Wall clock time and date at job start Sun Mar 7 2021 07:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46811 * 2 1 4 4 C 1.34224 * 116.99978 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99934 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00303 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.47467 * 59.99366 * 6 4 3 8 8 C 1.53000 * 109.47324 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47286 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.47376 * 300.00407 * 9 8 6 11 11 H 1.08998 * 109.47190 * 299.99964 * 10 9 8 12 12 C 1.52995 * 109.46998 * 179.97438 * 10 9 8 13 13 N 1.46505 * 109.47121 * 175.00176 * 12 10 9 14 14 C 1.34772 * 120.00173 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00265 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.47484 * 179.97438 * 16 14 13 18 18 C 1.34854 * 125.89121 * 275.32341 * 17 16 14 19 19 C 1.40890 * 107.41722 * 180.15763 * 18 17 16 20 20 C 1.34856 * 107.41764 * 359.55980 * 19 18 17 21 21 C 1.50695 * 125.88889 * 180.28203 * 20 19 18 22 22 O 1.42904 * 109.46781 * 119.98586 * 21 20 19 23 23 Si 1.86291 * 109.47397 * 359.97438 * 21 20 19 24 24 N 1.36337 * 108.21648 * 0.27154 * 20 19 18 25 25 C 1.53000 * 109.47245 * 59.99568 * 10 9 8 26 26 C 1.52998 * 109.46885 * 299.99751 * 6 4 3 27 27 H 1.08999 * 109.47195 * 300.00027 * 1 2 3 28 28 H 1.09001 * 109.47043 * 60.00595 * 1 2 3 29 29 H 1.09006 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47195 * 239.99973 * 2 1 3 31 31 H 1.09001 * 109.47043 * 119.99405 * 2 1 3 32 32 H 1.09002 * 109.47091 * 60.00081 * 8 6 4 33 33 H 1.08992 * 109.47245 * 299.99843 * 8 6 4 34 34 H 1.08995 * 109.47054 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46517 * 60.00308 * 9 8 6 36 36 H 1.08996 * 109.47628 * 55.00155 * 12 10 9 37 37 H 1.09000 * 109.47219 * 294.99488 * 12 10 9 38 38 H 0.97000 * 119.99680 * 359.97438 * 13 12 10 39 39 H 1.09001 * 109.47211 * 59.98915 * 16 14 13 40 40 H 1.09004 * 109.46963 * 299.99521 * 16 14 13 41 41 H 1.07999 * 126.28920 * 0.02562 * 18 17 16 42 42 H 1.08002 * 126.29400 * 179.83402 * 19 18 17 43 43 H 1.09003 * 109.47396 * 239.97698 * 21 20 19 44 44 H 0.96696 * 114.00303 * 180.02562 * 22 21 20 45 45 H 1.48498 * 110.00319 * 298.67715 * 23 21 20 46 46 H 1.48508 * 110.00352 * 59.99641 * 23 21 20 47 47 H 0.97005 * 125.63361 * 179.97438 * 24 20 19 48 48 H 1.09002 * 109.47091 * 59.99827 * 25 10 9 49 49 H 1.09001 * 109.47337 * 180.02562 * 25 10 9 50 50 H 1.09002 * 109.47217 * 299.99727 * 26 6 4 51 51 H 1.08995 * 109.47494 * 59.99955 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5850 3.4699 0.8887 8 6 5.4486 2.8575 -0.0010 9 6 6.0333 4.2713 -0.0023 10 6 5.5618 5.0172 -1.2522 11 1 5.8977 4.4843 -2.1417 12 6 6.1461 6.4312 -1.2530 13 7 5.7933 7.1046 -2.5054 14 6 6.2036 8.3686 -2.7296 15 8 6.8645 8.9488 -1.8944 16 6 5.8412 9.0611 -4.0181 17 6 6.4166 10.4539 -4.0189 18 6 5.8466 11.5451 -3.4686 19 6 6.7114 12.6335 -3.6977 20 6 7.7816 12.1641 -4.3707 21 6 8.9669 12.9773 -4.8232 22 8 10.1563 12.4599 -4.2235 23 14 8.7341 14.7530 -4.3101 24 7 7.6063 10.8270 -4.5708 25 6 4.0339 5.0972 -1.2523 26 6 3.4487 3.6840 -1.2505 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 5.7846 2.3249 -0.8908 33 1 5.7845 2.3258 0.8891 34 1 7.1218 4.2142 -0.0018 35 1 5.6974 4.8042 0.8873 36 1 7.2309 6.3761 -1.1632 37 1 5.7399 6.9927 -0.4117 38 1 5.2650 6.6404 -3.1735 39 1 4.7564 9.1164 -4.1082 40 1 6.2475 8.4993 -4.8592 41 1 4.9000 11.5789 -2.9498 42 1 6.5494 13.6552 -3.3871 43 1 9.0532 12.9211 -5.9083 44 1 10.9607 12.9364 -4.4705 45 1 7.5178 15.3122 -4.9527 46 1 8.6151 14.8434 -2.8325 47 1 8.2255 10.2383 -5.0302 48 1 3.6979 5.6301 -0.3627 49 1 3.6979 5.6282 -2.1429 50 1 3.7844 3.1516 -2.1404 51 1 2.3602 3.7410 -1.2502 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_14644196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:08 Heat of formation + Delta-G solvation = -133.110321 kcal Electronic energy + Delta-G solvation = -30389.863786 eV Core-core repulsion = 26062.496106 eV Total energy + Delta-G solvation = -4327.367679 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.43527 -41.84897 -40.71386 -39.44271 -37.75893 -37.67318 -35.90895 -33.56325 -32.93586 -32.18339 -32.06372 -31.75021 -29.66009 -27.45445 -25.23727 -24.47151 -23.77427 -23.21661 -21.91351 -21.62553 -21.49407 -21.12245 -20.69100 -18.75244 -18.46999 -18.35214 -18.06200 -17.69249 -17.56689 -16.85056 -16.59791 -15.96543 -15.84601 -15.37631 -15.28475 -15.05339 -15.01447 -14.89355 -14.87590 -14.67130 -14.41718 -14.12111 -13.92855 -13.72642 -13.62276 -13.44074 -13.37671 -13.24724 -13.00237 -12.91079 -12.86356 -12.58452 -12.55746 -12.25476 -12.12638 -12.04583 -11.88116 -11.59826 -11.46762 -11.24502 -11.13460 -10.97606 -10.45100 -10.10905 -9.96031 -9.06538 -4.98317 0.95089 1.08425 1.27443 1.61055 1.62448 1.66628 1.74082 2.05778 2.24793 2.42585 3.41031 3.44855 3.57046 3.61787 3.64750 3.85121 3.91213 3.93698 3.96342 3.99716 4.02196 4.15028 4.16564 4.24903 4.26575 4.30108 4.32891 4.37440 4.44772 4.48882 4.56481 4.63598 4.66368 4.73322 4.80970 4.83092 4.87207 4.95672 5.06145 5.07551 5.09279 5.11415 5.13196 5.16078 5.20967 5.30781 5.39086 5.43312 5.50977 5.84020 5.96888 6.50289 6.60263 6.64449 6.84698 7.25853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.090 4.090 11 H 0.089 0.911 12 C 0.127 3.873 13 N -0.714 5.714 14 C 0.508 3.492 15 O -0.582 6.582 16 C -0.065 4.065 17 C 0.038 3.962 18 C -0.200 4.200 19 C -0.229 4.229 20 C 0.018 3.982 21 C -0.060 4.060 22 O -0.570 6.570 23 Si 0.814 3.186 24 N -0.531 5.531 25 C -0.109 4.109 26 C -0.104 4.104 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.418 0.582 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.406 0.594 45 H -0.287 1.287 46 H -0.309 1.309 47 H 0.423 0.577 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -0.659 -6.291 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.109 4.109 11 H 0.107 0.893 12 C 0.003 3.997 13 N -0.368 5.368 14 C 0.295 3.705 15 O -0.462 6.462 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.225 4.225 19 C -0.254 4.254 20 C -0.096 4.096 21 C -0.169 4.169 22 O -0.381 6.381 23 Si 0.720 3.280 24 N -0.126 5.126 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.258 0.742 45 H -0.214 1.214 46 H -0.238 1.238 47 H 0.262 0.738 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.088 0.912 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.353 -0.528 -5.137 5.675 hybrid contribution -0.130 -1.327 -0.003 1.333 sum -2.483 -1.855 -5.140 6.002 Atomic orbital electron populations 1.21823 0.90618 1.04239 1.03785 1.23237 0.96963 0.79480 1.02328 1.86517 1.24339 1.33321 1.83474 1.24422 0.80498 0.93433 0.70904 1.90668 1.61173 1.44587 1.46880 1.21265 0.96529 0.88153 1.03666 0.85870 1.21371 0.91642 0.97622 1.03003 1.21482 1.01005 0.94062 0.98066 1.21372 0.96207 0.93456 0.99876 0.89291 1.21328 0.99435 0.92685 0.86273 1.45863 1.55878 1.13840 1.21176 1.21003 0.78795 0.81824 0.88882 1.90779 1.40578 1.66282 1.48525 1.20275 1.05015 0.89119 0.96124 1.19980 0.88374 0.96114 1.03192 1.20788 1.02488 0.92223 1.06961 1.20710 0.97854 0.99405 1.07428 1.20157 0.98005 0.84747 1.06685 1.24609 0.83604 1.07769 1.00913 1.86458 1.17279 1.61153 1.73183 0.94509 0.83815 0.73174 0.76534 1.41847 1.17420 1.08067 1.45272 1.21599 0.93501 0.95636 1.03890 1.21495 1.01794 0.95852 0.95045 0.91303 0.91063 0.88651 0.91459 0.91698 0.91677 0.91866 0.90851 0.90722 0.92880 0.92411 0.74402 0.83506 0.84843 0.84010 0.85661 0.88360 0.74239 1.21388 1.23766 0.73848 0.90993 0.89522 0.91249 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.12 10.12 -51.35 -0.52 -1.64 16 4 C 0.46 1.96 7.25 71.23 0.52 2.48 16 5 O -0.54 -6.00 15.73 21.96 0.35 -5.65 16 6 C -0.08 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 8 C -0.10 0.17 4.49 30.59 0.14 0.31 16 9 C -0.11 0.51 5.20 30.59 0.16 0.67 16 10 C -0.09 0.62 2.23 -10.80 -0.02 0.60 16 11 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 12 C 0.13 -0.30 5.06 86.38 0.44 0.14 16 13 N -0.71 3.17 5.28 -463.07 -2.45 0.72 16 14 C 0.51 1.29 7.82 87.66 0.69 1.98 16 15 O -0.58 -8.64 16.03 -3.05 -0.05 -8.69 16 16 C -0.07 0.23 6.24 29.10 0.18 0.41 16 17 C 0.04 0.21 5.66 41.08 0.23 0.45 16 18 C -0.20 -2.01 10.77 22.14 0.24 -1.77 16 19 C -0.23 -2.76 9.37 22.14 0.21 -2.55 16 20 C 0.02 0.16 6.54 41.08 0.27 0.43 16 21 C -0.06 -0.11 3.07 71.23 0.22 0.11 16 22 O -0.57 -1.26 12.86 -148.98 -1.92 -3.18 16 23 Si 0.81 0.35 30.58 68.60 2.10 2.44 16 24 N -0.53 -3.12 6.07 -171.12 -1.04 -4.16 16 25 C -0.11 0.92 5.07 30.58 0.16 1.08 16 26 C -0.10 0.65 5.13 30.58 0.16 0.81 16 27 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 30 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 31 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 32 H 0.06 0.02 8.10 -2.39 -0.02 0.00 16 33 H 0.06 0.06 8.10 -2.39 -0.02 0.04 16 34 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.03 16 38 H 0.42 -4.84 7.66 -92.71 -0.71 -5.55 16 39 H 0.15 -1.38 8.14 -2.39 -0.02 -1.40 16 40 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 41 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.13 1.47 6.22 -2.91 -0.02 1.46 16 43 H 0.10 -0.38 7.96 -2.39 -0.02 -0.40 16 44 H 0.41 -3.75 8.74 -74.06 -0.65 -4.39 16 45 H -0.29 -1.59 7.11 99.48 0.71 -0.88 16 46 H -0.31 -3.14 7.11 99.48 0.71 -2.44 16 47 H 0.42 0.38 8.96 -92.70 -0.83 -0.45 16 48 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.09 -0.98 7.18 -2.39 -0.02 -0.99 16 50 H 0.07 -0.40 8.14 -2.39 -0.02 -0.41 16 51 H 0.08 -0.53 8.11 -2.39 -0.02 -0.55 16 Total: 0.00 -32.99 415.13 0.00 -32.99 By element: Atomic # 1 Polarization: -18.75 SS G_CDS: -1.20 Total: -19.95 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.73 Total: 7.12 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -3.49 Total: -3.44 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -2.14 Total: -19.16 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: 2.10 Total: 2.44 kcal Total: -32.99 0.00 -32.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_14644196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.119 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds