Wall clock time and date at job start Sun Mar 7 2021 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47423 * 2 1 4 4 C 1.34231 * 117.00446 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99585 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00242 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46959 * 299.99641 * 6 4 3 8 8 C 1.53005 * 109.47155 * 59.99333 * 6 4 3 9 9 C 1.52999 * 109.47159 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47317 * 300.00546 * 9 8 6 11 11 H 1.09002 * 109.47153 * 299.99641 * 10 9 8 12 12 C 1.53002 * 109.46817 * 179.97438 * 10 9 8 13 13 N 1.46494 * 109.47345 * 65.00126 * 12 10 9 14 14 C 1.34772 * 120.00365 * 179.97438 * 13 12 10 15 15 O 1.21559 * 119.99472 * 359.97438 * 14 13 12 16 16 C 1.47837 * 120.00342 * 179.97438 * 14 13 12 17 17 C 1.39513 * 120.55824 * 359.72115 * 16 14 13 18 18 N 1.31704 * 120.56663 * 179.72316 * 17 16 14 19 19 C 1.31920 * 121.87654 * 0.54879 * 18 17 16 20 20 C 1.38354 * 121.08455 * 359.73780 * 19 18 17 21 21 C 1.50699 * 120.35272 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47009 * 244.98119 * 21 20 19 23 23 Si 1.86300 * 109.47011 * 4.97834 * 21 20 19 24 24 C 1.38366 * 119.29968 * 359.97438 * 20 19 18 25 25 C 1.53000 * 109.47060 * 59.99960 * 10 9 8 26 26 C 1.52997 * 109.47078 * 179.97438 * 6 4 3 27 27 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46961 * 300.00137 * 1 2 3 29 29 H 1.08999 * 109.46966 * 60.00314 * 1 2 3 30 30 H 1.09000 * 109.47188 * 239.99396 * 2 1 3 31 31 H 1.08999 * 109.46966 * 119.99686 * 2 1 3 32 32 H 1.09000 * 109.47360 * 300.00319 * 8 6 4 33 33 H 1.09002 * 109.46935 * 60.00293 * 8 6 4 34 34 H 1.08996 * 109.46929 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46716 * 60.00455 * 9 8 6 36 36 H 1.09008 * 109.46873 * 184.99985 * 12 10 9 37 37 H 1.08997 * 109.47047 * 304.99674 * 12 10 9 38 38 H 0.97008 * 119.99803 * 359.97438 * 13 12 10 39 39 H 1.08005 * 119.72032 * 359.97438 * 17 16 14 40 40 H 1.08008 * 119.46018 * 179.72473 * 19 18 17 41 41 H 1.08996 * 109.47000 * 124.98027 * 21 20 19 42 42 H 0.96699 * 113.99393 * 179.97438 * 22 21 20 43 43 H 1.48493 * 110.00087 * 178.68154 * 23 21 20 44 44 H 1.48499 * 109.99967 * 300.00321 * 23 21 20 45 45 H 1.07994 * 120.85321 * 179.97438 * 24 20 19 46 46 H 1.08992 * 109.47399 * 59.99823 * 25 10 9 47 47 H 1.09004 * 109.46724 * 180.02562 * 25 10 9 48 48 H 1.08993 * 109.47194 * 59.99505 * 26 6 4 49 49 H 1.09002 * 109.46695 * 299.99519 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5846 3.4692 -0.8912 8 6 3.4496 3.6848 1.2480 9 6 4.0349 5.0984 1.2477 10 6 5.5628 5.0178 1.2475 11 1 5.8987 4.4857 2.1376 12 6 6.1480 6.4314 1.2466 13 7 5.7957 7.1067 2.4979 14 6 6.2068 8.3707 2.7206 15 8 6.8704 8.9503 1.8831 16 6 5.8508 9.0523 3.9832 17 6 5.0849 8.4001 4.9498 18 7 4.7722 9.0053 6.0770 19 6 5.1550 10.2414 6.3336 20 6 5.9119 10.9581 5.4239 21 6 6.3407 12.3691 5.7343 22 8 5.7206 13.2689 4.8133 23 14 5.8272 12.8064 7.4709 24 6 6.2719 10.3654 4.2266 25 6 6.0339 4.2704 -0.0017 26 6 5.4487 2.8572 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3611 3.7418 1.2483 33 1 3.7858 3.1529 2.1381 34 1 3.6988 5.6309 2.1373 35 1 3.6990 5.6304 0.3576 36 1 7.2329 6.3755 1.1569 37 1 5.7423 6.9920 0.4045 38 1 5.2665 6.6439 3.1664 39 1 4.7488 7.3889 4.7740 40 1 4.8727 10.7016 7.2691 41 1 7.4242 12.4474 5.6451 42 1 5.9519 14.1971 4.9544 43 1 6.2723 14.1842 7.8004 44 1 4.3519 12.7033 7.6054 45 1 6.8619 10.9019 3.4984 46 1 5.6980 4.8024 -0.8917 47 1 7.1224 4.2126 -0.0015 48 1 5.7847 2.3246 -0.8907 49 1 5.7845 2.3256 0.8893 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13287814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:28 Heat of formation + Delta-G solvation = -131.697641 kcal Electronic energy + Delta-G solvation = -30075.322964 eV Core-core repulsion = 25775.328022 eV Total energy + Delta-G solvation = -4299.994942 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.93739 -41.77293 -40.46530 -39.40018 -38.00826 -37.73139 -36.05435 -33.87986 -33.67937 -32.84424 -32.04824 -31.71024 -27.94641 -27.27546 -25.63375 -24.40850 -23.82882 -23.65026 -23.11304 -21.65506 -21.52004 -20.70055 -19.04750 -18.73267 -18.68760 -18.07202 -17.90530 -17.66958 -17.54816 -16.72335 -16.55632 -16.17705 -15.88791 -15.50681 -15.31608 -15.22897 -14.93669 -14.81321 -14.69496 -14.57490 -14.28955 -14.12715 -13.86333 -13.84985 -13.67689 -13.50798 -13.23779 -12.99224 -12.89093 -12.69649 -12.56412 -12.25294 -12.11010 -12.09188 -11.86922 -11.58112 -11.49114 -11.42257 -11.15572 -11.09414 -11.07719 -10.73711 -10.53036 -10.33876 -10.10706 -4.94718 -0.57037 -0.02227 1.10779 1.22114 1.58646 1.64731 1.66300 1.91558 1.99704 2.60381 3.08643 3.25891 3.42735 3.57594 3.59745 3.65334 3.67072 3.71030 3.77917 3.85666 3.95377 3.99017 4.03504 4.12976 4.16165 4.22246 4.28797 4.32119 4.40160 4.47025 4.48816 4.52174 4.66923 4.72695 4.81212 4.83784 4.85565 4.88315 4.94263 4.97836 5.09988 5.11958 5.13347 5.17935 5.23329 5.27623 5.32723 5.36386 5.44542 5.51853 6.36767 6.52386 6.64922 6.66697 7.04536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.093 4.093 11 H 0.091 0.909 12 C 0.125 3.875 13 N -0.706 5.706 14 C 0.564 3.436 15 O -0.576 6.576 16 C -0.197 4.197 17 C 0.146 3.854 18 N -0.493 5.493 19 C 0.126 3.874 20 C -0.138 4.138 21 C -0.086 4.086 22 O -0.559 6.559 23 Si 0.770 3.230 24 C -0.003 4.003 25 C -0.107 4.107 26 C -0.099 4.099 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.194 0.806 40 H 0.179 0.821 41 H 0.100 0.900 42 H 0.399 0.601 43 H -0.280 1.280 44 H -0.289 1.289 45 H 0.138 0.862 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -0.508 3.705 4.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.111 4.111 11 H 0.109 0.891 12 C 0.002 3.998 13 N -0.359 5.359 14 C 0.351 3.649 15 O -0.456 6.456 16 C -0.202 4.202 17 C -0.013 4.013 18 N -0.200 5.200 19 C -0.029 4.029 20 C -0.140 4.140 21 C -0.195 4.195 22 O -0.370 6.370 23 Si 0.673 3.327 24 C -0.030 4.030 25 C -0.145 4.145 26 C -0.137 4.137 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.254 0.746 39 H 0.211 0.789 40 H 0.196 0.804 41 H 0.118 0.882 42 H 0.250 0.750 43 H -0.207 1.207 44 H -0.216 1.216 45 H 0.156 0.844 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.170 -0.922 3.990 4.634 hybrid contribution 0.407 0.915 -1.484 1.790 sum -1.763 -0.007 2.506 3.064 Atomic orbital electron populations 1.21821 0.90678 1.04222 1.03761 1.23226 0.96923 0.79516 1.02328 1.86518 1.24411 1.33289 1.83490 1.24450 0.80467 0.93485 0.70900 1.90667 1.61162 1.44586 1.46866 1.21275 0.96651 0.88064 1.03602 0.85811 1.21502 1.01748 0.95836 0.95157 1.21628 0.93713 0.95673 1.03871 1.21406 0.96046 0.93468 1.00226 0.89113 1.21475 1.00214 0.92620 0.85501 1.45791 1.55121 1.13313 1.21638 1.18142 0.79016 0.82021 0.85703 1.90799 1.40790 1.66546 1.47489 1.21020 1.05276 0.96730 0.97199 1.23474 0.90425 1.00365 0.86997 1.67816 1.21237 1.10309 1.20672 1.23181 0.90647 0.90165 0.98935 1.20464 1.00911 0.96775 0.95823 1.25005 1.01406 0.87470 1.05593 1.86543 1.73117 1.21709 1.55613 0.94125 0.79448 0.83311 0.75766 1.21666 0.93315 0.92625 0.95365 1.21467 1.01189 0.93894 0.97905 1.21372 0.91506 0.97773 1.03045 0.88664 0.91117 0.91304 0.91673 0.91477 0.89934 0.91196 0.89842 0.90784 0.91728 0.91604 0.74648 0.78892 0.80407 0.88185 0.75013 1.20686 1.21589 0.84400 0.90496 0.90493 0.91811 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.56 10.29 71.98 0.74 1.30 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.10 10.12 -51.42 -0.52 -1.62 16 4 C 0.46 1.84 7.26 71.24 0.52 2.35 16 5 O -0.54 -5.83 15.73 21.96 0.35 -5.49 16 6 C -0.08 0.23 2.63 -11.54 -0.03 0.20 16 7 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 8 C -0.10 0.67 5.14 30.60 0.16 0.83 16 9 C -0.11 0.98 5.08 30.59 0.16 1.14 16 10 C -0.09 0.72 2.23 -10.79 -0.02 0.70 16 11 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 12 C 0.13 -0.47 5.06 86.38 0.44 -0.03 16 13 N -0.71 2.58 5.24 -465.99 -2.44 0.13 16 14 C 0.56 2.29 7.78 86.78 0.68 2.96 16 15 O -0.58 -7.43 16.42 -3.90 -0.06 -7.49 16 16 C -0.20 -0.45 5.89 -20.00 -0.12 -0.57 16 17 C 0.15 -0.24 10.71 85.02 0.91 0.67 16 18 N -0.49 -0.76 10.35 -194.75 -2.01 -2.78 16 19 C 0.13 0.06 9.84 84.71 0.83 0.89 16 20 C -0.14 -0.20 5.39 -19.81 -0.11 -0.31 16 21 C -0.09 0.17 2.81 71.24 0.20 0.37 16 22 O -0.56 -0.77 12.82 -148.98 -1.91 -2.68 16 23 Si 0.77 -3.52 29.88 68.60 2.05 -1.47 16 24 C 0.00 -0.01 9.38 22.73 0.21 0.20 16 25 C -0.11 0.66 5.20 30.58 0.16 0.82 16 26 C -0.10 0.26 4.49 30.58 0.14 0.40 16 27 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 31 H 0.07 0.09 8.13 -2.39 -0.02 0.08 16 32 H 0.08 -0.52 8.11 -2.39 -0.02 -0.54 16 33 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.08 -0.92 7.18 -2.39 -0.02 -0.94 16 35 H 0.07 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 37 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.41 -4.13 5.72 -92.70 -0.53 -4.66 16 39 H 0.19 -1.89 6.42 -2.91 -0.02 -1.91 16 40 H 0.18 -0.69 4.87 -2.91 -0.01 -0.70 16 41 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 42 H 0.40 -2.73 8.74 -74.06 -0.65 -3.38 16 43 H -0.28 0.11 7.11 99.48 0.71 0.81 16 44 H -0.29 -0.54 7.05 99.48 0.70 0.16 16 45 H 0.14 0.86 7.74 -2.91 -0.02 0.84 16 46 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 48 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 49 H 0.06 -0.03 8.10 -2.39 -0.02 -0.05 16 Total: 0.00 -25.37 398.84 0.58 -24.80 By element: Atomic # 1 Polarization: -15.66 SS G_CDS: -0.17 Total: -15.83 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.30 Total: 12.42 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -4.46 Total: -2.64 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -2.15 Total: -17.28 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal Total: -25.37 0.58 -24.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13287814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.900 kcal (2) G-P(sol) polarization free energy of solvation -25.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds