Wall clock time and date at job start Sun Mar 7 2021 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.46883 * 2 1 4 4 C 1.34230 * 117.00072 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99870 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00360 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.46983 * 299.99652 * 6 4 3 8 8 C 1.53004 * 109.47037 * 59.99519 * 6 4 3 9 9 C 1.52999 * 109.46735 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47163 * 299.99928 * 9 8 6 11 11 H 1.09001 * 109.47508 * 300.00023 * 10 9 8 12 12 C 1.53004 * 109.47019 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47282 * 65.00247 * 12 10 9 14 14 C 1.34776 * 120.00304 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00062 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.47125 * 179.97438 * 16 14 13 18 18 C 1.35895 * 117.00022 * 179.97438 * 17 16 14 19 19 C 1.38737 * 120.05312 * 179.97438 * 18 17 16 20 20 C 1.38141 * 119.94079 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05690 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.94114 * 180.02562 * 21 20 19 23 23 O 1.42903 * 109.47186 * 65.00484 * 22 21 20 24 24 Si 1.86302 * 109.46768 * 185.00163 * 22 21 20 25 25 C 1.38263 * 120.11156 * 0.27879 * 21 20 19 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 21 20 27 27 C 1.53003 * 109.46906 * 60.00563 * 10 9 8 28 28 C 1.52995 * 109.47314 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47568 * 300.00037 * 1 2 3 31 31 H 1.08994 * 109.46987 * 60.00403 * 1 2 3 32 32 H 1.08993 * 109.47391 * 239.99525 * 2 1 3 33 33 H 1.09010 * 109.46764 * 119.99402 * 2 1 3 34 34 H 1.08994 * 109.47432 * 300.00419 * 8 6 4 35 35 H 1.08998 * 109.46672 * 60.00609 * 8 6 4 36 36 H 1.09006 * 109.46787 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.47784 * 60.00200 * 9 8 6 38 38 H 1.09005 * 109.46949 * 305.00032 * 12 10 9 39 39 H 1.08999 * 109.46962 * 185.00092 * 12 10 9 40 40 H 0.96999 * 119.99811 * 359.97438 * 13 12 10 41 41 H 1.08997 * 109.47602 * 59.99734 * 16 14 13 42 42 H 1.08999 * 109.47088 * 299.99691 * 16 14 13 43 43 H 1.07994 * 120.02884 * 359.96129 * 19 18 17 44 44 H 1.07997 * 119.97174 * 180.02562 * 20 19 18 45 45 H 1.08992 * 109.47155 * 305.00081 * 22 21 20 46 46 H 0.96698 * 113.99763 * 59.99746 * 23 22 21 47 47 H 1.48504 * 109.99775 * 180.02562 * 24 22 21 48 48 H 1.48498 * 110.00038 * 301.31999 * 24 22 21 49 49 H 1.08001 * 119.97275 * 179.72293 * 25 21 20 50 50 H 1.07992 * 120.02923 * 180.27343 * 26 25 21 51 51 H 1.09003 * 109.46951 * 59.99985 * 27 10 9 52 52 H 1.09003 * 109.46986 * 179.97438 * 27 10 9 53 53 H 1.09007 * 109.47129 * 59.99944 * 28 6 4 54 54 H 1.08998 * 109.47498 * 300.00066 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5844 3.4693 -0.8913 8 6 3.4495 3.6848 1.2480 9 6 4.0338 5.0988 1.2470 10 6 5.5617 5.0192 1.2463 11 1 5.8984 4.4877 2.1363 12 6 6.1461 6.4333 1.2459 13 7 5.7937 7.1076 2.4978 14 6 6.2033 8.3722 2.7205 15 8 6.8639 8.9518 1.8847 16 6 5.8413 9.0656 4.0086 17 8 6.3869 10.3864 4.0082 18 6 6.1501 11.1521 5.1057 19 6 6.6507 12.4443 5.1725 20 6 6.4081 13.2207 6.2890 21 6 5.6667 12.7113 7.3391 22 6 5.4032 13.5609 8.5556 23 8 4.5924 14.6792 8.1891 24 14 4.5163 12.5458 9.8416 25 6 5.1712 11.4220 7.2771 26 6 5.4061 10.6434 6.1604 27 6 6.0329 4.2719 -0.0030 28 6 5.4485 2.8574 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3610 3.7418 1.2484 35 1 3.7858 3.1529 2.1380 36 1 3.6984 5.6311 2.1372 37 1 3.6972 5.6305 0.3570 38 1 5.7396 6.9942 0.4042 39 1 7.2309 6.3781 1.1558 40 1 5.2651 6.6442 3.1661 41 1 6.2484 8.5050 4.8500 42 1 4.7565 9.1203 4.0994 43 1 7.2297 12.8426 4.3525 44 1 6.7972 14.2268 6.3414 45 1 6.3498 13.9163 8.9626 46 1 3.7327 14.4370 7.8185 47 1 4.2500 13.3724 11.0462 48 1 3.2388 12.0289 9.2883 49 1 4.5961 11.0248 8.1005 50 1 5.0151 9.6380 6.1106 51 1 5.6963 4.8036 -0.8930 52 1 7.1215 4.2156 -0.0037 53 1 5.7846 2.3248 -0.8908 54 1 5.7845 2.3257 0.8892 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_2989410.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:27 Heat of formation + Delta-G solvation = -177.723952 kcal Electronic energy + Delta-G solvation = -33425.013414 eV Core-core repulsion = 28714.228721 eV Total energy + Delta-G solvation = -4710.784693 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.83887 -41.52850 -40.67116 -39.54411 -38.93750 -37.73028 -37.23124 -35.94919 -33.23288 -32.50073 -32.19630 -31.75001 -31.70696 -29.81392 -27.27895 -26.15822 -24.67618 -23.95637 -23.74267 -23.17497 -22.35579 -21.67041 -21.53822 -20.70362 -19.48304 -18.73165 -18.53849 -18.17043 -17.68417 -17.55959 -17.44265 -17.07127 -16.79366 -16.27638 -16.23364 -16.01159 -15.69127 -15.53518 -15.24077 -15.06535 -14.92463 -14.72074 -14.63495 -14.59653 -14.35145 -13.91269 -13.75169 -13.68662 -13.55114 -13.49355 -13.35621 -13.22820 -12.98942 -12.88600 -12.56475 -12.29967 -12.23655 -12.10928 -12.10155 -12.04210 -11.86308 -11.59464 -11.58188 -11.44141 -11.22153 -11.10926 -10.94952 -10.56437 -10.17036 -10.02239 -9.22636 -4.89257 0.28800 0.32535 1.10514 1.35074 1.47370 1.52089 1.61806 1.64495 1.99742 2.63298 2.66203 3.42899 3.46537 3.55265 3.60702 3.67770 3.75819 3.84466 3.86713 3.95254 3.95996 3.98574 4.03405 4.06000 4.12181 4.16696 4.27969 4.31797 4.32417 4.39988 4.44372 4.47269 4.51675 4.56431 4.66512 4.70818 4.74739 4.82309 4.85368 4.88375 4.98158 4.98898 5.09999 5.11780 5.13186 5.17459 5.18627 5.23369 5.27137 5.31152 5.36424 5.44441 5.51235 5.52157 5.71289 6.28266 6.49045 6.52205 6.66418 7.15131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.105 4.105 9 C -0.110 4.110 10 C -0.091 4.091 11 H 0.091 0.909 12 C 0.126 3.874 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.576 6.576 16 C 0.036 3.964 17 O -0.320 6.320 18 C 0.122 3.878 19 C -0.167 4.167 20 C -0.060 4.060 21 C -0.158 4.158 22 C -0.083 4.083 23 O -0.552 6.552 24 Si 0.772 3.228 25 C -0.077 4.077 26 C -0.200 4.200 27 C -0.108 4.108 28 C -0.099 4.099 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.421 0.579 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.385 0.615 47 H -0.308 1.308 48 H -0.276 1.276 49 H 0.152 0.848 50 H 0.165 0.835 51 H 0.075 0.925 52 H 0.074 0.926 53 H 0.062 0.938 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -5.186 3.765 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.110 4.110 11 H 0.109 0.891 12 C 0.003 3.997 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.455 6.455 16 C -0.042 4.042 17 O -0.234 6.234 18 C 0.076 3.924 19 C -0.186 4.186 20 C -0.078 4.078 21 C -0.159 4.159 22 C -0.191 4.191 23 O -0.360 6.360 24 Si 0.678 3.322 25 C -0.094 4.094 26 C -0.218 4.218 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.259 0.741 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.138 0.862 46 H 0.235 0.765 47 H -0.237 1.237 48 H -0.202 1.202 49 H 0.169 0.831 50 H 0.183 0.817 51 H 0.094 0.906 52 H 0.093 0.907 53 H 0.080 0.920 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.559 -4.828 3.670 7.587 hybrid contribution -0.684 0.122 -0.818 1.073 sum -5.243 -4.706 2.852 7.600 Atomic orbital electron populations 1.21820 0.90652 1.04218 1.03782 1.23227 0.96936 0.79515 1.02314 1.86517 1.24384 1.33275 1.83488 1.24459 0.80476 0.93492 0.70897 1.90671 1.61171 1.44615 1.46875 1.21279 0.96569 0.88077 1.03703 0.85868 1.21505 1.01778 0.95890 0.95039 1.21621 0.93530 0.95595 1.03964 1.21389 0.96171 0.93368 1.00041 0.89070 1.21402 0.99890 0.92636 0.85774 1.45683 1.55735 1.13138 1.21596 1.20547 0.79245 0.82354 0.88160 1.90773 1.40192 1.66365 1.48143 1.22765 1.02099 0.82407 0.96918 1.86131 1.72946 1.25810 1.38478 1.19218 0.95554 0.91165 0.86425 1.20623 1.04749 0.92779 1.00410 1.20918 0.95808 0.99419 0.91675 1.20274 1.02106 0.95895 0.97605 1.25243 1.00907 0.92717 1.00255 1.86575 1.32714 1.32615 1.84083 0.94099 0.81337 0.82390 0.74420 1.21098 0.97771 0.92815 0.97756 1.21496 1.03459 1.02922 0.93910 1.21493 1.01106 0.93950 0.98059 1.21385 0.91592 0.97707 1.02999 0.88698 0.91049 0.91316 0.91738 0.91457 0.89871 0.91182 0.89427 0.90915 0.91984 0.92314 0.74113 0.85471 0.85611 0.85634 0.84907 0.86203 0.76537 1.23690 1.20237 0.83069 0.81718 0.90636 0.90704 0.91954 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 10.29 71.98 0.74 1.42 16 2 C 0.05 0.01 6.19 71.98 0.45 0.46 16 3 O -0.36 -0.78 10.12 -51.41 -0.52 -1.30 16 4 C 0.46 1.47 7.26 71.23 0.52 1.99 16 5 O -0.54 -5.49 15.73 21.94 0.35 -5.14 16 6 C -0.08 0.30 2.63 -11.54 -0.03 0.27 16 7 H 0.12 -0.78 8.14 -2.38 -0.02 -0.80 16 8 C -0.10 0.82 5.14 30.60 0.16 0.98 16 9 C -0.11 1.16 5.08 30.60 0.16 1.31 16 10 C -0.09 0.82 2.22 -10.79 -0.02 0.80 16 11 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 12 C 0.13 -0.61 5.07 86.38 0.44 -0.17 16 13 N -0.71 4.79 5.28 -463.06 -2.45 2.34 16 14 C 0.51 0.51 7.91 87.66 0.69 1.20 16 15 O -0.58 -7.72 16.50 15.99 0.26 -7.46 16 16 C 0.04 -0.17 5.22 71.23 0.37 0.20 16 17 O -0.32 -1.56 9.67 -73.33 -0.71 -2.27 16 18 C 0.12 0.30 6.69 22.51 0.15 0.45 16 19 C -0.17 -0.71 9.99 22.37 0.22 -0.48 16 20 C -0.06 -0.13 9.68 22.25 0.22 0.08 16 21 C -0.16 0.08 5.35 -19.85 -0.11 -0.03 16 22 C -0.08 0.09 2.80 71.24 0.20 0.29 16 23 O -0.55 -1.41 12.83 -148.98 -1.91 -3.32 16 24 Si 0.77 -2.80 29.87 68.60 2.05 -0.75 16 25 C -0.08 0.28 8.66 22.25 0.19 0.47 16 26 C -0.20 0.73 9.04 22.37 0.20 0.93 16 27 C -0.11 0.72 5.21 30.61 0.16 0.88 16 28 C -0.10 0.32 4.49 30.61 0.14 0.45 16 29 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 33 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 34 H 0.08 -0.65 8.11 -2.39 -0.02 -0.67 16 35 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.09 -1.19 7.18 -2.38 -0.02 -1.21 16 37 H 0.07 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.42 -6.06 7.65 -92.71 -0.71 -6.77 16 41 H 0.13 -1.46 7.67 -2.39 -0.02 -1.48 16 42 H 0.13 -1.44 7.66 -2.39 -0.02 -1.46 16 43 H 0.13 0.62 8.06 -2.91 -0.02 0.59 16 44 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 45 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 46 H 0.39 -1.24 8.70 -74.06 -0.64 -1.88 16 47 H -0.31 -1.52 7.11 99.48 0.71 -0.82 16 48 H -0.28 0.31 7.01 99.48 0.70 1.01 16 49 H 0.15 -1.26 4.84 -2.91 -0.01 -1.28 16 50 H 0.17 -1.84 6.30 -2.91 -0.02 -1.86 16 51 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 52 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 53 H 0.06 -0.02 8.10 -2.38 -0.02 -0.04 16 54 H 0.06 -0.08 8.10 -2.39 -0.02 -0.10 16 Total: 0.00 -29.58 437.24 1.50 -28.08 By element: Atomic # 1 Polarization: -21.25 SS G_CDS: -0.41 Total: -21.66 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 4.84 Total: 11.48 kcal Atomic # 7 Polarization: 4.79 SS G_CDS: -2.45 Total: 2.34 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -2.53 Total: -19.49 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.05 Total: -0.75 kcal Total: -29.58 1.50 -28.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_2989410.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.639 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds