Wall clock time and date at job start Sun Mar 7 2021 07:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46629 * 2 1 4 4 C 1.34235 * 116.99539 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00241 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99663 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47080 * 300.00127 * 6 4 3 8 8 C 1.53002 * 109.47044 * 60.00220 * 6 4 3 9 9 C 1.53004 * 109.47059 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46907 * 299.99674 * 9 8 6 11 11 H 1.08999 * 109.47414 * 300.00588 * 10 9 8 12 12 C 1.52996 * 109.47350 * 179.97438 * 10 9 8 13 13 N 1.46499 * 109.47023 * 64.99924 * 12 10 9 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 10 15 15 O 1.21693 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.46682 * 119.99810 * 180.27605 * 14 13 12 17 17 C 1.37868 * 126.23247 * 179.72519 * 16 14 13 18 18 C 1.50707 * 126.45641 * 0.02562 * 17 16 14 19 19 C 1.39835 * 107.09022 * 180.02562 * 17 16 14 20 20 C 1.35459 * 107.86167 * 0.02562 * 19 17 16 21 21 C 1.50699 * 125.56346 * 179.97438 * 20 19 17 22 22 O 1.42896 * 109.46914 * 65.00142 * 21 20 19 23 23 Si 1.86305 * 109.46775 * 185.00280 * 21 20 19 24 24 N 1.35536 * 108.86691 * 359.73268 * 20 19 17 25 25 C 1.53003 * 109.47323 * 60.00099 * 10 9 8 26 26 C 1.52997 * 109.47292 * 300.00239 * 25 10 9 27 27 H 1.09004 * 109.46909 * 299.99797 * 1 2 3 28 28 H 1.08994 * 109.47309 * 60.00136 * 1 2 3 29 29 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47089 * 240.00420 * 2 1 3 31 31 H 1.08994 * 109.47309 * 119.99864 * 2 1 3 32 32 H 1.08997 * 109.46706 * 299.99595 * 8 6 4 33 33 H 1.09000 * 109.47257 * 60.00016 * 8 6 4 34 34 H 1.09001 * 109.46997 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47124 * 59.99872 * 9 8 6 36 36 H 1.08998 * 109.47328 * 305.00259 * 12 10 9 37 37 H 1.08997 * 109.47540 * 185.00005 * 12 10 9 38 38 H 0.97000 * 120.00069 * 0.02562 * 13 12 10 39 39 H 1.08992 * 109.47015 * 90.00203 * 18 17 16 40 40 H 1.09006 * 109.46893 * 209.99751 * 18 17 16 41 41 H 1.08994 * 109.47207 * 329.99592 * 18 17 16 42 42 H 1.08000 * 126.07168 * 180.02562 * 19 17 16 43 43 H 1.08996 * 109.47336 * 304.99883 * 21 20 19 44 44 H 0.96700 * 113.99837 * 60.00456 * 22 21 20 45 45 H 1.48495 * 109.99953 * 58.68187 * 23 21 20 46 46 H 1.48502 * 109.99579 * 180.02562 * 23 21 20 47 47 H 0.97003 * 125.67180 * 180.26087 * 24 20 19 48 48 H 1.09000 * 109.46940 * 59.99660 * 25 10 9 49 49 H 1.09002 * 109.47693 * 179.97438 * 25 10 9 50 50 H 1.08997 * 109.47684 * 179.97438 * 26 25 10 51 51 H 1.09006 * 109.46907 * 299.99937 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 -0.0012 7 1 3.5843 3.4694 -0.8912 8 6 3.4495 3.6848 1.2481 9 6 4.0337 5.0989 1.2471 10 6 5.5616 5.0195 1.2463 11 1 5.8983 4.4878 2.1363 12 6 6.1459 6.4335 1.2447 13 7 5.7936 7.1088 2.4961 14 6 6.2039 8.3732 2.7183 15 8 6.8667 8.9541 1.8791 16 6 5.8563 9.0472 3.9738 17 6 6.2108 10.3294 4.3357 18 6 7.0251 11.2981 3.5173 19 6 5.6724 10.5619 5.6051 20 6 5.0135 9.4421 5.9884 21 6 4.2839 9.2581 7.2941 22 8 3.1735 10.1558 7.3498 23 14 3.6710 7.5033 7.4209 24 7 5.1130 8.5163 5.0035 25 6 6.0328 4.2722 -0.0029 26 6 5.4485 2.8581 -0.0020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3610 3.7418 1.2484 33 1 3.7858 3.1530 2.1381 34 1 3.6984 5.6311 2.1374 35 1 3.6970 5.6306 0.3571 36 1 5.7393 6.9937 0.4027 37 1 7.2307 6.3783 1.1546 38 1 5.2656 6.6457 3.1652 39 1 6.3606 11.8912 2.8891 40 1 7.5811 11.9584 4.1830 41 1 7.7227 10.7454 2.8881 42 1 5.7654 11.4725 6.1783 43 1 4.9618 9.4668 8.1217 44 1 2.5278 10.0271 6.6416 45 1 4.8133 6.5587 7.3321 46 1 2.9490 7.3090 8.7040 47 1 4.7267 7.6267 5.0223 48 1 5.6961 4.8038 -0.8929 49 1 7.1213 4.2159 -0.0038 50 1 5.7838 2.3259 -0.8922 51 1 5.7852 2.3265 0.8880 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_13940406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:04 Heat of formation + Delta-G solvation = -130.942731 kcal Electronic energy + Delta-G solvation = -31219.332052 eV Core-core repulsion = 26892.058367 eV Total energy + Delta-G solvation = -4327.273686 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62097 -41.81474 -40.48720 -39.35785 -37.74579 -37.67621 -36.04104 -33.75710 -33.12432 -32.35706 -31.73860 -31.24872 -28.41144 -27.98386 -26.37698 -24.60795 -23.75259 -23.29494 -22.33608 -21.70788 -21.52356 -20.82867 -20.29631 -19.66808 -18.72275 -17.87903 -17.66705 -17.56807 -16.92756 -16.79001 -16.65684 -16.28775 -15.83777 -15.38061 -15.30777 -14.98550 -14.93278 -14.89041 -14.66926 -14.49382 -14.17464 -14.00158 -13.82366 -13.67220 -13.58516 -13.49536 -13.42249 -13.22295 -13.00920 -12.94625 -12.86675 -12.56073 -12.55430 -12.23648 -12.20338 -12.09055 -11.85534 -11.57531 -11.43697 -11.23767 -11.10720 -11.01407 -10.53090 -10.22376 -9.81499 -9.17997 -5.17048 0.29368 1.11566 1.13854 1.46824 1.60052 1.65159 1.82952 1.96471 2.12441 2.28442 3.42968 3.43705 3.60212 3.67808 3.70734 3.81716 3.87604 3.95953 3.99673 4.04167 4.12895 4.17908 4.26584 4.29938 4.32951 4.40731 4.42657 4.47344 4.52592 4.67940 4.71921 4.75046 4.82612 4.85033 4.87119 4.89251 4.90145 4.98975 5.10258 5.12114 5.12566 5.13755 5.19072 5.23797 5.28228 5.35510 5.39349 5.45261 5.52387 5.65106 5.84859 6.30282 6.49622 6.67387 6.71805 7.11006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.544 6.544 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.105 4.105 9 C -0.110 4.110 10 C -0.094 4.094 11 H 0.086 0.914 12 C 0.127 3.873 13 N -0.716 5.716 14 C 0.588 3.412 15 O -0.562 6.562 16 C -0.060 4.060 17 C -0.093 4.093 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.029 3.971 21 C -0.048 4.048 22 O -0.548 6.548 23 Si 0.771 3.229 24 N -0.517 5.517 25 C -0.107 4.107 26 C -0.100 4.100 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.146 0.854 43 H 0.124 0.876 44 H 0.397 0.603 45 H -0.271 1.271 46 H -0.289 1.289 47 H 0.427 0.573 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -2.474 0.707 6.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.434 6.434 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.113 4.113 11 H 0.105 0.895 12 C 0.004 3.996 13 N -0.368 5.368 14 C 0.376 3.624 15 O -0.441 6.441 16 C -0.173 4.173 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.217 4.217 20 C -0.089 4.089 21 C -0.159 4.159 22 O -0.355 6.355 23 Si 0.674 3.326 24 N -0.119 5.119 25 C -0.145 4.145 26 C -0.137 4.137 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.247 0.753 45 H -0.197 1.197 46 H -0.215 1.215 47 H 0.269 0.731 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.580 -3.108 1.014 6.467 hybrid contribution 0.366 -0.491 0.421 0.743 sum -5.214 -3.599 1.435 6.496 Atomic orbital electron populations 1.21818 0.90624 1.04189 1.03829 1.23221 0.96954 0.79547 1.02267 1.86519 1.24345 1.33212 1.83485 1.24464 0.80485 0.93491 0.70881 1.90669 1.61194 1.44650 1.46896 1.21276 0.96470 0.88070 1.03779 0.85704 1.21513 1.01939 0.95787 0.94995 1.21630 0.93368 0.95682 1.04087 1.21409 0.96388 0.93462 0.99992 0.89522 1.21438 1.00014 0.92584 0.85567 1.45761 1.55889 1.13473 1.21641 1.17119 0.79113 0.81576 0.84603 1.90831 1.40679 1.66366 1.46265 1.20067 1.08894 0.96294 0.92003 1.20217 1.00483 0.93501 0.95998 1.20313 0.98652 0.97078 0.98597 1.20754 1.04494 0.99650 0.96758 1.20989 1.04431 0.90556 0.92887 1.24826 0.90265 1.07602 0.93162 1.86538 1.33910 1.59767 1.55255 0.94455 0.81051 0.71132 0.85984 1.41856 1.41698 1.14993 1.13363 1.21471 1.01058 0.93915 0.98025 1.21379 0.91717 0.97732 1.02908 0.90995 0.91271 0.88771 0.91778 0.91523 0.89576 0.91298 0.89570 0.90559 0.91327 0.92134 0.75493 0.91386 0.90994 0.91838 0.83647 0.85877 0.75257 1.19735 1.21548 0.73099 0.90355 0.90779 0.91920 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.72 10.29 71.98 0.74 1.46 16 2 C 0.05 0.00 6.19 71.98 0.45 0.44 16 3 O -0.36 -0.63 10.12 -51.46 -0.52 -1.15 16 4 C 0.46 1.34 7.26 71.24 0.52 1.85 16 5 O -0.54 -5.43 15.73 21.98 0.35 -5.09 16 6 C -0.08 0.32 2.63 -11.54 -0.03 0.29 16 7 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 8 C -0.10 0.87 5.14 30.60 0.16 1.02 16 9 C -0.11 1.18 5.08 30.59 0.16 1.34 16 10 C -0.09 0.81 2.23 -10.80 -0.02 0.79 16 11 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 12 C 0.13 -0.56 5.06 86.38 0.44 -0.13 16 13 N -0.72 3.10 5.28 -467.09 -2.47 0.64 16 14 C 0.59 2.25 7.79 86.45 0.67 2.92 16 15 O -0.56 -6.78 14.80 -4.33 -0.06 -6.84 16 16 C -0.06 -0.14 7.06 40.35 0.28 0.14 16 17 C -0.09 -0.50 6.21 -19.56 -0.12 -0.62 16 18 C -0.09 -0.53 9.83 71.24 0.70 0.17 16 19 C -0.19 -0.52 10.66 22.01 0.23 -0.29 16 20 C 0.03 -0.06 6.10 41.34 0.25 0.19 16 21 C -0.05 0.23 2.98 71.24 0.21 0.44 16 22 O -0.55 1.85 12.88 -148.98 -1.92 -0.07 16 23 Si 0.77 -6.36 30.98 68.60 2.13 -4.23 16 24 N -0.52 2.36 5.47 -171.93 -0.94 1.42 16 25 C -0.11 0.72 5.20 30.59 0.16 0.88 16 26 C -0.10 0.32 4.50 30.59 0.14 0.46 16 27 H 0.07 -0.39 8.14 -2.39 -0.02 -0.40 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 31 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 32 H 0.09 -0.75 8.11 -2.39 -0.02 -0.77 16 33 H 0.07 -0.53 8.14 -2.39 -0.02 -0.54 16 34 H 0.09 -1.19 7.18 -2.39 -0.02 -1.21 16 35 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.41 -4.47 6.78 -92.71 -0.63 -5.10 16 39 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.06 0.60 6.48 -2.39 -0.02 0.59 16 42 H 0.15 0.30 8.06 -2.91 -0.02 0.27 16 43 H 0.12 -0.45 7.96 -2.39 -0.02 -0.47 16 44 H 0.40 -4.56 8.70 -74.06 -0.64 -5.20 16 45 H -0.27 1.22 7.11 99.48 0.71 1.93 16 46 H -0.29 0.01 7.11 99.48 0.71 0.72 16 47 H 0.43 -5.02 6.00 -92.71 -0.56 -5.58 16 48 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.07 -0.45 8.14 -2.39 -0.02 -0.46 16 50 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 51 H 0.06 -0.06 8.10 -2.38 -0.02 -0.08 16 Total: 0.00 -24.80 411.25 0.65 -24.15 By element: Atomic # 1 Polarization: -19.35 SS G_CDS: -0.84 Total: -20.19 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 4.93 Total: 11.37 kcal Atomic # 7 Polarization: 5.46 SS G_CDS: -3.41 Total: 2.05 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -2.16 Total: -13.15 kcal Atomic # 14 Polarization: -6.36 SS G_CDS: 2.13 Total: -4.23 kcal Total: -24.80 0.65 -24.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_13940406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.794 kcal (2) G-P(sol) polarization free energy of solvation -24.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds