Wall clock time and date at job start Sun Mar 7 2021 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45192 * 109.47424 * 2 1 4 4 C 1.34231 * 117.00457 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99569 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00613 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46857 * 60.00003 * 6 4 3 8 8 C 1.52996 * 109.47373 * 180.02562 * 6 4 3 9 9 C 1.53008 * 109.47175 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46875 * 300.00038 * 9 8 6 11 11 H 1.09000 * 109.47187 * 299.99816 * 10 9 8 12 12 C 1.52998 * 109.46896 * 179.97438 * 10 9 8 13 13 N 1.46506 * 109.47153 * 174.99532 * 12 10 9 14 14 C 1.34778 * 120.00085 * 179.97438 * 13 12 10 15 15 O 1.21616 * 119.99747 * 0.02562 * 14 13 12 16 16 C 1.47370 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.36423 * 127.19295 * 359.97438 * 16 14 13 18 18 O 1.33652 * 108.39919 * 180.30306 * 17 16 14 19 19 C 1.34218 * 110.90465 * 359.55326 * 18 17 16 20 20 C 1.50702 * 125.43673 * 180.21087 * 19 18 17 21 21 O 1.42905 * 109.46945 * 245.28011 * 20 19 18 22 22 Si 1.86298 * 109.47092 * 5.27945 * 20 19 18 23 23 C 1.34179 * 109.12922 * 0.44945 * 19 18 17 24 24 C 1.52996 * 109.47250 * 60.00008 * 10 9 8 25 25 C 1.52998 * 109.47164 * 299.99827 * 24 10 9 26 26 H 1.08997 * 109.47244 * 60.00208 * 1 2 3 27 27 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46847 * 299.99901 * 1 2 3 29 29 H 1.09005 * 109.47177 * 239.99262 * 2 1 3 30 30 H 1.09000 * 109.46969 * 120.00245 * 2 1 3 31 31 H 1.08994 * 109.47487 * 59.99788 * 8 6 4 32 32 H 1.08999 * 109.47031 * 299.99969 * 8 6 4 33 33 H 1.08995 * 109.47195 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47063 * 59.99930 * 9 8 6 35 35 H 1.08998 * 109.47279 * 54.99705 * 12 10 9 36 36 H 1.09001 * 109.47260 * 294.99930 * 12 10 9 37 37 H 0.97002 * 119.99620 * 0.02562 * 13 12 10 38 38 H 1.08002 * 125.79741 * 0.03369 * 17 16 14 39 39 H 1.09002 * 109.47519 * 125.28034 * 20 19 18 40 40 H 0.96700 * 113.99842 * 59.99656 * 21 20 19 41 41 H 1.48497 * 110.00245 * 58.68201 * 22 20 19 42 42 H 1.48501 * 110.00148 * 180.02562 * 22 20 19 43 43 H 1.07994 * 127.02801 * 179.71242 * 23 19 18 44 44 H 1.08994 * 109.47487 * 60.00151 * 24 10 9 45 45 H 1.09009 * 109.47060 * 180.02562 * 24 10 9 46 46 H 1.09000 * 109.47052 * 300.00057 * 25 24 10 47 47 H 1.08995 * 109.47184 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9372 -0.0012 7 1 3.5852 3.4696 0.8888 8 6 5.4487 2.8571 -0.0023 9 6 6.0336 4.2710 -0.0023 10 6 5.5611 5.0183 -1.2510 11 1 5.8964 4.4864 -2.1414 12 6 6.1454 6.4323 -1.2506 13 7 5.7919 7.1071 -2.5020 14 6 6.2012 8.3718 -2.7247 15 8 6.8645 8.9526 -1.8869 16 6 5.8451 9.0508 -3.9832 17 6 5.1134 8.5422 -5.0162 18 8 5.0242 9.4749 -5.9693 19 6 5.6648 10.5961 -5.6036 20 6 5.7665 11.8531 -6.4288 21 8 7.1301 12.0735 -6.7950 22 14 4.7319 11.6713 -7.9674 23 6 6.2048 10.4176 -4.3883 24 6 4.0332 5.0984 -1.2498 25 6 3.4484 3.6847 -1.2498 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.7840 2.3249 -0.8924 32 1 5.7853 2.3251 0.8875 33 1 7.1220 4.2139 -0.0027 34 1 5.6983 4.8029 0.8881 35 1 7.2304 6.3771 -1.1616 36 1 5.7399 6.9929 -0.4083 37 1 5.2625 6.6439 -3.1700 38 1 4.6834 7.5523 -5.0586 39 1 5.4053 12.7005 -5.8461 40 1 7.5179 11.3575 -7.3166 41 1 3.3170 11.4099 -7.6001 42 1 4.8241 12.9041 -8.7901 43 1 6.7853 11.1317 -3.8233 44 1 3.6979 5.6303 -0.3595 45 1 3.6966 5.6305 -2.1397 46 1 3.7836 3.1528 -2.1402 47 1 2.3599 3.7417 -1.2494 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13456056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:01 Heat of formation + Delta-G solvation = -155.031578 kcal Electronic energy + Delta-G solvation = -28761.756900 eV Core-core repulsion = 24491.257601 eV Total energy + Delta-G solvation = -4270.499299 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.70118 -41.82529 -40.70403 -39.39800 -37.99071 -37.72548 -35.96201 -34.06947 -33.10261 -32.36699 -31.76628 -31.52330 -27.90744 -26.56993 -25.15886 -24.14813 -23.72698 -23.04109 -22.29724 -21.60668 -21.08047 -20.54734 -19.33223 -18.72731 -17.84290 -17.67392 -17.60486 -17.47274 -17.31514 -16.84233 -16.43708 -16.05821 -15.84318 -15.62984 -15.24767 -15.03163 -14.87833 -14.65460 -14.59256 -14.23579 -14.02861 -13.87178 -13.72266 -13.61691 -13.45522 -13.23446 -12.99189 -12.88819 -12.81457 -12.56074 -12.24254 -12.21139 -12.09813 -11.86156 -11.57885 -11.44611 -11.32125 -11.13279 -11.06901 -10.95108 -10.61644 -10.17965 -9.77234 -4.96974 0.28323 0.82804 1.10947 1.19002 1.53208 1.64724 1.82167 1.95430 2.09002 2.26804 3.31822 3.43024 3.51617 3.60294 3.60771 3.67605 3.86589 3.95488 3.98827 3.99190 4.03765 4.15532 4.27217 4.30241 4.32295 4.39894 4.42952 4.47022 4.51711 4.52016 4.66369 4.75511 4.82575 4.85382 4.88596 4.91706 4.98000 5.10139 5.11771 5.12962 5.13913 5.18707 5.23377 5.31677 5.37130 5.44815 5.52295 5.84916 6.48755 6.63547 6.66890 7.16413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.078 4.078 7 H 0.123 0.877 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.091 4.091 11 H 0.092 0.908 12 C 0.126 3.874 13 N -0.707 5.707 14 C 0.584 3.416 15 O -0.590 6.590 16 C -0.270 4.270 17 C 0.067 3.933 18 O -0.163 6.163 19 C -0.052 4.052 20 C -0.038 4.038 21 O -0.546 6.546 22 Si 0.800 3.200 23 C -0.154 4.154 24 C -0.110 4.110 25 C -0.104 4.104 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.400 0.600 41 H -0.287 1.287 42 H -0.286 1.286 43 H 0.141 0.859 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -4.036 -4.834 8.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.109 4.109 11 H 0.110 0.890 12 C 0.003 3.997 13 N -0.359 5.359 14 C 0.373 3.627 15 O -0.471 6.471 16 C -0.274 4.274 17 C -0.003 4.003 18 O -0.058 6.058 19 C -0.101 4.101 20 C -0.147 4.147 21 O -0.355 6.355 22 Si 0.703 3.297 23 C -0.174 4.174 24 C -0.148 4.148 25 C -0.142 4.142 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.280 0.720 39 H 0.146 0.854 40 H 0.251 0.749 41 H -0.213 1.213 42 H -0.213 1.213 43 H 0.159 0.841 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.327 -3.127 -4.639 7.726 hybrid contribution 0.273 -0.272 1.104 1.170 sum -5.054 -3.400 -3.535 7.043 Atomic orbital electron populations 1.21818 0.90669 1.04217 1.03773 1.23225 0.96924 0.79519 1.02325 1.86516 1.24385 1.33276 1.83491 1.24443 0.80472 0.93466 0.70903 1.90671 1.61171 1.44592 1.46864 1.21272 0.96572 0.88098 1.03701 0.85919 1.21373 0.91578 0.97655 1.03040 1.21481 1.01116 0.93990 0.98002 1.21387 0.96164 0.93251 1.00137 0.88982 1.21417 0.99905 0.92712 0.85695 1.45664 1.55556 1.13143 1.21570 1.17516 0.78470 0.81611 0.85072 1.90796 1.41478 1.66883 1.47973 1.21488 1.10672 0.97138 0.98145 1.25334 0.95900 0.94666 0.84400 1.83712 1.59548 1.20634 1.41902 1.22747 1.00977 0.89524 0.96829 1.24698 0.91570 0.91544 1.06873 1.86545 1.24457 1.48716 1.75747 0.93169 0.76016 0.83902 0.76588 1.22572 1.02817 0.96141 0.95889 1.21623 0.93533 0.95680 1.03929 1.21501 1.01769 0.95781 0.95109 0.91045 0.88691 0.91343 0.91431 0.91743 0.91578 0.91923 0.90682 0.90668 0.92290 0.92028 0.74603 0.71959 0.85352 0.74911 1.21343 1.21271 0.84071 0.90998 0.89494 0.91048 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.65 10.29 71.98 0.74 1.39 16 2 C 0.05 0.02 6.19 71.98 0.45 0.46 16 3 O -0.36 -0.84 10.12 -51.43 -0.52 -1.36 16 4 C 0.46 1.54 7.26 71.23 0.52 2.05 16 5 O -0.54 -5.53 15.73 21.94 0.35 -5.19 16 6 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 7 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 8 C -0.10 0.29 4.49 30.60 0.14 0.42 16 9 C -0.11 0.66 5.20 30.60 0.16 0.82 16 10 C -0.09 0.75 2.23 -10.80 -0.02 0.72 16 11 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 12 C 0.13 -0.42 5.06 86.38 0.44 0.02 16 13 N -0.71 2.85 5.28 -466.41 -2.46 0.39 16 14 C 0.58 2.98 7.81 86.65 0.68 3.66 16 15 O -0.59 -9.39 16.98 -4.08 -0.07 -9.45 16 16 C -0.27 -0.46 6.31 -18.99 -0.12 -0.58 16 17 C 0.07 -0.46 11.61 67.40 0.78 0.32 16 18 O -0.16 0.58 8.90 4.44 0.04 0.62 16 19 C -0.05 -0.01 6.18 24.76 0.15 0.14 16 20 C -0.04 0.06 2.97 71.24 0.21 0.27 16 21 O -0.55 0.37 12.88 -148.98 -1.92 -1.55 16 22 Si 0.80 -3.15 32.09 68.60 2.20 -0.95 16 23 C -0.15 -0.78 10.90 23.65 0.26 -0.52 16 24 C -0.11 1.09 5.07 30.59 0.16 1.24 16 25 C -0.10 0.79 5.14 30.59 0.16 0.95 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.07 0.05 8.13 -2.38 -0.02 0.03 16 30 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 31 H 0.07 -0.07 8.10 -2.39 -0.02 -0.09 16 32 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 33 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.07 -0.49 8.14 -2.39 -0.02 -0.50 16 35 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.42 -5.03 6.62 -92.71 -0.61 -5.65 16 38 H 0.26 -4.91 7.47 -2.91 -0.02 -4.93 16 39 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 40 H 0.40 -3.64 8.70 -74.06 -0.64 -4.29 16 41 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 42 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.07 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.09 -1.12 7.18 -2.38 -0.02 -1.14 16 46 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.08 -0.63 8.11 -2.39 -0.02 -0.65 16 Total: 0.00 -28.59 391.69 2.04 -26.55 By element: Atomic # 1 Polarization: -20.45 SS G_CDS: -0.24 Total: -20.68 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.66 Total: 11.62 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -2.46 Total: 0.39 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -2.12 Total: -16.93 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.20 Total: -0.95 kcal Total: -28.59 2.04 -26.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13456056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.480 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds