Wall clock time and date at job start Sun Mar 7 2021 07:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47297 * 2 1 4 4 C 1.34232 * 117.00134 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99943 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99718 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47313 * 299.99718 * 6 4 3 8 8 C 1.52992 * 109.47236 * 60.00384 * 6 4 3 9 9 C 1.53007 * 109.47188 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46632 * 299.99638 * 9 8 6 11 11 H 1.08997 * 109.47123 * 299.99842 * 10 9 8 12 12 C 1.53007 * 109.46632 * 180.02562 * 10 9 8 13 13 N 1.46498 * 109.47017 * 65.00422 * 12 10 9 14 14 C 1.34777 * 119.99576 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00497 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99806 * 179.97438 * 14 13 12 17 17 O 1.42899 * 109.47042 * 179.97438 * 16 14 13 18 18 C 1.35899 * 116.99735 * 179.97438 * 17 16 14 19 19 C 1.38708 * 120.05614 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.02688 * 0.02562 * 19 18 17 21 21 O 1.42903 * 109.47152 * 74.72590 * 20 19 18 22 22 Si 1.86305 * 109.47184 * 194.72062 * 20 19 18 23 23 C 1.38169 * 119.94575 * 179.72759 * 19 18 17 24 24 C 1.38243 * 120.05767 * 0.27557 * 23 19 18 25 25 C 1.38284 * 120.10656 * 359.97438 * 24 23 19 26 26 C 1.38118 * 120.06127 * 359.97438 * 25 24 23 27 27 C 1.52998 * 109.47491 * 60.00463 * 10 9 8 28 28 C 1.53004 * 109.46657 * 180.02562 * 6 4 3 29 29 H 1.09005 * 109.46897 * 300.00306 * 1 2 3 30 30 H 1.08993 * 109.47174 * 60.00192 * 1 2 3 31 31 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47398 * 239.99526 * 2 1 3 33 33 H 1.09007 * 109.47153 * 119.99673 * 2 1 3 34 34 H 1.09004 * 109.47060 * 299.99362 * 8 6 4 35 35 H 1.08997 * 109.47513 * 59.99457 * 8 6 4 36 36 H 1.08998 * 109.46881 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.47237 * 59.99410 * 9 8 6 38 38 H 1.08995 * 109.47250 * 304.99948 * 12 10 9 39 39 H 1.09005 * 109.46838 * 185.00199 * 12 10 9 40 40 H 0.96993 * 120.00250 * 359.97438 * 13 12 10 41 41 H 1.09003 * 109.46971 * 60.00084 * 16 14 13 42 42 H 1.08995 * 109.47222 * 300.00281 * 16 14 13 43 43 H 1.08997 * 109.47198 * 314.72268 * 20 19 18 44 44 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 45 45 H 1.48497 * 110.00233 * 300.00062 * 22 20 19 46 46 H 1.48492 * 109.99800 * 61.32455 * 22 20 19 47 47 H 1.07997 * 119.97114 * 180.25407 * 23 19 18 48 48 H 1.07990 * 119.94622 * 179.97438 * 24 23 19 49 49 H 1.08006 * 119.97066 * 179.97438 * 25 24 23 50 50 H 1.08004 * 120.03344 * 180.02562 * 26 25 24 51 51 H 1.08997 * 109.47138 * 59.98857 * 27 10 9 52 52 H 1.08995 * 109.47713 * 179.97438 * 27 10 9 53 53 H 1.08991 * 109.47761 * 59.99801 * 28 6 4 54 54 H 1.09004 * 109.47153 * 299.99632 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5844 3.4692 -0.8912 8 6 3.4497 3.6846 1.2480 9 6 4.0349 5.0983 1.2477 10 6 5.5628 5.0176 1.2475 11 1 5.8987 4.4855 2.1375 12 6 6.1481 6.4313 1.2478 13 7 5.7958 7.1054 2.4999 14 6 6.2061 8.3696 2.7231 15 8 6.8674 8.9490 1.8878 16 6 5.8433 9.0633 4.0109 17 8 6.3900 10.3835 4.0112 18 6 6.1525 11.1493 5.1085 19 6 6.6531 12.4412 5.1756 20 6 7.4606 12.9975 4.0313 21 8 6.5893 13.3175 2.9447 22 14 8.3491 14.5371 4.5889 23 6 6.4055 13.2198 6.2899 24 6 5.6644 12.7103 7.3398 25 6 5.1687 11.4209 7.2775 26 6 5.4125 10.6389 6.1654 27 6 6.0340 4.2704 -0.0017 28 6 5.4486 2.8572 -0.0023 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.3611 3.7417 1.2484 35 1 3.7859 3.1528 2.1380 36 1 3.6990 5.6308 2.1374 37 1 3.6991 5.6304 0.3577 38 1 5.7424 6.9927 0.4062 39 1 7.2330 6.3754 1.1580 40 1 5.2666 6.6421 3.1679 41 1 6.2491 8.5021 4.8527 42 1 4.7584 9.1188 4.1005 43 1 8.1893 12.2550 3.7061 44 1 7.0420 13.6812 2.1715 45 1 7.3665 15.5574 5.0347 46 1 9.2820 14.2118 5.6974 47 1 6.7916 14.2271 6.3408 48 1 5.4724 13.3202 8.2100 49 1 4.5903 11.0249 8.0992 50 1 5.0247 9.6320 6.1171 51 1 5.6980 4.8025 -0.8917 52 1 7.1224 4.2133 -0.0021 53 1 5.7839 2.3250 -0.8924 54 1 5.7852 2.3252 0.8875 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_2989392.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:23 Heat of formation + Delta-G solvation = -174.722298 kcal Electronic energy + Delta-G solvation = -34101.257983 eV Core-core repulsion = 29390.603451 eV Total energy + Delta-G solvation = -4710.654532 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.85369 -41.64241 -40.71637 -39.50935 -38.49690 -37.73186 -37.48947 -35.96438 -33.26126 -32.94074 -32.35919 -31.75663 -31.34202 -29.68758 -27.21529 -26.67824 -24.70287 -23.80623 -23.66831 -23.08704 -22.54666 -21.67757 -21.55306 -20.70903 -19.39783 -18.74083 -18.44173 -18.38882 -17.69355 -17.57965 -17.45061 -17.34726 -16.91525 -16.62759 -16.23511 -15.82483 -15.65593 -15.38309 -15.25106 -15.06399 -15.01187 -14.85441 -14.66293 -14.60960 -14.09372 -13.94452 -13.80141 -13.69873 -13.62104 -13.46404 -13.25002 -13.04434 -13.00378 -12.89957 -12.73805 -12.57200 -12.26515 -12.18940 -12.10833 -12.01821 -11.88166 -11.80947 -11.59075 -11.45363 -11.23653 -11.12457 -10.96716 -10.26205 -10.18841 -10.10281 -9.32466 -4.96840 0.09064 0.28776 1.09504 1.27944 1.44607 1.46897 1.61202 1.63567 1.90176 2.54201 2.58625 3.41636 3.44249 3.53966 3.59394 3.66426 3.68861 3.84882 3.86816 3.94358 3.95772 3.96935 4.02631 4.04743 4.07176 4.14734 4.17028 4.23393 4.27109 4.30913 4.38678 4.40861 4.45653 4.50463 4.54509 4.65339 4.72765 4.81233 4.84006 4.85764 4.87638 4.96604 5.08292 5.10746 5.12099 5.16327 5.17066 5.22024 5.23801 5.29377 5.34753 5.37652 5.43438 5.50523 5.61798 6.20381 6.44876 6.65449 6.86964 7.11971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.105 4.105 9 C -0.110 4.110 10 C -0.091 4.091 11 H 0.090 0.910 12 C 0.127 3.873 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.569 6.569 16 C 0.033 3.967 17 O -0.307 6.307 18 C 0.134 3.866 19 C -0.137 4.137 20 C -0.078 4.078 21 O -0.563 6.563 22 Si 0.780 3.220 23 C -0.105 4.105 24 C -0.158 4.158 25 C -0.073 4.073 26 C -0.207 4.207 27 C -0.108 4.108 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.419 0.581 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.065 0.935 44 H 0.397 0.603 45 H -0.281 1.281 46 H -0.286 1.286 47 H 0.124 0.876 48 H 0.148 0.852 49 H 0.161 0.839 50 H 0.165 0.835 51 H 0.076 0.924 52 H 0.075 0.925 53 H 0.063 0.937 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -2.052 2.637 5.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.004 3.996 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.448 6.448 16 C -0.045 4.045 17 O -0.220 6.220 18 C 0.088 3.912 19 C -0.138 4.138 20 C -0.187 4.187 21 O -0.372 6.372 22 Si 0.684 3.316 23 C -0.122 4.122 24 C -0.176 4.176 25 C -0.090 4.090 26 C -0.226 4.226 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.257 0.743 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.247 0.753 45 H -0.209 1.209 46 H -0.213 1.213 47 H 0.142 0.858 48 H 0.165 0.835 49 H 0.179 0.821 50 H 0.182 0.818 51 H 0.095 0.905 52 H 0.094 0.906 53 H 0.082 0.918 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.493 -1.615 2.908 4.824 hybrid contribution -0.366 -1.242 0.254 1.319 sum -3.859 -2.857 3.162 5.749 Atomic orbital electron populations 1.21819 0.90646 1.04227 1.03781 1.23230 0.96943 0.79503 1.02320 1.86519 1.24378 1.33295 1.83486 1.24447 0.80480 0.93475 0.70898 1.90669 1.61171 1.44599 1.46875 1.21271 0.96588 0.88089 1.03659 0.85804 1.21501 1.01772 0.95863 0.95074 1.21619 0.93577 0.95625 1.03924 1.21386 0.96134 0.93381 1.00076 0.89192 1.21411 0.99931 0.92612 0.85661 1.45682 1.55753 1.13119 1.21677 1.20407 0.79391 0.82355 0.87972 1.90762 1.39927 1.66195 1.47879 1.22768 1.01906 0.82575 0.97225 1.86165 1.72410 1.25447 1.37962 1.18982 0.95112 0.90560 0.86556 1.19054 1.04457 0.93211 0.97073 1.24838 0.95832 1.08943 0.89047 1.86441 1.37083 1.86484 1.27190 0.94170 0.78122 0.75600 0.83702 1.21013 0.98641 0.98737 0.93847 1.21367 0.99674 0.97299 0.99308 1.21422 0.96836 0.93070 0.97703 1.21685 1.03503 1.03065 0.94320 1.21471 1.01128 0.93957 0.98000 1.21369 0.91574 0.97723 1.03016 0.91086 0.91290 0.88674 0.91693 0.91483 0.89870 0.91264 0.89627 0.90845 0.91900 0.92209 0.74254 0.85891 0.86089 0.91707 0.75342 1.20879 1.21312 0.85824 0.83459 0.82096 0.81796 0.90549 0.90637 0.91834 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.62 10.29 71.98 0.74 1.36 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.95 10.12 -51.44 -0.52 -1.47 16 4 C 0.46 1.69 7.26 71.23 0.52 2.21 16 5 O -0.54 -5.71 15.73 21.95 0.35 -5.37 16 6 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 7 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 8 C -0.10 0.73 5.14 30.59 0.16 0.89 16 9 C -0.11 1.05 5.08 30.60 0.16 1.20 16 10 C -0.09 0.74 2.23 -10.79 -0.02 0.72 16 11 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 12 C 0.13 -0.50 5.07 86.38 0.44 -0.06 16 13 N -0.71 3.66 5.28 -463.05 -2.45 1.21 16 14 C 0.51 1.49 7.91 87.66 0.69 2.18 16 15 O -0.57 -8.26 16.50 16.02 0.26 -7.99 16 16 C 0.03 -0.05 5.22 71.24 0.37 0.32 16 17 O -0.31 -2.64 9.01 -73.38 -0.66 -3.30 16 18 C 0.13 1.00 6.66 22.51 0.15 1.15 16 19 C -0.14 -1.32 5.30 -19.77 -0.10 -1.43 16 20 C -0.08 -0.58 2.37 71.24 0.17 -0.41 16 21 O -0.56 -4.71 12.86 -148.98 -1.92 -6.62 16 22 Si 0.78 1.77 30.20 68.60 2.07 3.84 16 23 C -0.10 -0.77 8.66 22.25 0.19 -0.58 16 24 C -0.16 -0.44 10.04 22.28 0.22 -0.22 16 25 C -0.07 0.03 10.04 22.25 0.22 0.25 16 26 C -0.21 -0.13 9.04 22.37 0.20 0.07 16 27 C -0.11 0.66 5.20 30.58 0.16 0.82 16 28 C -0.10 0.27 4.49 30.58 0.14 0.41 16 29 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.06 0.10 8.13 -2.38 -0.02 0.08 16 33 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.08 -0.58 8.11 -2.38 -0.02 -0.60 16 35 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.09 -1.05 7.18 -2.39 -0.02 -1.06 16 37 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.42 -5.24 7.65 -92.71 -0.71 -5.95 16 41 H 0.12 -1.01 7.65 -2.39 -0.02 -1.03 16 42 H 0.12 -0.91 7.67 -2.39 -0.02 -0.93 16 43 H 0.06 0.52 7.83 -2.39 -0.02 0.50 16 44 H 0.40 -0.62 8.74 -74.06 -0.65 -1.27 16 45 H -0.28 -1.99 6.75 99.48 0.67 -1.32 16 46 H -0.29 -2.02 7.11 99.48 0.71 -1.31 16 47 H 0.12 0.82 4.90 -2.91 -0.01 0.81 16 48 H 0.15 -0.28 8.06 -2.92 -0.02 -0.30 16 49 H 0.16 -1.11 8.06 -2.91 -0.02 -1.14 16 50 H 0.16 -1.17 6.30 -2.91 -0.02 -1.19 16 51 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 52 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 53 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 54 H 0.06 -0.04 8.10 -2.38 -0.02 -0.06 16 Total: 0.00 -31.53 436.54 1.51 -30.02 By element: Atomic # 1 Polarization: -19.45 SS G_CDS: -0.44 Total: -19.89 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 4.82 Total: 9.58 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: -2.45 Total: 1.21 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -2.49 Total: -24.75 kcal Atomic # 14 Polarization: 1.77 SS G_CDS: 2.07 Total: 3.84 kcal Total: -31.53 1.51 -30.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_2989392.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.706 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds