Wall clock time and date at job start Sun Mar 7 2021 07:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.47096 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00672 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99682 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47152 * 59.99843 * 6 4 3 8 8 C 1.53005 * 109.47304 * 179.97438 * 6 4 3 9 9 C 1.52997 * 109.47452 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46817 * 300.00239 * 9 8 6 11 11 H 1.08992 * 109.47063 * 299.99823 * 10 9 8 12 12 C 1.53001 * 109.46637 * 179.97438 * 10 9 8 13 13 N 1.46500 * 109.47094 * 65.00239 * 12 10 9 14 14 C 1.34777 * 120.00297 * 179.97438 * 13 12 10 15 15 O 1.21622 * 119.99659 * 0.02562 * 14 13 12 16 16 C 1.47374 * 120.00514 * 179.97438 * 14 13 12 17 17 C 1.36418 * 127.19509 * 179.70972 * 16 14 13 18 18 C 1.50699 * 125.80007 * 0.02562 * 17 16 14 19 19 O 1.33653 * 108.39380 * 179.89664 * 17 16 14 20 20 C 1.34210 * 110.90954 * 0.38806 * 19 17 16 21 21 C 1.50712 * 125.43511 * 179.76331 * 20 19 17 22 22 O 1.42903 * 109.46973 * 119.99968 * 21 20 19 23 23 Si 1.86295 * 109.47101 * 359.97438 * 21 20 19 24 24 C 1.34175 * 109.12988 * 359.76216 * 20 19 17 25 25 C 1.53000 * 109.47233 * 60.00194 * 10 9 8 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 10 9 27 27 H 1.08993 * 109.47027 * 300.00255 * 1 2 3 28 28 H 1.09000 * 109.46905 * 59.99996 * 1 2 3 29 29 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47476 * 240.00007 * 2 1 3 31 31 H 1.09000 * 109.46905 * 120.00003 * 2 1 3 32 32 H 1.09002 * 109.46935 * 59.99966 * 8 6 4 33 33 H 1.09001 * 109.46812 * 300.00308 * 8 6 4 34 34 H 1.08993 * 109.47194 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46695 * 59.99734 * 9 8 6 36 36 H 1.09008 * 109.46864 * 185.00001 * 12 10 9 37 37 H 1.09000 * 109.47679 * 305.00033 * 12 10 9 38 38 H 0.97004 * 120.00359 * 359.97438 * 13 12 10 39 39 H 1.09004 * 109.46897 * 90.00049 * 18 17 16 40 40 H 1.08995 * 109.46950 * 210.00075 * 18 17 16 41 41 H 1.08997 * 109.47161 * 330.00256 * 18 17 16 42 42 H 1.09002 * 109.47001 * 239.99850 * 21 20 19 43 43 H 0.96700 * 113.99940 * 299.99540 * 22 21 20 44 44 H 1.48496 * 110.00130 * 180.02562 * 23 21 20 45 45 H 1.48507 * 110.00090 * 301.31996 * 23 21 20 46 46 H 1.07996 * 127.02787 * 179.97438 * 24 20 19 47 47 H 1.09002 * 109.47398 * 59.99826 * 25 10 9 48 48 H 1.09001 * 109.47194 * 180.02562 * 25 10 9 49 49 H 1.08996 * 109.47853 * 180.02562 * 26 25 10 50 50 H 1.09002 * 109.47153 * 300.00319 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 0.8895 8 6 5.4487 2.8573 0.0014 9 6 6.0336 4.2711 0.0015 10 6 5.5631 5.0176 -1.2484 11 1 5.8998 4.4852 -2.1379 12 6 6.1475 6.4317 -1.2480 13 7 7.6057 6.3574 -1.3668 14 6 8.3386 7.4883 -1.3881 15 8 7.7893 8.5705 -1.3083 16 6 9.8057 7.4137 -1.5071 17 6 10.6838 8.4568 -1.5484 18 6 10.3211 9.9178 -1.4787 19 8 11.9208 7.9626 -1.6582 20 6 11.8987 6.6214 -1.7004 21 6 13.1083 5.7311 -1.8262 22 8 13.1852 4.8686 -0.6894 23 14 14.6450 6.7804 -1.9155 24 6 10.6281 6.1995 -1.6126 25 6 4.0352 5.0978 -1.2498 26 6 3.4504 3.6840 -1.2499 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7855 2.3245 -0.8879 33 1 5.7838 2.3258 0.8921 34 1 7.1220 4.2140 0.0030 35 1 5.6968 4.8035 0.8910 36 1 5.7424 6.9925 -2.0904 37 1 5.8839 6.9335 -0.3170 38 1 8.0440 5.4943 -1.4301 39 1 10.3156 10.2416 -0.4379 40 1 11.0535 10.5010 -2.0368 41 1 9.3318 10.0675 -1.9110 42 1 13.0252 5.1312 -2.7325 43 1 13.2610 5.3354 0.1541 44 1 15.8448 5.9143 -2.0403 45 1 14.5629 7.7038 -3.0756 46 1 10.2804 5.1771 -1.6186 47 1 3.6985 5.6302 -0.3602 48 1 3.7000 5.6292 -2.1405 49 1 2.3619 3.7410 -1.2513 50 1 3.7871 3.1516 -2.1394 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13308374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:31 Heat of formation + Delta-G solvation = -158.085384 kcal Electronic energy + Delta-G solvation = -31100.786226 eV Core-core repulsion = 26674.616884 eV Total energy + Delta-G solvation = -4426.169341 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.181 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.76629 -41.83932 -40.68132 -39.41471 -38.00576 -37.73523 -35.95942 -34.21957 -33.22709 -32.91049 -32.23381 -31.72516 -29.46784 -27.77491 -25.77363 -24.80365 -24.15113 -23.56966 -23.15698 -21.97862 -21.68471 -20.94489 -20.49670 -18.92333 -18.74041 -17.93482 -17.71370 -17.67191 -17.55625 -16.92415 -16.73108 -16.43105 -15.90094 -15.74095 -15.69316 -15.24223 -15.05726 -14.89237 -14.65428 -14.58875 -14.27087 -14.17408 -13.97257 -13.85115 -13.81307 -13.67061 -13.50409 -13.22211 -13.05282 -12.93630 -12.86816 -12.76967 -12.54989 -12.25745 -12.21793 -12.11938 -11.85259 -11.59064 -11.45384 -11.31083 -11.10704 -11.05441 -10.93888 -10.61823 -10.12990 -9.56719 -5.00820 0.23609 0.82938 1.09426 1.17736 1.40376 1.63642 1.76194 1.90998 2.18888 2.26202 3.22213 3.41426 3.47551 3.60636 3.63586 3.72597 3.78047 3.86489 3.94345 4.01295 4.02736 4.11308 4.11932 4.26802 4.30566 4.31519 4.38619 4.45487 4.46659 4.49558 4.61222 4.64204 4.68408 4.72279 4.78879 4.83717 4.86056 4.87666 4.93478 5.07718 5.10068 5.11593 5.13722 5.18368 5.21391 5.22162 5.32169 5.39418 5.43917 5.51120 5.89772 6.48173 6.62447 6.65388 7.16328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.077 4.077 7 H 0.126 0.874 8 C -0.100 4.100 9 C -0.108 4.108 10 C -0.093 4.093 11 H 0.083 0.917 12 C 0.127 3.873 13 N -0.712 5.712 14 C 0.587 3.413 15 O -0.575 6.575 16 C -0.269 4.269 17 C 0.084 3.916 18 C -0.084 4.084 19 O -0.172 6.172 20 C -0.060 4.060 21 C -0.024 4.024 22 O -0.539 6.539 23 Si 0.776 3.224 24 C -0.149 4.149 25 C -0.106 4.106 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.411 0.589 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.400 0.600 44 H -0.280 1.280 45 H -0.295 1.295 46 H 0.175 0.825 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 0.494 1.717 2.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.095 4.095 7 H 0.144 0.856 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.112 4.112 11 H 0.102 0.898 12 C 0.004 3.996 13 N -0.363 5.363 14 C 0.376 3.624 15 O -0.457 6.457 16 C -0.273 4.273 17 C 0.031 3.969 18 C -0.140 4.140 19 O -0.069 6.069 20 C -0.108 4.108 21 C -0.134 4.134 22 O -0.347 6.347 23 Si 0.681 3.319 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.155 0.845 43 H 0.251 0.749 44 H -0.206 1.206 45 H -0.222 1.222 46 H 0.193 0.807 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.543 0.836 0.846 1.307 hybrid contribution -0.402 -1.254 -0.392 1.374 sum -0.945 -0.419 0.454 1.129 Atomic orbital electron populations 1.21820 0.90646 1.04234 1.03776 1.23233 0.96955 0.79496 1.02324 1.86521 1.24387 1.33311 1.83482 1.24432 0.80490 0.93462 0.70910 1.90663 1.61143 1.44566 1.46858 1.21268 0.96692 0.88096 1.03482 0.85600 1.21394 0.91535 0.97839 1.02978 1.21587 1.00896 0.93972 0.98132 1.21395 0.96420 0.93831 0.99506 0.89831 1.21439 0.78441 0.97612 1.02095 1.45741 1.07905 1.08605 1.74082 1.17343 0.85459 0.84077 0.75528 1.90760 1.73381 1.29185 1.52338 1.21237 0.93885 0.94059 1.18161 1.23243 0.80594 0.97328 0.95742 1.20706 1.03657 0.84347 1.05313 1.83670 1.30303 1.21783 1.71135 1.22904 0.98449 0.80545 1.08921 1.24444 1.00445 0.95365 0.93160 1.86536 1.95945 1.34960 1.17297 0.93273 0.73598 0.77605 0.87413 1.22777 0.91133 0.99012 1.03859 1.21481 0.93054 0.95819 1.04037 1.21480 1.01816 0.95769 0.95089 0.91220 0.91178 0.88642 0.91564 0.91583 0.91799 0.91726 0.90714 0.90667 0.91822 0.91531 0.75238 0.87922 0.88500 0.88603 0.84494 0.74925 1.20625 1.22243 0.80736 0.90146 0.90135 0.89772 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.26 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.27 10.12 -51.41 -0.52 -1.79 16 4 C 0.46 2.07 7.26 71.24 0.52 2.58 16 5 O -0.54 -6.00 15.73 21.98 0.35 -5.66 16 6 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.13 -0.67 8.14 -2.39 -0.02 -0.69 16 8 C -0.10 0.23 4.49 30.60 0.14 0.36 16 9 C -0.11 0.63 5.08 30.59 0.16 0.78 16 10 C -0.09 0.57 2.23 -10.79 -0.02 0.54 16 11 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 12 C 0.13 -0.28 5.06 86.38 0.44 0.15 16 13 N -0.71 0.46 5.28 -466.40 -2.46 -2.00 16 14 C 0.59 3.34 7.81 86.65 0.68 4.02 16 15 O -0.57 -6.84 14.85 -4.10 -0.06 -6.90 16 16 C -0.27 -1.05 6.31 -18.99 -0.12 -1.17 16 17 C 0.08 0.29 7.37 25.26 0.19 0.48 16 18 C -0.08 -0.01 9.89 71.24 0.70 0.69 16 19 O -0.17 -0.37 8.89 4.51 0.04 -0.33 16 20 C -0.06 -0.01 6.20 24.76 0.15 0.15 16 21 C -0.02 0.07 2.97 71.24 0.21 0.28 16 22 O -0.54 1.81 12.86 -148.98 -1.92 -0.11 16 23 Si 0.78 -1.93 32.09 68.60 2.20 0.27 16 24 C -0.15 -0.02 10.46 23.65 0.25 0.23 16 25 C -0.11 0.72 5.20 30.59 0.16 0.88 16 26 C -0.10 0.50 5.14 30.59 0.16 0.65 16 27 H 0.07 -0.25 8.14 -2.39 -0.02 -0.26 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.07 0.12 8.13 -2.39 -0.02 0.11 16 31 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 32 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 33 H 0.06 0.00 8.10 -2.39 -0.02 -0.01 16 34 H 0.07 -0.48 7.18 -2.39 -0.02 -0.50 16 35 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.41 -2.02 6.83 -92.71 -0.63 -2.66 16 39 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.10 0.34 6.49 -2.39 -0.02 0.33 16 42 H 0.14 -0.52 7.96 -2.39 -0.02 -0.53 16 43 H 0.40 -4.32 8.70 -74.06 -0.64 -4.97 16 44 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 45 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16 46 H 0.18 -0.75 7.74 -2.91 -0.02 -0.77 16 47 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 49 H 0.08 -0.42 8.11 -2.39 -0.02 -0.44 16 50 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -21.20 409.94 2.09 -19.11 By element: Atomic # 1 Polarization: -14.86 SS G_CDS: -0.29 Total: -15.14 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 4.76 Total: 12.55 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -2.46 Total: -2.00 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -2.11 Total: -14.78 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.20 Total: 0.27 kcal Total: -21.20 2.09 -19.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13308374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.978 kcal (2) G-P(sol) polarization free energy of solvation -21.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds