Wall clock time and date at job start Sun Mar 7 2021 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47567 * 2 1 4 4 C 1.34231 * 117.00341 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00163 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47173 * 299.99781 * 6 4 3 8 8 C 1.53000 * 109.47126 * 59.99483 * 6 4 3 9 9 C 1.53001 * 109.47048 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47041 * 300.00053 * 9 8 6 11 11 H 1.08994 * 109.47139 * 300.00219 * 10 9 8 12 12 C 1.53001 * 109.47041 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.46926 * 65.00264 * 12 10 9 14 14 C 1.34782 * 119.99859 * 180.02562 * 13 12 10 15 15 O 1.21281 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00001 * 179.97438 * 14 13 12 17 17 C 1.53534 * 109.87426 * 278.23969 * 16 14 13 18 18 C 1.53041 * 108.56533 * 179.48212 * 17 16 14 19 19 C 1.50212 * 110.31610 * 49.56637 * 18 17 16 20 20 C 1.50694 * 118.54915 * 159.95071 * 19 18 17 21 21 O 1.42908 * 109.46830 * 300.00451 * 20 19 18 22 22 Si 1.86296 * 109.47377 * 180.02562 * 20 19 18 23 23 C 1.31224 * 122.92922 * 339.68114 * 19 18 17 24 24 N 1.38921 * 121.77209 * 0.94927 * 23 19 18 25 25 C 1.53000 * 109.47243 * 60.00066 * 10 9 8 26 26 C 1.52995 * 109.47301 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.46913 * 300.00244 * 1 2 3 28 28 H 1.08995 * 109.46719 * 60.00187 * 1 2 3 29 29 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47564 * 239.99478 * 2 1 3 31 31 H 1.09004 * 109.47302 * 119.99966 * 2 1 3 32 32 H 1.08998 * 109.47250 * 300.00400 * 8 6 4 33 33 H 1.09004 * 109.46851 * 60.00101 * 8 6 4 34 34 H 1.09005 * 109.46970 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.47333 * 60.00153 * 9 8 6 36 36 H 1.08995 * 109.47207 * 304.99957 * 12 10 9 37 37 H 1.08996 * 109.46903 * 184.99805 * 12 10 9 38 38 H 0.96995 * 120.00626 * 359.97438 * 13 12 10 39 39 H 1.09006 * 109.81280 * 39.13267 * 16 14 13 40 40 H 1.09002 * 109.61836 * 299.20113 * 17 16 14 41 41 H 1.08999 * 109.62946 * 59.75886 * 17 16 14 42 42 H 1.08997 * 109.33768 * 169.82686 * 18 17 16 43 43 H 1.09002 * 109.32923 * 289.48584 * 18 17 16 44 44 H 1.09003 * 109.46955 * 60.00038 * 20 19 18 45 45 H 0.96696 * 114.00105 * 299.99213 * 21 20 19 46 46 H 1.48492 * 110.00257 * 58.67974 * 22 20 19 47 47 H 1.48496 * 109.99976 * 180.02562 * 22 20 19 48 48 H 1.07997 * 119.15006 * 180.66950 * 23 19 18 49 49 H 0.97001 * 120.56264 * 166.44055 * 24 23 19 50 50 H 1.09004 * 109.46851 * 59.99964 * 25 10 9 51 51 H 1.08998 * 109.47250 * 179.97438 * 25 10 9 52 52 H 1.09003 * 109.47618 * 59.99422 * 26 6 4 53 53 H 1.09004 * 109.46900 * 300.00036 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 -0.0012 7 1 3.5846 3.4692 -0.8912 8 6 3.4497 3.6847 1.2480 9 6 4.0341 5.0987 1.2470 10 6 5.5620 5.0191 1.2463 11 1 5.8985 4.4874 2.1363 12 6 6.1463 6.4331 1.2459 13 7 5.7940 7.1073 2.4979 14 6 6.2036 8.3719 2.7207 15 8 6.8642 8.9515 1.8849 16 6 5.8407 9.0657 4.0083 17 6 4.4164 9.6309 3.9132 18 6 4.0746 10.3162 5.2383 19 6 5.1756 11.2564 5.6384 20 6 4.8653 12.3486 6.6292 21 8 3.8393 13.1924 6.1022 22 14 6.3996 13.3583 6.9412 23 6 6.3971 11.1661 5.1675 24 7 6.7539 10.1944 4.2411 25 6 6.0332 4.2717 -0.0029 26 6 5.4487 2.8572 -0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3612 3.7417 1.2483 33 1 3.7859 3.1528 2.1380 34 1 3.6987 5.6310 2.1372 35 1 3.6975 5.6303 0.3570 36 1 5.7400 6.9940 0.4043 37 1 7.2312 6.3778 1.1559 38 1 5.2654 6.6440 3.1662 39 1 5.9043 8.3616 4.8380 40 1 4.3641 10.3568 3.1017 41 1 3.7121 8.8198 3.7284 42 1 3.1456 10.8752 5.1264 43 1 3.9496 9.5603 6.0137 44 1 4.5256 11.9046 7.5649 45 1 4.0732 13.6220 5.2681 46 1 6.8905 13.9432 5.6677 47 1 6.1069 14.4385 7.9173 48 1 7.1445 11.8686 5.5055 49 1 7.5932 10.2571 3.7589 50 1 5.6966 4.8034 -0.8929 51 1 7.1217 4.2154 -0.0036 52 1 5.7848 2.3245 -0.8907 53 1 5.7846 2.3254 0.8892 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_15413834.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:11 Heat of formation + Delta-G solvation = -154.527012 kcal Electronic energy + Delta-G solvation = -31561.606173 eV Core-core repulsion = 27205.998318 eV Total energy + Delta-G solvation = -4355.607855 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.208 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.84197 -41.36914 -39.86873 -39.22197 -37.74755 -37.46711 -35.95970 -33.46824 -33.15450 -32.82253 -32.08146 -31.71053 -28.33277 -26.81490 -25.33395 -24.60066 -23.78495 -23.60849 -23.08350 -21.66968 -21.57821 -20.71715 -19.39920 -19.07635 -18.73284 -18.05783 -17.67645 -17.56359 -17.23596 -16.76158 -16.37198 -16.22796 -15.93130 -15.64355 -15.36648 -15.27218 -15.21259 -14.94075 -14.71012 -14.61861 -14.39567 -14.15648 -13.92718 -13.79427 -13.62879 -13.49999 -13.23250 -13.12647 -12.99926 -12.90813 -12.82892 -12.56352 -12.35809 -12.24215 -12.10007 -11.88762 -11.85235 -11.72545 -11.58207 -11.44122 -11.22833 -11.19365 -11.10159 -10.83387 -10.34932 -10.13463 -8.42589 -4.90730 1.10421 1.32769 1.43349 1.52454 1.60121 1.64425 1.95435 2.00961 2.67631 3.43000 3.52930 3.59298 3.63493 3.68363 3.80573 3.86774 3.90782 3.95250 3.99110 4.03425 4.09423 4.16835 4.27825 4.31696 4.36196 4.40014 4.47391 4.49307 4.51686 4.63829 4.67161 4.70177 4.74909 4.81798 4.83396 4.85986 4.88419 4.98347 5.07837 5.10335 5.11840 5.13276 5.18671 5.23477 5.24810 5.31202 5.33907 5.38472 5.44592 5.52502 5.60439 6.26521 6.49064 6.62112 6.66312 6.83636 7.14642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.105 4.105 9 C -0.109 4.109 10 C -0.092 4.092 11 H 0.089 0.911 12 C 0.126 3.874 13 N -0.709 5.709 14 C 0.511 3.489 15 O -0.578 6.578 16 C 0.138 3.862 17 C -0.120 4.120 18 C -0.053 4.053 19 C -0.284 4.284 20 C -0.054 4.054 21 O -0.556 6.556 22 Si 0.741 3.259 23 C 0.141 3.859 24 N -0.737 5.737 25 C -0.107 4.107 26 C -0.099 4.099 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.418 0.582 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.381 0.619 46 H -0.294 1.294 47 H -0.312 1.312 48 H 0.143 0.857 49 H 0.406 0.594 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.062 0.938 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 -3.999 1.890 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.111 4.111 11 H 0.107 0.893 12 C 0.003 3.997 13 N -0.361 5.361 14 C 0.297 3.703 15 O -0.457 6.457 16 C 0.029 3.971 17 C -0.159 4.159 18 C -0.090 4.090 19 C -0.294 4.294 20 C -0.164 4.164 21 O -0.363 6.363 22 Si 0.649 3.351 23 C 0.020 3.980 24 N -0.369 5.369 25 C -0.145 4.145 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.134 0.866 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.230 0.770 46 H -0.221 1.221 47 H -0.241 1.241 48 H 0.159 0.841 49 H 0.243 0.757 50 H 0.094 0.906 51 H 0.093 0.907 52 H 0.081 0.919 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.623 -3.464 1.770 4.215 hybrid contribution -0.396 0.108 -1.051 1.128 sum -2.018 -3.355 0.719 3.981 Atomic orbital electron populations 1.21818 0.90652 1.04222 1.03781 1.23227 0.96938 0.79513 1.02313 1.86517 1.24389 1.33283 1.83485 1.24460 0.80476 0.93498 0.70895 1.90668 1.61178 1.44607 1.46879 1.21275 0.96589 0.88064 1.03662 0.85840 1.21505 1.01773 0.95932 0.95037 1.21613 0.93616 0.95549 1.03898 1.21385 0.96125 0.93590 0.99952 0.89294 1.21386 0.99845 0.92564 0.85925 1.45845 1.55345 1.13552 1.21388 1.20868 0.78824 0.82054 0.88531 1.90730 1.40787 1.66278 1.47898 1.21140 0.91540 0.89679 0.94744 1.21824 0.94138 1.01275 0.98641 1.19957 0.96526 0.96818 0.95747 1.20969 0.94760 1.04651 1.09041 1.24806 0.99859 0.93359 0.98407 1.86531 1.42349 1.63878 1.43553 0.94761 0.80130 0.81981 0.78198 1.20517 0.95284 0.91737 0.90449 1.44394 1.23397 1.24451 1.44680 1.21486 1.01091 0.93899 0.98043 1.21388 0.91575 0.97774 1.02973 0.91069 0.91304 0.88686 0.91711 0.91481 0.89906 0.91284 0.89582 0.90873 0.92009 0.92202 0.74437 0.86613 0.92944 0.87989 0.91414 0.90069 0.86736 0.77032 1.22126 1.24092 0.84085 0.75723 0.90607 0.90669 0.91924 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 0.02 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.88 10.12 -51.43 -0.52 -1.40 16 4 C 0.46 1.58 7.26 71.24 0.52 2.09 16 5 O -0.54 -5.59 15.73 21.97 0.35 -5.24 16 6 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 7 H 0.12 -0.77 8.14 -2.38 -0.02 -0.79 16 8 C -0.10 0.78 5.13 30.59 0.16 0.93 16 9 C -0.11 1.12 5.08 30.59 0.16 1.27 16 10 C -0.09 0.82 2.22 -10.79 -0.02 0.80 16 11 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 12 C 0.13 -0.69 5.07 86.38 0.44 -0.25 16 13 N -0.71 4.84 5.28 -463.07 -2.45 2.39 16 14 C 0.51 -0.31 7.08 87.66 0.62 0.31 16 15 O -0.58 -5.13 16.10 -3.03 -0.05 -5.18 16 16 C 0.14 -0.55 3.35 44.32 0.15 -0.40 16 17 C -0.12 0.49 5.48 30.79 0.17 0.66 16 18 C -0.05 0.14 5.83 29.71 0.17 0.32 16 19 C -0.28 0.30 5.45 -16.86 -0.09 0.21 16 20 C -0.05 0.00 2.83 71.23 0.20 0.20 16 21 O -0.56 -2.23 12.54 -148.98 -1.87 -4.10 16 22 Si 0.74 -0.21 29.67 68.60 2.04 1.83 16 23 C 0.14 -0.21 9.63 83.31 0.80 0.59 16 24 N -0.74 0.70 5.46 -328.92 -1.80 -1.10 16 25 C -0.11 0.73 5.21 30.61 0.16 0.89 16 26 C -0.10 0.31 4.50 30.61 0.14 0.45 16 27 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.06 0.09 8.13 -2.38 -0.02 0.07 16 31 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 32 H 0.08 -0.61 8.11 -2.39 -0.02 -0.63 16 33 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 34 H 0.09 -1.11 7.18 -2.38 -0.02 -1.12 16 35 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.42 -5.40 7.65 -92.71 -0.71 -6.10 16 39 H 0.12 -1.01 8.14 -2.38 -0.02 -1.03 16 40 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.07 -0.01 7.82 -2.39 -0.02 -0.03 16 43 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.11 -0.15 7.96 -2.39 -0.02 -0.17 16 45 H 0.38 -0.26 8.70 -74.06 -0.64 -0.90 16 46 H -0.29 -1.32 7.10 99.48 0.71 -0.62 16 47 H -0.31 -2.60 7.11 99.48 0.71 -1.89 16 48 H 0.14 -0.57 4.38 -2.91 -0.01 -0.58 16 49 H 0.41 0.11 8.12 -92.71 -0.75 -0.64 16 50 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 51 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 52 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 53 H 0.06 -0.06 8.10 -2.38 -0.02 -0.08 16 Total: 0.00 -22.61 416.87 -0.73 -23.34 By element: Atomic # 1 Polarization: -19.56 SS G_CDS: -1.15 Total: -20.71 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.72 Total: 10.17 kcal Atomic # 7 Polarization: 5.54 SS G_CDS: -4.24 Total: 1.29 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -2.09 Total: -15.92 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: 2.04 Total: 1.83 kcal Total: -22.61 -0.73 -23.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_15413834.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.187 kcal (2) G-P(sol) polarization free energy of solvation -22.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds