Wall clock time and date at job start Sun Mar 7 2021 07:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 8 8 C 1.52999 * 109.47581 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47606 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.46630 * 299.99508 * 9 8 6 11 11 H 1.09000 * 109.47766 * 299.99657 * 10 9 8 12 12 C 1.53007 * 109.47152 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47350 * 175.00203 * 12 10 9 14 14 C 1.34777 * 119.99731 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00295 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99583 * 179.97438 * 14 13 12 17 17 O 1.42899 * 109.46803 * 179.97438 * 16 14 13 18 18 C 1.35901 * 116.99723 * 180.02562 * 17 16 14 19 19 C 1.38708 * 120.05385 * 179.72883 * 18 17 16 20 20 C 1.38172 * 119.94373 * 179.67593 * 19 18 17 21 21 C 1.50695 * 119.97488 * 180.32055 * 20 19 18 22 22 O 1.42903 * 109.47076 * 300.30120 * 21 20 19 23 23 Si 1.86303 * 109.47314 * 180.29904 * 21 20 19 24 24 C 1.38251 * 120.05287 * 0.61923 * 20 19 18 25 25 C 1.38289 * 120.11146 * 359.67737 * 24 20 19 26 26 C 1.38132 * 120.05468 * 0.02562 * 25 24 20 27 27 C 1.53006 * 109.47286 * 60.00179 * 10 9 8 28 28 C 1.52997 * 109.46769 * 299.99910 * 27 10 9 29 29 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 32 32 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 34 34 H 1.09005 * 109.46903 * 300.00018 * 8 6 4 35 35 H 1.09000 * 109.47608 * 59.99121 * 8 6 4 36 36 H 1.09000 * 109.47303 * 59.98998 * 9 8 6 37 37 H 1.08995 * 109.47152 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.46690 * 295.00662 * 12 10 9 39 39 H 1.09001 * 109.46819 * 55.00059 * 12 10 9 40 40 H 0.96993 * 119.99627 * 359.97438 * 13 12 10 41 41 H 1.08997 * 109.47218 * 300.00244 * 16 14 13 42 42 H 1.09001 * 109.47216 * 60.00154 * 16 14 13 43 43 H 1.07999 * 120.02901 * 0.02562 * 19 18 17 44 44 H 1.08999 * 109.47117 * 60.29678 * 21 20 19 45 45 H 0.96701 * 113.99746 * 180.02562 * 22 21 20 46 46 H 1.48496 * 110.00132 * 298.68103 * 23 21 20 47 47 H 1.48498 * 109.99799 * 59.99941 * 23 21 20 48 48 H 1.07999 * 119.94122 * 179.69940 * 24 20 19 49 49 H 1.07997 * 119.97382 * 180.02562 * 25 24 20 50 50 H 1.07994 * 120.02372 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.46914 * 59.99560 * 27 10 9 52 52 H 1.09001 * 109.47019 * 179.97438 * 27 10 9 53 53 H 1.09003 * 109.47116 * 299.99526 * 28 27 10 54 54 H 1.09008 * 109.47127 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.5843 3.4695 0.8911 8 6 5.4484 2.8576 0.0010 9 6 6.0332 4.2714 0.0010 10 6 5.5616 5.0183 -1.2483 11 1 5.8975 4.4862 -2.1383 12 6 6.1458 6.4324 -1.2481 13 7 5.7930 7.1067 -2.4999 14 6 6.2033 8.3710 -2.7231 15 8 6.8641 8.9505 -1.8875 16 6 5.8408 9.0645 -4.0110 17 8 6.3864 10.3852 -4.0107 18 6 6.1491 11.1509 -5.1081 19 6 6.6443 12.4450 -5.1724 20 6 6.4074 13.2193 -6.2921 21 6 6.9512 14.6227 -6.3658 22 8 6.4224 15.3957 -5.2864 23 14 6.4544 15.3970 -7.9859 24 6 5.6667 12.7095 -7.3423 25 6 5.1667 11.4218 -7.2779 26 6 5.4060 10.6417 -6.1634 27 6 4.0336 5.0983 -1.2482 28 6 3.4489 3.6845 -1.2481 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.7845 2.3251 0.8908 35 1 5.7845 2.3258 -0.8891 36 1 5.6972 4.8037 0.8909 37 1 7.1217 4.2144 0.0014 38 1 5.7396 6.9931 -0.4062 39 1 7.2307 6.3772 -1.1583 40 1 5.2648 6.6431 -3.1683 41 1 6.2469 8.5033 -4.8526 42 1 4.7559 9.1199 -4.1010 43 1 7.2193 12.8452 -4.3505 44 1 8.0385 14.5953 -6.2944 45 1 6.7302 16.3123 -5.2713 46 1 7.0247 14.6206 -9.1159 47 1 4.9741 15.4403 -8.0953 48 1 5.4785 13.3180 -8.2145 49 1 4.5887 11.0257 -8.0997 50 1 5.0156 9.6360 -6.1138 51 1 3.6977 5.6305 -0.3582 52 1 3.6977 5.6308 -2.1380 53 1 3.7849 3.1523 -2.1381 54 1 2.3604 3.7414 -1.2477 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_4860298.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:17:25 Heat of formation + Delta-G solvation = -176.880961 kcal Electronic energy + Delta-G solvation = -33464.504789 eV Core-core repulsion = 28753.756651 eV Total energy + Delta-G solvation = -4710.748138 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.86032 -41.61777 -40.73239 -39.56189 -38.87894 -37.74498 -37.30917 -35.99099 -33.25813 -32.68443 -32.41833 -31.79593 -31.66913 -29.62543 -27.32139 -26.69546 -24.64317 -23.80976 -23.78245 -23.29373 -22.47032 -21.67653 -21.47977 -20.72233 -19.21607 -18.74720 -18.46300 -18.34570 -17.70715 -17.65751 -17.59058 -17.50409 -17.08491 -16.60275 -16.26024 -15.87035 -15.72292 -15.45296 -15.27041 -15.01535 -14.88150 -14.71953 -14.64957 -14.62723 -14.34076 -13.95192 -13.84784 -13.74932 -13.61511 -13.51017 -13.26015 -13.22096 -13.00994 -12.90652 -12.57896 -12.46469 -12.29430 -12.23610 -12.17170 -12.11962 -11.89451 -11.83969 -11.59735 -11.46432 -11.25278 -11.13586 -10.99955 -10.43347 -10.21582 -9.96452 -9.41848 -4.92392 0.07620 0.23289 1.08882 1.26296 1.41516 1.46389 1.62871 1.65926 1.96935 2.51084 2.55219 3.37903 3.40784 3.49484 3.57822 3.65276 3.73682 3.79346 3.84119 3.86221 3.93734 3.95955 3.97435 4.02043 4.04139 4.13432 4.16272 4.20795 4.26347 4.30239 4.37649 4.40329 4.44414 4.49454 4.55728 4.63829 4.71438 4.80409 4.83062 4.85654 4.87097 4.95503 5.07299 5.08664 5.09907 5.11373 5.15977 5.19592 5.21059 5.27564 5.30071 5.33374 5.42722 5.49286 5.53720 6.18263 6.42625 6.64832 6.87889 7.09506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.091 4.091 11 H 0.090 0.910 12 C 0.126 3.874 13 N -0.706 5.706 14 C 0.512 3.488 15 O -0.574 6.574 16 C 0.035 3.965 17 O -0.318 6.318 18 C 0.121 3.879 19 C -0.145 4.145 20 C -0.052 4.052 21 C -0.091 4.091 22 O -0.566 6.566 23 Si 0.788 3.212 24 C -0.181 4.181 25 C -0.071 4.071 26 C -0.202 4.202 27 C -0.110 4.110 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.420 0.580 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.404 0.596 46 H -0.283 1.283 47 H -0.294 1.294 48 H 0.122 0.878 49 H 0.159 0.841 50 H 0.168 0.832 51 H 0.073 0.927 52 H 0.086 0.914 53 H 0.069 0.931 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -0.303 -4.718 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.110 4.110 11 H 0.109 0.891 12 C 0.003 3.997 13 N -0.361 5.361 14 C 0.298 3.702 15 O -0.453 6.453 16 C -0.043 4.043 17 O -0.232 6.232 18 C 0.075 3.925 19 C -0.164 4.164 20 C -0.052 4.052 21 C -0.199 4.199 22 O -0.376 6.376 23 Si 0.692 3.308 24 C -0.199 4.199 25 C -0.089 4.089 26 C -0.220 4.220 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.259 0.741 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.109 0.891 45 H 0.255 0.745 46 H -0.211 1.211 47 H -0.221 1.221 48 H 0.139 0.861 49 H 0.177 0.823 50 H 0.185 0.815 51 H 0.091 0.909 52 H 0.105 0.895 53 H 0.088 0.912 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.048 -0.838 -4.538 6.139 hybrid contribution 0.020 -1.247 0.323 1.289 sum -4.027 -2.086 -4.215 6.191 Atomic orbital electron populations 1.21820 0.90643 1.04228 1.03781 1.23230 0.96943 0.79496 1.02319 1.86517 1.24368 1.33297 1.83480 1.24444 0.80487 0.93473 0.70906 1.90671 1.61166 1.44606 1.46873 1.21274 0.96569 0.88102 1.03671 0.85817 1.21375 0.91593 0.97684 1.03021 1.21480 1.01116 0.93981 0.98009 1.21390 0.96176 0.93318 1.00085 0.89126 1.21423 0.99933 0.92667 0.85698 1.45678 1.55697 1.13064 1.21658 1.20471 0.79305 0.82406 0.88029 1.90770 1.40130 1.66328 1.48061 1.22784 1.02100 0.82266 0.97129 1.86131 1.72929 1.25876 1.38218 1.19177 0.95689 0.90983 0.86602 1.20329 1.04455 0.92143 0.99423 1.19504 0.97011 0.95029 0.93663 1.25047 1.01293 0.90735 1.02850 1.86452 1.73004 1.28304 1.49802 0.94231 0.77742 0.87142 0.71663 1.21023 1.01865 0.98069 0.98960 1.21250 0.97008 0.92554 0.98094 1.21618 1.03299 1.03027 0.94043 1.21623 0.93531 0.95645 1.03951 1.21504 1.01783 0.95852 0.95070 0.91072 0.88676 0.91300 0.91474 0.91705 0.91861 0.91684 0.90578 0.90678 0.91892 0.92259 0.74140 0.85623 0.85640 0.85894 0.89149 0.74504 1.21059 1.22130 0.86058 0.82320 0.81493 0.90860 0.89546 0.91232 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.97 10.12 -51.35 -0.52 -1.49 16 4 C 0.46 1.72 7.25 71.23 0.52 2.24 16 5 O -0.54 -5.75 15.73 21.94 0.35 -5.41 16 6 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 7 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 8 C -0.10 0.25 4.49 30.59 0.14 0.39 16 9 C -0.11 0.64 5.20 30.59 0.16 0.80 16 10 C -0.09 0.73 2.23 -10.79 -0.02 0.71 16 11 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 12 C 0.13 -0.47 5.06 86.38 0.44 -0.03 16 13 N -0.71 3.71 5.28 -463.05 -2.45 1.26 16 14 C 0.51 1.47 7.91 87.66 0.69 2.16 16 15 O -0.57 -8.67 16.50 16.03 0.26 -8.41 16 16 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 17 O -0.32 -2.60 9.67 -73.39 -0.71 -3.31 16 18 C 0.12 0.82 6.69 22.51 0.15 0.97 16 19 C -0.14 -1.39 9.55 22.37 0.21 -1.17 16 20 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 21 C -0.09 -0.18 2.81 71.23 0.20 0.02 16 22 O -0.57 -1.55 12.74 -148.98 -1.90 -3.45 16 23 Si 0.79 -1.15 29.79 68.60 2.04 0.90 16 24 C -0.18 -0.97 8.67 22.28 0.19 -0.78 16 25 C -0.07 -0.09 10.04 22.26 0.22 0.14 16 26 C -0.20 -0.11 9.04 22.37 0.20 0.10 16 27 C -0.11 1.05 5.08 30.60 0.16 1.21 16 28 C -0.10 0.73 5.13 30.59 0.16 0.89 16 29 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 33 H 0.06 0.10 8.13 -2.39 -0.02 0.08 16 34 H 0.06 0.01 8.10 -2.38 -0.02 -0.01 16 35 H 0.06 -0.03 8.10 -2.39 -0.02 -0.05 16 36 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.42 -5.39 7.65 -92.71 -0.71 -6.10 16 41 H 0.13 -1.11 7.66 -2.39 -0.02 -1.13 16 42 H 0.13 -1.10 7.66 -2.39 -0.02 -1.12 16 43 H 0.12 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 45 H 0.40 -3.36 8.74 -74.06 -0.65 -4.01 16 46 H -0.28 -0.87 7.11 99.48 0.71 -0.17 16 47 H -0.29 -1.64 7.11 99.48 0.71 -0.93 16 48 H 0.12 0.49 4.87 -2.91 -0.01 0.47 16 49 H 0.16 -0.79 8.06 -2.91 -0.02 -0.82 16 50 H 0.17 -1.28 6.30 -2.91 -0.02 -1.30 16 51 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 52 H 0.09 -1.07 7.18 -2.39 -0.02 -1.09 16 53 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 54 H 0.08 -0.59 8.11 -2.38 -0.02 -0.61 16 Total: 0.00 -32.49 437.24 1.51 -30.98 By element: Atomic # 1 Polarization: -20.17 SS G_CDS: -0.41 Total: -20.57 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.84 Total: 9.50 kcal Atomic # 7 Polarization: 3.71 SS G_CDS: -2.45 Total: 1.26 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -2.52 Total: -22.06 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.04 Total: 0.90 kcal Total: -32.49 1.51 -30.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_4860298.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.902 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds