Wall clock time and date at job start Sun Mar 7 2021 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 8 8 C 1.53000 * 109.47495 * 59.99416 * 6 4 3 9 9 C 1.52997 * 109.47105 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47255 * 300.00140 * 9 8 6 11 11 H 1.08997 * 109.47192 * 299.99970 * 10 9 8 12 12 C 1.53007 * 109.46862 * 180.02562 * 10 9 8 13 13 N 1.46490 * 109.47322 * 65.00169 * 12 10 9 14 14 C 1.34779 * 120.00274 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.47531 * 120.00356 * 179.97438 * 14 13 12 17 17 C 1.40134 * 120.18966 * 179.71959 * 16 14 13 18 18 O 1.35652 * 120.15572 * 0.02562 * 17 16 14 19 19 C 1.38718 * 119.69843 * 179.79464 * 17 16 14 20 20 C 1.50697 * 119.96073 * 180.21349 * 19 17 16 21 21 O 1.42899 * 109.47172 * 75.27113 * 20 19 17 22 22 Si 1.86299 * 109.47286 * 195.27765 * 20 19 17 23 23 C 1.38056 * 120.08111 * 0.48747 * 19 17 16 24 24 C 1.38546 * 120.39300 * 359.74646 * 23 19 17 25 25 C 1.50697 * 119.85335 * 179.97438 * 24 23 19 26 26 C 1.37791 * 120.30054 * 0.02562 * 24 23 19 27 27 C 1.52997 * 109.47342 * 60.00235 * 10 9 8 28 28 C 1.52997 * 109.47080 * 300.00267 * 27 10 9 29 29 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 30 30 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 34 34 H 1.08998 * 109.47013 * 300.00782 * 8 6 4 35 35 H 1.09005 * 109.46409 * 60.00337 * 8 6 4 36 36 H 1.09008 * 109.46827 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.46996 * 60.00230 * 9 8 6 38 38 H 1.09001 * 109.46471 * 185.00441 * 12 10 9 39 39 H 1.08999 * 109.47028 * 304.99810 * 12 10 9 40 40 H 0.97005 * 120.00103 * 359.97438 * 13 12 10 41 41 H 0.96701 * 113.99955 * 89.99399 * 18 17 16 42 42 H 1.09003 * 109.46892 * 315.28005 * 20 19 17 43 43 H 0.96706 * 113.99750 * 179.97438 * 21 20 19 44 44 H 1.48503 * 110.00082 * 178.67682 * 22 20 19 45 45 H 1.48503 * 109.99638 * 299.99808 * 22 20 19 46 46 H 1.08001 * 119.80206 * 179.76847 * 23 19 17 47 47 H 1.09000 * 109.46953 * 270.02267 * 25 24 23 48 48 H 1.09005 * 109.46960 * 30.01854 * 25 24 23 49 49 H 1.08996 * 109.47538 * 150.01857 * 25 24 23 50 50 H 1.08000 * 120.04856 * 180.02562 * 26 24 23 51 51 H 1.08995 * 109.47425 * 180.02562 * 27 10 9 52 52 H 1.09002 * 109.46856 * 59.99396 * 27 10 9 53 53 H 1.09005 * 109.47056 * 299.99290 * 28 27 10 54 54 H 1.09000 * 109.47303 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.5850 3.4699 -0.8889 8 6 3.4484 3.6843 1.2503 9 6 4.0327 5.0983 1.2506 10 6 5.5606 5.0188 1.2508 11 1 5.8966 4.4867 2.1408 12 6 6.1449 6.4329 1.2517 13 7 5.7916 7.1065 2.5037 14 6 6.2018 8.3706 2.7279 15 8 6.8654 8.9518 1.8911 16 6 5.8456 9.0491 3.9885 17 6 6.2749 10.3614 4.2282 18 8 7.0200 11.0146 3.3017 19 6 5.9305 10.9912 5.4152 20 6 6.3850 12.4040 5.6770 21 8 5.5984 13.3091 4.8997 22 14 6.1786 12.7976 7.4862 23 6 5.1767 10.3234 6.3595 24 6 4.7544 9.0242 6.1284 25 6 3.9326 8.3064 7.1678 26 6 5.0834 8.3850 4.9529 27 6 6.0328 4.2722 0.0017 28 6 5.4485 2.8581 0.0013 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.3599 3.7412 1.2499 35 1 3.7841 3.1518 2.1403 36 1 3.6967 5.6301 2.1408 37 1 3.6968 5.6303 0.3606 38 1 7.2298 6.3777 1.1623 39 1 5.7390 6.9942 0.4101 40 1 5.2625 6.6426 3.1715 41 1 6.4984 11.5136 2.6582 42 1 7.4345 12.5051 5.4005 43 1 5.8362 14.2389 5.0188 44 1 6.6531 14.1772 7.7632 45 1 4.7518 12.6633 7.8755 46 1 4.9143 10.8167 7.2837 47 1 4.5950 7.7769 7.8526 48 1 3.3381 9.0308 7.7247 49 1 3.2703 7.5927 6.6780 50 1 4.7518 7.3724 4.7768 51 1 7.1212 4.2151 0.0021 52 1 5.6967 4.8042 -0.8883 53 1 5.7845 2.3260 0.8913 54 1 5.7852 2.3260 -0.8884 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13422088.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:43 Heat of formation + Delta-G solvation = -187.724067 kcal Electronic energy + Delta-G solvation = -34859.998940 eV Core-core repulsion = 30148.780610 eV Total energy + Delta-G solvation = -4711.218331 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.86722 -41.68230 -40.27014 -39.32571 -38.05658 -37.77579 -37.67619 -35.89758 -33.58213 -33.12090 -32.74000 -31.95265 -31.69628 -27.85498 -27.46962 -26.73752 -25.24985 -24.24106 -23.74411 -23.10241 -21.86371 -21.57503 -21.41053 -20.67565 -19.53695 -18.72985 -18.64267 -18.27940 -17.73748 -17.66280 -17.54744 -16.83545 -16.47485 -16.35260 -16.04965 -15.79347 -15.37604 -15.28116 -15.20898 -14.96267 -14.83338 -14.66142 -14.61637 -14.41643 -14.08665 -13.88281 -13.76762 -13.68050 -13.50520 -13.24347 -13.18491 -13.00805 -12.95457 -12.88326 -12.56328 -12.51334 -12.43008 -12.24019 -12.10465 -11.87359 -11.85763 -11.73779 -11.58003 -11.44534 -11.20897 -11.10939 -10.89590 -10.48628 -10.27235 -9.99198 -9.49209 -4.95441 -0.33563 0.07291 1.10614 1.24331 1.56110 1.64389 1.72325 1.87820 2.09184 2.54108 3.18269 3.28917 3.42418 3.56241 3.60831 3.66736 3.67599 3.83005 3.86207 3.95487 3.98385 4.03704 4.10963 4.14307 4.19038 4.27370 4.31621 4.35091 4.39568 4.46063 4.51035 4.53219 4.61677 4.65979 4.73725 4.81209 4.83124 4.85872 4.88653 4.91874 4.97134 4.99329 5.08962 5.11284 5.12770 5.17614 5.20377 5.22342 5.24851 5.31896 5.37754 5.42765 5.44551 5.51460 5.68061 6.47333 6.52277 6.66629 6.68269 7.17399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.092 4.092 11 H 0.089 0.911 12 C 0.127 3.873 13 N -0.711 5.711 14 C 0.555 3.445 15 O -0.566 6.566 16 C -0.179 4.179 17 C 0.161 3.839 18 O -0.491 6.491 19 C -0.118 4.118 20 C -0.088 4.088 21 O -0.556 6.556 22 Si 0.774 3.226 23 C -0.081 4.081 24 C -0.094 4.094 25 C -0.117 4.117 26 C -0.060 4.060 27 C -0.107 4.107 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.401 0.599 42 H 0.078 0.922 43 H 0.395 0.605 44 H -0.286 1.286 45 H -0.279 1.279 46 H 0.149 0.851 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.163 0.837 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.064 0.936 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 -1.953 5.400 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.141 4.141 9 C -0.147 4.147 10 C -0.110 4.110 11 H 0.107 0.893 12 C 0.004 3.996 13 N -0.364 5.364 14 C 0.343 3.657 15 O -0.445 6.445 16 C -0.183 4.183 17 C 0.114 3.886 18 O -0.303 6.303 19 C -0.119 4.119 20 C -0.195 4.195 21 O -0.366 6.366 22 Si 0.677 3.323 23 C -0.099 4.099 24 C -0.094 4.094 25 C -0.173 4.173 26 C -0.079 4.079 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.251 0.749 41 H 0.260 0.740 42 H 0.096 0.904 43 H 0.245 0.755 44 H -0.213 1.213 45 H -0.205 1.205 46 H 0.166 0.834 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.180 0.820 51 H 0.093 0.907 52 H 0.095 0.905 53 H 0.083 0.917 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.665 -2.164 5.458 7.499 hybrid contribution -0.341 0.842 -1.268 1.560 sum -5.006 -1.323 4.189 6.661 Atomic orbital electron populations 1.21820 0.90646 1.04224 1.03778 1.23232 0.96941 0.79499 1.02329 1.86517 1.24356 1.33297 1.83484 1.24422 0.80487 0.93434 0.70907 1.90670 1.61163 1.44586 1.46865 1.21267 0.96565 0.88133 1.03634 0.85823 1.21497 1.01787 0.95714 0.95141 1.21611 0.93558 0.95738 1.03810 1.21392 0.96185 0.93374 1.00098 0.89309 1.21405 0.99816 0.92716 0.85704 1.45791 1.55628 1.13554 1.21454 1.18265 0.79202 0.82078 0.86153 1.90808 1.39940 1.66311 1.47485 1.20422 1.04942 0.96167 0.96770 1.18525 0.90336 0.90113 0.89600 1.84642 1.34674 1.67542 1.43426 1.19743 1.01038 0.95504 0.95587 1.25025 0.97190 0.87986 1.09331 1.86500 1.61696 1.20971 1.67449 0.93910 0.81069 0.82754 0.74562 1.21361 0.94749 0.95046 0.98759 1.20113 0.99067 0.93869 0.96354 1.20919 0.99071 1.00612 0.96694 1.21431 0.94448 1.00364 0.91637 1.21473 1.01102 0.94000 0.97914 1.21375 0.91601 0.97631 1.03049 0.91064 0.91316 0.88673 0.91708 0.91450 0.89782 0.91166 0.89873 0.90840 0.92385 0.91871 0.74875 0.74031 0.90356 0.75485 1.21316 1.20541 0.83373 0.89166 0.90755 0.89601 0.81957 0.90697 0.90534 0.91673 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.01 10.12 -51.35 -0.52 -1.53 16 4 C 0.46 1.81 7.26 71.23 0.52 2.33 16 5 O -0.54 -5.82 15.73 21.94 0.35 -5.48 16 6 C -0.08 0.22 2.63 -11.54 -0.03 0.19 16 7 H 0.12 -0.67 8.14 -2.38 -0.02 -0.69 16 8 C -0.10 0.67 5.14 30.59 0.16 0.82 16 9 C -0.11 0.91 5.08 30.59 0.16 1.06 16 10 C -0.09 0.61 2.22 -10.79 -0.02 0.58 16 11 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 12 C 0.13 -0.22 5.07 86.38 0.44 0.22 16 13 N -0.71 1.05 5.23 -466.28 -2.44 -1.39 16 14 C 0.55 3.76 7.76 86.69 0.67 4.43 16 15 O -0.57 -8.80 15.16 16.92 0.26 -8.55 16 16 C -0.18 -0.79 5.89 -20.01 -0.12 -0.91 16 17 C 0.16 1.20 6.69 22.85 0.15 1.36 16 18 O -0.49 -5.12 10.90 -68.76 -0.75 -5.87 16 19 C -0.12 -0.47 5.30 -19.79 -0.10 -0.57 16 20 C -0.09 -0.16 2.37 71.24 0.17 0.01 16 21 O -0.56 -1.80 12.86 -148.98 -1.92 -3.72 16 22 Si 0.77 -1.74 30.19 68.60 2.07 0.33 16 23 C -0.08 0.02 8.30 22.30 0.19 0.21 16 24 C -0.09 0.30 5.87 -19.90 -0.12 0.19 16 25 C -0.12 1.04 10.00 71.23 0.71 1.75 16 26 C -0.06 0.17 9.18 22.52 0.21 0.38 16 27 C -0.11 0.55 5.21 30.59 0.16 0.71 16 28 C -0.10 0.21 4.49 30.59 0.14 0.34 16 29 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.06 0.10 8.13 -2.39 -0.02 0.09 16 33 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 34 H 0.08 -0.56 8.11 -2.39 -0.02 -0.58 16 35 H 0.07 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H 0.08 -0.88 7.18 -2.38 -0.02 -0.90 16 37 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.41 -3.30 5.68 -92.70 -0.53 -3.82 16 41 H 0.40 2.50 9.06 -74.06 -0.67 1.83 16 42 H 0.08 0.14 7.82 -2.39 -0.02 0.13 16 43 H 0.39 -1.74 8.74 -74.05 -0.65 -2.39 16 44 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 45 H -0.28 -0.52 6.74 99.48 0.67 0.15 16 46 H 0.15 -0.53 4.87 -2.91 -0.01 -0.54 16 47 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H 0.07 -0.66 8.08 -2.38 -0.02 -0.68 16 49 H 0.09 -0.98 8.08 -2.39 -0.02 -0.99 16 50 H 0.16 -1.67 6.40 -2.91 -0.02 -1.69 16 51 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 52 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 53 H 0.06 0.00 8.10 -2.38 -0.02 -0.02 16 54 H 0.06 0.03 8.10 -2.39 -0.02 0.01 16 Total: 0.00 -26.58 433.19 0.60 -25.98 By element: Atomic # 1 Polarization: -13.78 SS G_CDS: -0.90 Total: -14.69 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 4.46 Total: 14.91 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -2.44 Total: -1.39 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -2.58 Total: -25.14 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.07 Total: 0.33 kcal Total: -26.58 0.60 -25.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13422088.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.741 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds