Wall clock time and date at job start Sun Mar 7 2021 07:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99763 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47161 * 60.00117 * 6 4 3 8 8 C 1.53002 * 109.46925 * 180.02562 * 6 4 3 9 9 C 1.52996 * 109.47340 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.46543 * 299.99607 * 9 8 6 11 11 H 1.09000 * 109.47360 * 299.99881 * 10 9 8 12 12 C 1.53006 * 109.47055 * 179.97438 * 10 9 8 13 13 N 1.46496 * 109.47070 * 175.00071 * 12 10 9 14 14 C 1.34775 * 119.99828 * 179.97438 * 13 12 10 15 15 O 1.21593 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.47532 * 120.00056 * 179.97438 * 14 13 12 17 17 C 1.40144 * 120.19202 * 179.72327 * 16 14 13 18 18 O 1.35650 * 120.14771 * 0.02562 * 17 16 14 19 19 C 1.38710 * 119.69979 * 179.79345 * 17 16 14 20 20 C 1.38054 * 120.08209 * 0.49219 * 19 17 16 21 21 C 1.50704 * 119.80619 * 179.76441 * 20 19 17 22 22 O 1.42899 * 109.46847 * 64.97134 * 21 20 19 23 23 Si 1.86295 * 109.47279 * 184.97528 * 21 20 19 24 24 C 1.38549 * 120.39046 * 359.73737 * 20 19 17 25 25 C 1.37781 * 120.30211 * 0.02736 * 24 20 19 26 26 C 1.53002 * 109.46982 * 60.00174 * 10 9 8 27 27 C 1.52996 * 109.47343 * 299.99735 * 26 10 9 28 28 H 1.08998 * 109.47020 * 300.00157 * 1 2 3 29 29 H 1.08997 * 109.46822 * 59.99725 * 1 2 3 30 30 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47442 * 239.99650 * 2 1 3 32 32 H 1.09003 * 109.46945 * 119.99550 * 2 1 3 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 6 4 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 6 4 35 35 H 1.09000 * 109.47196 * 59.99588 * 9 8 6 36 36 H 1.09001 * 109.47364 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.46904 * 295.00649 * 12 10 9 38 38 H 1.09004 * 109.46568 * 54.99961 * 12 10 9 39 39 H 0.96994 * 120.00061 * 0.02562 * 13 12 10 40 40 H 0.96702 * 113.99761 * 89.99992 * 18 17 16 41 41 H 1.07997 * 119.95994 * 180.25395 * 19 17 16 42 42 H 1.08996 * 109.46565 * 304.97563 * 21 20 19 43 43 H 0.96703 * 114.00217 * 60.00643 * 22 21 20 44 44 H 1.48498 * 109.99802 * 180.02562 * 23 21 20 45 45 H 1.48509 * 110.00029 * 301.31716 * 23 21 20 46 46 H 1.08005 * 119.84911 * 180.02562 * 24 20 19 47 47 H 1.08007 * 120.04543 * 180.02562 * 25 24 20 48 48 H 1.09004 * 109.47059 * 60.00133 * 26 10 9 49 49 H 1.09004 * 109.46930 * 179.97438 * 26 10 9 50 50 H 1.09000 * 109.46870 * 300.00214 * 27 26 10 51 51 H 1.08992 * 109.47554 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 1 3.5845 3.4693 0.8912 8 6 5.4487 2.8573 0.0010 9 6 6.0335 4.2711 0.0023 10 6 5.5620 5.0191 -1.2464 11 1 5.8979 4.4877 -2.1368 12 6 6.1463 6.4332 -1.2449 13 7 5.7935 7.1086 -2.4961 14 6 6.2030 8.3734 -2.7178 15 8 6.8655 8.9537 -1.8794 16 6 5.8483 9.0534 -3.9780 17 6 6.2670 10.3705 -4.2102 18 8 7.0012 11.0265 -3.2771 19 6 5.9314 10.9986 -5.4006 20 6 5.1796 10.3315 -6.3469 21 6 4.8140 11.0218 -7.6358 22 8 6.0000 11.2856 -8.3878 23 14 3.6806 9.9253 -8.6277 24 6 4.7596 9.0310 -6.1191 25 6 5.0880 8.3902 -4.9444 26 6 4.0340 5.0992 -1.2463 27 6 3.4492 3.6854 -1.2474 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 5.7847 2.3248 0.8908 34 1 5.7846 2.3255 -0.8892 35 1 5.6976 4.8025 0.8927 36 1 7.1221 4.2141 0.0018 37 1 5.7401 6.9932 -0.4026 38 1 7.2312 6.3778 -1.1551 39 1 5.2647 6.6458 -3.1647 40 1 7.9564 10.9151 -3.3786 41 1 6.2553 12.0121 -5.5856 42 1 4.3080 11.9613 -7.4138 43 1 6.5023 10.4929 -8.6213 44 1 3.3133 10.5944 -9.9014 45 1 4.3471 8.6284 -8.9096 46 1 4.1721 8.5172 -6.8657 47 1 4.7588 7.3762 -4.7713 48 1 3.6981 5.6306 -0.3558 49 1 3.6981 5.6324 -2.1356 50 1 3.7851 3.1540 -2.1379 51 1 2.3608 3.7424 -1.2478 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13422076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:39 Heat of formation + Delta-G solvation = -184.550746 kcal Electronic energy + Delta-G solvation = -32474.312700 eV Core-core repulsion = 27918.769594 eV Total energy + Delta-G solvation = -4555.543106 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.84318 -41.60507 -40.19743 -39.32666 -38.46851 -37.70640 -37.21627 -35.87053 -33.47139 -32.72688 -31.95215 -31.68282 -31.08794 -28.19554 -26.87123 -24.70462 -23.92214 -23.73215 -23.51548 -22.91878 -21.60020 -21.53939 -20.71469 -19.49035 -18.72437 -18.69736 -18.27884 -17.66239 -17.56107 -17.35281 -16.70184 -16.47018 -16.25753 -16.10339 -15.85079 -15.78283 -15.31352 -15.16311 -15.04099 -14.88028 -14.71184 -14.61866 -14.33081 -13.86097 -13.73943 -13.67841 -13.50900 -13.23247 -13.17022 -12.97890 -12.94885 -12.86528 -12.54957 -12.36097 -12.22811 -12.13554 -12.08673 -11.84856 -11.58349 -11.56632 -11.42774 -11.19880 -11.09184 -10.91579 -10.61819 -10.24304 -9.98119 -9.76070 -4.88425 -0.39470 0.16678 1.11911 1.29470 1.62361 1.65642 1.73926 2.00516 2.10280 2.59775 3.12663 3.42023 3.43994 3.50118 3.61093 3.67829 3.72423 3.78898 3.89044 3.96540 4.00157 4.04750 4.09249 4.18135 4.29408 4.29611 4.33160 4.41034 4.43583 4.48218 4.52850 4.65205 4.67883 4.75404 4.77901 4.83593 4.86902 4.89800 4.98962 5.04887 5.10604 5.12536 5.14055 5.17441 5.19983 5.24577 5.26150 5.33578 5.39640 5.45901 5.53536 5.61634 6.47315 6.50099 6.67823 6.71861 7.19682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.107 4.107 10 C -0.092 4.092 11 H 0.089 0.911 12 C 0.127 3.873 13 N -0.710 5.710 14 C 0.553 3.447 15 O -0.567 6.567 16 C -0.179 4.179 17 C 0.151 3.849 18 O -0.499 6.499 19 C -0.140 4.140 20 C -0.070 4.070 21 C -0.094 4.094 22 O -0.548 6.548 23 Si 0.780 3.220 24 C -0.133 4.133 25 C -0.053 4.053 26 C -0.110 4.110 27 C -0.104 4.104 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.414 0.586 40 H 0.406 0.594 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.388 0.612 44 H -0.308 1.308 45 H -0.268 1.268 46 H 0.163 0.837 47 H 0.169 0.831 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -3.634 -2.985 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.137 4.137 9 C -0.145 4.145 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.003 3.997 13 N -0.364 5.364 14 C 0.341 3.659 15 O -0.447 6.447 16 C -0.182 4.182 17 C 0.105 3.895 18 O -0.312 6.312 19 C -0.159 4.159 20 C -0.071 4.071 21 C -0.202 4.202 22 O -0.356 6.356 23 Si 0.684 3.316 24 C -0.150 4.150 25 C -0.071 4.071 26 C -0.148 4.148 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.238 0.762 44 H -0.237 1.237 45 H -0.194 1.194 46 H 0.180 0.820 47 H 0.186 0.814 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.039 -3.217 -2.805 7.395 hybrid contribution 1.840 -0.488 -0.361 1.938 sum -4.199 -3.705 -3.167 6.433 Atomic orbital electron populations 1.21818 0.90641 1.04205 1.03805 1.23227 0.96946 0.79524 1.02297 1.86518 1.24360 1.33260 1.83482 1.24441 0.80482 0.93457 0.70893 1.90667 1.61178 1.44601 1.46884 1.21274 0.96541 0.88100 1.03710 0.85848 1.21376 0.91628 0.97671 1.02990 1.21478 1.01077 0.93968 0.98000 1.21396 0.96219 0.93394 1.00038 0.89226 1.21398 0.99849 0.92621 0.85788 1.45790 1.55678 1.13469 1.21450 1.18310 0.79373 0.81898 0.86273 1.90817 1.40342 1.66200 1.47304 1.20470 1.06352 0.94844 0.96578 1.18770 0.93975 0.89039 0.87728 1.84716 1.23170 1.71785 1.51487 1.21347 1.01067 1.01471 0.91996 1.20476 0.95971 0.94672 0.95988 1.25470 0.93513 1.08765 0.92474 1.86607 1.37765 1.37401 1.73869 0.93914 0.83995 0.75035 0.78646 1.21277 1.01143 0.93970 0.98586 1.21489 0.93675 1.00628 0.91309 1.21621 0.93533 0.95688 1.03931 1.21498 1.01832 0.95747 0.95068 0.91318 0.91013 0.88715 0.91464 0.91760 0.91906 0.91676 0.90598 0.90709 0.92036 0.92249 0.74757 0.73408 0.84902 0.85796 0.76245 1.23693 1.19396 0.82043 0.81355 0.90903 0.89616 0.91167 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.66 10.29 71.98 0.74 1.40 16 2 C 0.05 0.02 6.19 71.98 0.45 0.46 16 3 O -0.36 -0.83 10.12 -51.41 -0.52 -1.35 16 4 C 0.46 1.56 7.26 71.24 0.52 2.08 16 5 O -0.54 -5.57 15.73 21.98 0.35 -5.22 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 7 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 8 C -0.10 0.27 4.49 30.59 0.14 0.41 16 9 C -0.11 0.65 5.20 30.59 0.16 0.81 16 10 C -0.09 0.72 2.23 -10.79 -0.02 0.70 16 11 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 12 C 0.13 -0.42 5.06 86.38 0.44 0.02 16 13 N -0.71 2.59 5.23 -466.26 -2.44 0.15 16 14 C 0.55 2.38 7.76 86.69 0.67 3.06 16 15 O -0.57 -7.63 15.16 16.91 0.26 -7.38 16 16 C -0.18 -0.22 5.89 -20.01 -0.12 -0.34 16 17 C 0.15 0.66 6.72 22.85 0.15 0.81 16 18 O -0.50 -3.81 11.58 -68.73 -0.80 -4.60 16 19 C -0.14 -0.20 9.60 22.34 0.21 0.01 16 20 C -0.07 0.21 5.36 -19.83 -0.11 0.10 16 21 C -0.09 0.33 2.79 71.24 0.20 0.53 16 22 O -0.55 -0.06 12.83 -148.98 -1.91 -1.97 16 23 Si 0.78 -4.86 29.86 68.60 2.05 -2.81 16 24 C -0.13 0.90 8.64 22.24 0.19 1.09 16 25 C -0.05 0.34 9.53 22.52 0.21 0.55 16 26 C -0.11 1.04 5.08 30.59 0.16 1.20 16 27 C -0.10 0.76 5.14 30.59 0.16 0.92 16 28 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.07 -0.36 8.14 -2.39 -0.02 -0.37 16 30 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 32 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 33 H 0.06 0.00 8.10 -2.38 -0.02 -0.02 16 34 H 0.06 -0.05 8.10 -2.39 -0.02 -0.07 16 35 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 39 H 0.41 -4.33 5.68 -92.71 -0.53 -4.86 16 40 H 0.41 0.37 9.06 -74.06 -0.67 -0.30 16 41 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.12 -0.51 7.96 -2.39 -0.02 -0.53 16 43 H 0.39 -2.38 8.70 -74.06 -0.64 -3.02 16 44 H -0.31 -0.88 7.11 99.48 0.71 -0.17 16 45 H -0.27 1.18 7.00 99.48 0.70 1.88 16 46 H 0.16 -1.95 4.81 -2.91 -0.01 -1.96 16 47 H 0.17 -2.39 6.41 -2.91 -0.02 -2.41 16 48 H 0.07 -0.62 8.14 -2.39 -0.02 -0.64 16 49 H 0.09 -1.04 7.18 -2.38 -0.02 -1.06 16 50 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 51 H 0.08 -0.63 8.11 -2.39 -0.02 -0.65 16 Total: 0.00 -27.37 412.49 0.26 -27.11 By element: Atomic # 1 Polarization: -17.15 SS G_CDS: -0.84 Total: -17.99 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 4.12 Total: 14.05 kcal Atomic # 7 Polarization: 2.59 SS G_CDS: -2.44 Total: 0.15 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -2.63 Total: -20.52 kcal Atomic # 14 Polarization: -4.86 SS G_CDS: 2.05 Total: -2.81 kcal Total: -27.37 0.26 -27.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13422076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.439 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds