Wall clock time and date at job start Sun Mar 7 2021 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.46883 * 2 1 4 4 C 1.34230 * 117.00072 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99870 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00360 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.46983 * 299.99652 * 6 4 3 8 8 C 1.53004 * 109.47037 * 59.99519 * 6 4 3 9 9 C 1.52999 * 109.46735 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47163 * 299.99928 * 9 8 6 11 11 H 1.09001 * 109.47508 * 300.00023 * 10 9 8 12 12 C 1.53004 * 109.47019 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47282 * 65.00247 * 12 10 9 14 14 C 1.34776 * 120.00304 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00062 * 180.02562 * 14 13 12 17 17 F 1.39895 * 109.47422 * 59.99833 * 16 14 13 18 18 F 1.39902 * 109.47025 * 299.99673 * 16 14 13 19 19 O 1.42905 * 109.47125 * 179.97438 * 16 14 13 20 20 C 1.35895 * 117.00022 * 179.97438 * 19 16 14 21 21 C 1.38737 * 120.05312 * 179.97438 * 20 19 16 22 22 C 1.38141 * 119.94079 * 179.97438 * 21 20 19 23 23 C 1.38269 * 120.05690 * 359.97438 * 22 21 20 24 24 C 1.50706 * 119.94114 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.47186 * 65.00484 * 24 23 22 26 26 Si 1.86302 * 109.46768 * 185.00163 * 24 23 22 27 27 C 1.38263 * 120.11156 * 0.27879 * 23 22 21 28 28 C 1.38143 * 120.05579 * 359.44512 * 27 23 22 29 29 C 1.53003 * 109.46906 * 60.00563 * 10 9 8 30 30 C 1.52995 * 109.47314 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47568 * 300.00037 * 1 2 3 33 33 H 1.08994 * 109.46987 * 60.00403 * 1 2 3 34 34 H 1.08993 * 109.47391 * 239.99525 * 2 1 3 35 35 H 1.09010 * 109.46764 * 119.99402 * 2 1 3 36 36 H 1.08994 * 109.47432 * 300.00419 * 8 6 4 37 37 H 1.08998 * 109.46672 * 60.00609 * 8 6 4 38 38 H 1.09006 * 109.46787 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.47784 * 60.00200 * 9 8 6 40 40 H 1.09005 * 109.46949 * 305.00032 * 12 10 9 41 41 H 1.08999 * 109.46962 * 185.00092 * 12 10 9 42 42 H 0.96999 * 119.99811 * 359.97438 * 13 12 10 43 43 H 1.07994 * 120.02884 * 359.96129 * 21 20 19 44 44 H 1.07997 * 119.97174 * 180.02562 * 22 21 20 45 45 H 1.08992 * 109.47155 * 305.00081 * 24 23 22 46 46 H 0.96699 * 114.00071 * 179.97438 * 25 24 23 47 47 H 1.48503 * 110.00170 * 300.00296 * 26 24 23 48 48 H 1.48497 * 109.99882 * 61.31949 * 26 24 23 49 49 H 1.08001 * 119.97275 * 179.72293 * 27 23 22 50 50 H 1.07992 * 120.02923 * 180.27343 * 28 27 23 51 51 H 1.09003 * 109.46951 * 59.99985 * 29 10 9 52 52 H 1.09003 * 109.46986 * 179.97438 * 29 10 9 53 53 H 1.09007 * 109.47129 * 59.99944 * 30 6 4 54 54 H 1.08998 * 109.47498 * 300.00066 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5844 3.4693 -0.8913 8 6 3.4495 3.6848 1.2480 9 6 4.0338 5.0988 1.2470 10 6 5.5617 5.0192 1.2463 11 1 5.8984 4.4877 2.1363 12 6 6.1461 6.4333 1.2459 13 7 5.7937 7.1076 2.4978 14 6 6.2033 8.3722 2.7205 15 8 6.8639 8.9518 1.8847 16 6 5.8413 9.0656 4.0086 17 9 6.3639 8.3460 5.0885 18 9 4.4489 9.1358 4.1251 19 8 6.3869 10.3864 4.0082 20 6 6.1501 11.1521 5.1057 21 6 6.6507 12.4443 5.1725 22 6 6.4081 13.2207 6.2890 23 6 5.6667 12.7113 7.3391 24 6 5.4032 13.5609 8.5556 25 8 4.5924 14.6792 8.1891 26 14 4.5163 12.5458 9.8416 27 6 5.1712 11.4220 7.2771 28 6 5.4061 10.6434 6.1604 29 6 6.0329 4.2719 -0.0030 30 6 5.4485 2.8574 -0.0010 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.3610 3.7418 1.2484 37 1 3.7858 3.1529 2.1380 38 1 3.6984 5.6311 2.1372 39 1 3.6972 5.6305 0.3570 40 1 5.7396 6.9942 0.4042 41 1 7.2309 6.3781 1.1558 42 1 5.2651 6.6442 3.1661 43 1 7.2297 12.8426 4.3525 44 1 6.7972 14.2268 6.3414 45 1 6.3498 13.9163 8.9626 46 1 4.3823 15.2705 8.9248 47 1 3.2239 12.0552 9.2989 48 1 5.3624 11.3974 10.2544 49 1 4.5961 11.0248 8.1005 50 1 5.0151 9.6380 6.1106 51 1 5.6963 4.8036 -0.8930 52 1 7.1215 4.2156 -0.0037 53 1 5.7846 2.3248 -0.8908 54 1 5.7845 2.3257 0.8892 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_4549640.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:17:15 Heat of formation + Delta-G solvation = -267.392956 kcal Electronic energy + Delta-G solvation = -39722.408509 eV Core-core repulsion = 34068.827525 eV Total energy + Delta-G solvation = -5653.580984 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.178 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.98958 -48.96276 -41.87403 -41.53707 -41.18559 -39.65133 -39.22372 -37.77689 -37.30740 -36.31758 -33.31824 -32.64042 -32.40305 -32.18608 -31.77626 -29.52867 -27.46433 -26.20203 -24.90677 -24.40711 -23.82667 -23.30184 -22.68023 -22.30652 -21.69800 -20.91152 -20.62350 -19.91435 -19.78963 -18.76038 -18.39039 -18.19138 -17.70622 -17.61138 -17.46239 -17.09679 -16.72906 -16.59663 -16.37037 -16.13060 -15.83997 -15.82400 -15.50395 -15.35007 -15.29817 -15.21315 -15.09693 -14.91990 -14.81422 -14.67029 -14.53480 -14.41083 -14.01995 -13.97685 -13.74589 -13.72734 -13.59772 -13.29759 -13.24983 -13.05044 -12.93613 -12.60122 -12.58611 -12.32665 -12.21168 -12.14178 -12.00209 -11.94883 -11.69936 -11.60843 -11.47806 -11.21370 -11.15823 -10.56917 -10.35709 -10.31130 -9.69280 -4.96777 -0.11614 -0.00816 0.39895 0.58594 1.07964 1.28376 1.58683 1.62254 1.62315 1.93308 1.95064 2.30535 2.72606 3.13455 3.28274 3.36163 3.41823 3.51976 3.53956 3.62429 3.76065 3.83610 3.91549 3.93688 3.93958 4.00788 4.08280 4.09162 4.23914 4.25064 4.28894 4.34817 4.38591 4.46002 4.47385 4.57299 4.59260 4.67557 4.77200 4.77973 4.80048 4.82972 4.85876 4.88311 4.91284 5.05215 5.08951 5.09812 5.16345 5.18726 5.20995 5.25857 5.29466 5.41157 5.45929 5.69172 5.78436 6.39420 6.63890 6.91861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.127 0.873 8 C -0.106 4.106 9 C -0.114 4.114 10 C -0.095 4.095 11 H 0.090 0.910 12 C 0.121 3.879 13 N -0.683 5.683 14 C 0.517 3.483 15 O -0.506 6.506 16 C 0.430 3.570 17 F -0.173 7.173 18 F -0.173 7.173 19 O -0.301 6.301 20 C 0.087 3.913 21 C -0.130 4.130 22 C -0.053 4.053 23 C -0.109 4.109 24 C -0.073 4.073 25 O -0.563 6.563 26 Si 0.769 3.231 27 C -0.100 4.100 28 C -0.194 4.194 29 C -0.105 4.105 30 C -0.100 4.100 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.421 0.579 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.405 0.595 47 H -0.297 1.297 48 H -0.289 1.289 49 H 0.127 0.873 50 H 0.138 0.862 51 H 0.082 0.918 52 H 0.080 0.920 53 H 0.065 0.935 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 1.282 3.665 4.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.306 3.694 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.145 0.855 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.114 4.114 11 H 0.108 0.892 12 C 0.000 4.000 13 N -0.337 5.337 14 C 0.295 3.705 15 O -0.379 6.379 16 C 0.353 3.647 17 F -0.155 7.155 18 F -0.154 7.154 19 O -0.218 6.218 20 C 0.044 3.956 21 C -0.148 4.148 22 C -0.071 4.071 23 C -0.110 4.110 24 C -0.183 4.183 25 O -0.373 6.373 26 Si 0.676 3.324 27 C -0.118 4.118 28 C -0.212 4.212 29 C -0.143 4.143 30 C -0.138 4.138 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.260 0.740 43 H 0.173 0.827 44 H 0.181 0.819 45 H 0.120 0.880 46 H 0.256 0.744 47 H -0.225 1.225 48 H -0.216 1.216 49 H 0.144 0.856 50 H 0.156 0.844 51 H 0.100 0.900 52 H 0.099 0.901 53 H 0.084 0.916 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.480 0.346 2.537 3.564 hybrid contribution -0.162 -1.108 0.041 1.121 sum -2.641 -0.762 2.578 3.769 Atomic orbital electron populations 1.21821 0.90677 1.04233 1.03758 1.23227 0.96927 0.79506 1.02324 1.86518 1.24432 1.33295 1.83486 1.24466 0.80470 0.93525 0.70912 1.90671 1.61150 1.44603 1.46854 1.21280 0.96718 0.88027 1.03532 0.85510 1.21492 1.01786 0.95808 0.95224 1.21661 0.93741 0.95800 1.03951 1.21446 0.96072 0.93178 1.00665 0.89159 1.21798 1.01357 0.92784 0.84106 1.45818 1.53698 1.11507 1.22650 1.19266 0.82106 0.83773 0.85384 1.90862 1.37655 1.65136 1.44294 1.21948 0.75062 0.81692 0.86038 1.93189 1.86239 1.78039 1.58024 1.93192 1.29992 1.95952 1.96305 1.86645 1.72029 1.23126 1.39976 1.19190 0.98324 0.92310 0.85779 1.20831 1.02511 0.90556 1.00898 1.21175 0.95178 1.00209 0.90560 1.19792 0.99641 0.93976 0.97564 1.24724 1.00669 0.93752 0.99185 1.86443 1.71601 1.38300 1.40945 0.94419 0.76287 0.79627 0.82058 1.20849 0.99073 0.94557 0.97311 1.21501 1.02980 1.02053 0.94675 1.21480 1.01416 0.93756 0.97642 1.21398 0.91432 0.97844 1.03110 0.88655 0.91186 0.91240 0.91596 0.91557 0.89952 0.91476 0.90327 0.90123 0.89894 0.90200 0.74032 0.82670 0.81907 0.88022 0.74358 1.22550 1.21643 0.85614 0.84398 0.89954 0.90122 0.91575 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 10.29 71.98 0.74 1.29 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.08 10.12 -51.41 -0.52 -1.60 16 4 C 0.46 1.74 7.26 71.23 0.52 2.26 16 5 O -0.54 -5.74 15.73 21.94 0.35 -5.40 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 7 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 8 C -0.11 0.68 5.14 30.60 0.16 0.83 16 9 C -0.11 1.04 5.08 30.60 0.16 1.20 16 10 C -0.09 0.83 2.22 -10.79 -0.02 0.81 16 11 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 12 C 0.12 -0.69 5.07 86.38 0.44 -0.25 16 13 N -0.68 2.38 5.28 -463.06 -2.45 -0.06 16 14 C 0.52 2.32 7.34 87.66 0.64 2.97 16 15 O -0.51 -5.84 16.50 15.99 0.26 -5.58 16 16 C 0.43 2.45 2.05 71.23 0.15 2.60 16 17 F -0.17 -0.78 15.30 44.97 0.69 -0.09 16 18 F -0.17 -0.77 15.29 44.97 0.69 -0.08 16 19 O -0.30 -3.06 9.60 -73.33 -0.70 -3.76 16 20 C 0.09 0.78 6.48 22.51 0.15 0.93 16 21 C -0.13 -0.75 9.99 22.37 0.22 -0.53 16 22 C -0.05 -0.19 9.68 22.25 0.22 0.02 16 23 C -0.11 -0.54 5.39 -19.85 -0.11 -0.64 16 24 C -0.07 0.10 2.79 71.24 0.20 0.30 16 25 O -0.56 0.73 12.81 -148.98 -1.91 -1.17 16 26 Si 0.77 -1.66 29.84 68.60 2.05 0.39 16 27 C -0.10 -0.72 8.66 22.25 0.19 -0.53 16 28 C -0.19 -1.58 8.26 22.37 0.18 -1.40 16 29 C -0.11 0.81 5.21 30.61 0.16 0.97 16 30 C -0.10 0.34 4.49 30.61 0.14 0.48 16 31 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 35 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 36 H 0.08 -0.50 8.11 -2.39 -0.02 -0.52 16 37 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.08 -0.82 7.18 -2.38 -0.02 -0.83 16 39 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.42 -3.47 7.65 -92.71 -0.71 -4.18 16 43 H 0.16 0.38 8.06 -2.91 -0.02 0.35 16 44 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 46 H 0.40 -4.83 8.74 -74.06 -0.65 -5.48 16 47 H -0.30 -1.65 7.05 99.48 0.70 -0.95 16 48 H -0.29 -1.01 7.11 99.48 0.71 -0.30 16 49 H 0.13 0.74 4.86 -2.91 -0.01 0.72 16 50 H 0.14 0.87 5.10 -2.91 -0.01 0.86 16 51 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 52 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 53 H 0.07 -0.06 8.10 -2.38 -0.02 -0.08 16 54 H 0.06 -0.06 8.10 -2.39 -0.02 -0.08 16 Total: 0.00 -25.41 446.59 2.62 -22.79 By element: Atomic # 1 Polarization: -17.11 SS G_CDS: -0.37 Total: -17.48 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.54 Total: 12.04 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -2.45 Total: -0.06 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -2.52 Total: -17.51 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 1.38 Total: -0.17 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.05 Total: 0.39 kcal Total: -25.41 2.62 -22.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_4549640.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.605 kcal (2) G-P(sol) polarization free energy of solvation -25.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds