 1.03960 1.21500 1.01810 0.95834 0.95048 0.91062 0.88705 0.91284 0.91496 0.91726 0.91772 0.91868 0.90709 0.90433 0.92155 0.91510 0.74713 0.85119 0.85579 0.76559 1.21599 1.21855 0.72827 0.89883 0.89449 0.91098 0.81906 0.90666 0.89750 0.91285 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.65 10.29 71.98 0.74 1.39 16 2 C 0.05 0.02 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.84 10.12 -51.40 -0.52 -1.36 16 4 C 0.46 1.56 7.25 71.24 0.52 2.07 16 5 O -0.54 -5.58 15.73 21.97 0.35 -5.24 16 6 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 7 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 8 C -0.10 0.29 4.49 30.60 0.14 0.43 16 9 C -0.11 0.68 5.20 30.59 0.16 0.84 16 10 C -0.09 0.75 2.22 -10.79 -0.02 0.73 16 11 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 12 C 0.12 -0.48 5.07 86.38 0.44 -0.05 16 13 N -0.71 2.81 5.23 -466.20 -2.44 0.37 16 14 C 0.56 2.02 7.76 86.71 0.67 2.69 16 15 O -0.58 -7.35 16.34 -3.99 -0.07 -7.41 16 16 C -0.15 -0.14 5.87 -20.08 -0.12 -0.26 16 17 C -0.07 -0.20 8.20 22.50 0.18 -0.02 16 18 C -0.15 -0.17 5.26 -19.81 -0.10 -0.27 16 19 C -0.06 -0.07 2.37 71.24 0.17 0.10 16 20 O -0.54 -1.05 12.88 -148.98 -1.92 -2.97 16 21 Si 0.74 1.63 30.25 68.60 2.08 3.70 16 22 C 0.16 -0.07 6.66 22.64 0.15 0.08 16 23 O -0.50 0.63 11.84 -90.30 -1.07 -0.44 16 24 C -0.12 0.42 5.89 -19.81 -0.12 0.30 16 25 C -0.11 0.83 9.78 71.24 0.70 1.53 16 26 C -0.05 0.26 9.18 22.50 0.21 0.46 16 27 C -0.11 1.07 5.08 30.60 0.16 1.22 16 28 C -0.10 0.76 5.13 30.59 0.16 0.92 16 29 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 33 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.06 -0.05 8.10 -2.39 -0.02 -0.07 16 35 H 0.06 -0.01 8.10 -2.39 -0.02 -0.03 16 36 H 0.07 -0.44 8.14 -2.39 -0.02 -0.45 16 37 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.41 -4.29 5.68 -92.71 -0.53 -4.82 16 41 H 0.13 0.72 4.44 -2.91 -0.01 0.70 16 42 H 0.13 0.08 7.82 -2.38 -0.02 0.06 16 43 H 0.39 -1.20 8.70 -74.06 -0.64 -1.85 16 44 H -0.29 -2.21 6.68 99.48 0.66 -1.54 16 45 H -0.29 -2.44 7.11 99.48 0.71 -1.73 16 46 H 0.41 -3.16 9.06 -74.06 -0.67 -3.83 16 47 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 48 H 0.09 -0.90 8.08 -2.39 -0.02 -0.92 16 49 H 0.07 -0.37 7.52 -2.39 -0.02 -0.39 16 50 H 0.16 -1.96 6.40 -2.91 -0.02 -1.98 16 51 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 52 H 0.08 -1.02 7.18 -2.39 -0.02 -1.04 16 53 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 54 H 0.08 -0.62 8.11 -2.39 -0.02 -0.64 16 Total: 0.00 -24.55 433.89 -0.06 -24.61 By element: Atomic # 1 Polarization: -23.26 SS G_CDS: -0.91 Total: -24.16 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.44 Total: 12.90 kcal Atomic # 7 Polarization: 2.81 SS G_CDS: -2.44 Total: 0.37 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -3.23 Total: -17.42 kcal Atomic # 14 Polarization: 1.63 SS G_CDS: 2.08 Total: 3.70 kcal Total: -24.55 -0.06 -24.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13287732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.354 kcal (2) G-P(sol) polarization free energy of solvation -24.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds