Wall clock time and date at job start Sun Mar 7 2021 07:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99505 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47518 * 300.00344 * 6 4 3 8 8 C 1.53002 * 109.46783 * 60.00307 * 6 4 3 9 9 C 1.52997 * 109.46817 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47452 * 300.00239 * 9 8 6 11 11 H 1.09002 * 109.46935 * 300.00125 * 10 9 8 12 12 C 1.53002 * 109.47197 * 180.02562 * 10 9 8 13 13 N 1.46504 * 109.46806 * 175.00000 * 12 10 9 14 14 C 1.34774 * 119.99323 * 179.97438 * 13 12 10 15 15 O 1.21695 * 120.00508 * 359.97438 * 14 13 12 16 16 C 1.46589 * 119.99412 * 179.97438 * 14 13 12 17 17 C 1.36645 * 125.45653 * 179.97438 * 16 14 13 18 18 C 1.37474 * 113.29999 * 180.02562 * 17 16 14 19 19 C 1.50692 * 122.45330 * 180.02562 * 18 17 16 20 20 C 1.33821 * 115.09708 * 0.02562 * 18 17 16 21 21 C 1.50705 * 124.52138 * 180.02562 * 20 18 17 22 22 O 1.42894 * 109.46960 * 29.99997 * 21 20 18 23 23 Si 1.86293 * 109.46983 * 150.00101 * 21 20 18 24 24 S 1.70619 * 110.95535 * 359.72294 * 20 18 17 25 25 C 1.52999 * 109.47159 * 59.99536 * 10 9 8 26 26 C 1.52997 * 109.47317 * 300.00546 * 25 10 9 27 27 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 28 28 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 30 30 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 32 32 H 1.08993 * 109.47662 * 299.99813 * 8 6 4 33 33 H 1.09002 * 109.47075 * 60.00319 * 8 6 4 34 34 H 1.09002 * 109.47153 * 60.00231 * 9 8 6 35 35 H 1.09001 * 109.47289 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46791 * 294.99945 * 12 10 9 37 37 H 1.08998 * 109.47254 * 54.99840 * 12 10 9 38 38 H 0.96997 * 119.99996 * 359.97438 * 13 12 10 39 39 H 1.08000 * 123.35648 * 359.97438 * 17 16 14 40 40 H 1.08997 * 109.47277 * 89.98036 * 19 18 17 41 41 H 1.09002 * 109.47380 * 209.97913 * 19 18 17 42 42 H 1.08997 * 109.47423 * 329.97925 * 19 18 17 43 43 H 1.08997 * 109.47089 * 270.00062 * 21 20 18 44 44 H 0.96708 * 113.99936 * 60.00328 * 22 21 20 45 45 H 1.48503 * 110.00074 * 180.02562 * 23 21 20 46 46 H 1.48496 * 110.00216 * 301.31827 * 23 21 20 47 47 H 1.08996 * 109.46929 * 179.97438 * 25 10 9 48 48 H 1.09002 * 109.46716 * 60.00455 * 25 10 9 49 49 H 1.09002 * 109.47153 * 299.99641 * 26 25 10 50 50 H 1.09001 * 109.46832 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0337 5.0987 1.2484 10 6 5.5616 5.0183 1.2494 11 1 5.8969 4.4864 2.1398 12 6 6.1468 6.4320 1.2498 13 7 7.6049 6.3569 1.3711 14 6 8.3383 7.4874 1.3926 15 8 7.7895 8.5704 1.3107 16 6 9.7971 7.4122 1.5145 17 6 10.6460 8.4825 1.5469 18 6 11.9679 8.1247 1.6669 19 6 13.0789 9.1412 1.7231 20 6 12.1959 6.8076 1.7301 21 6 13.5608 6.1825 1.8631 22 8 14.4226 7.0685 2.5802 23 14 13.4184 4.5714 2.7875 24 16 10.7346 5.9307 1.6483 25 6 6.0338 4.2706 0.0008 26 6 5.4485 2.8570 0.0010 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.3600 3.7421 1.2482 33 1 3.7841 3.1535 2.1391 34 1 3.6984 5.6306 0.3580 35 1 3.6977 5.6312 2.1382 36 1 5.8850 6.9338 0.3183 37 1 5.7406 6.9931 2.0913 38 1 8.0423 5.4936 1.4360 39 1 10.3119 9.5076 1.4838 40 1 13.2631 9.4213 2.7603 41 1 13.9856 8.7126 1.2961 42 1 12.7919 10.0252 1.1536 43 1 13.9738 5.9972 0.8716 44 1 14.1164 7.2780 3.4732 45 1 14.7578 3.9451 2.9260 46 1 12.8270 4.8061 4.1292 47 1 7.1222 4.2137 0.0013 48 1 5.6985 4.8025 -0.8896 49 1 5.7838 2.3251 0.8915 50 1 5.7846 2.3245 -0.8887 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_6739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:18:07 Heat of formation + Delta-G solvation = -141.546355 kcal Electronic energy + Delta-G solvation = -30560.735492 eV Core-core repulsion = 26259.354016 eV Total energy + Delta-G solvation = -4301.381476 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.154 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.80836 -41.02440 -39.98817 -39.36144 -37.71598 -37.42900 -35.97317 -33.21497 -32.50726 -31.89731 -31.65324 -30.23669 -28.09185 -26.09389 -24.77753 -24.27883 -23.57280 -23.09853 -21.81984 -21.55971 -20.74084 -20.19318 -19.36690 -18.70438 -17.89074 -17.62879 -17.58755 -17.27898 -16.94157 -16.62289 -16.36756 -15.85043 -15.79812 -15.32248 -15.17814 -15.11560 -14.67240 -14.64126 -14.55021 -14.41851 -13.92639 -13.84967 -13.71089 -13.52635 -13.48950 -13.19438 -13.13237 -13.03987 -12.96871 -12.90736 -12.52712 -12.41636 -12.24946 -12.18884 -12.07657 -11.85890 -11.80611 -11.56238 -11.42133 -11.37076 -11.11540 -11.05971 -10.88301 -10.26069 -9.66443 -9.36838 -5.12398 -0.65700 0.31368 0.71753 1.07560 1.13255 1.32787 1.53975 1.67188 1.87541 2.03162 2.08255 3.23519 3.44234 3.56137 3.63646 3.67471 3.72632 3.87907 3.96777 4.03727 4.05129 4.10713 4.14383 4.29094 4.29966 4.33721 4.42172 4.48158 4.50270 4.53954 4.57563 4.69095 4.72090 4.80700 4.83540 4.86666 4.89519 4.90922 4.96053 5.00661 5.10396 5.13396 5.15099 5.21865 5.24509 5.28700 5.37309 5.38542 5.44143 5.46410 5.53131 6.34643 6.35976 6.68997 7.02848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.462 3.538 5 O -0.541 6.541 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.106 4.106 10 C -0.094 4.094 11 H 0.088 0.912 12 C 0.125 3.875 13 N -0.713 5.713 14 C 0.589 3.411 15 O -0.573 6.573 16 C -0.286 4.286 17 C -0.061 4.061 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.238 4.238 21 C -0.037 4.037 22 O -0.529 6.529 23 Si 0.736 3.264 24 S 0.263 5.737 25 C -0.111 4.111 26 C -0.099 4.099 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.410 0.590 39 H 0.143 0.857 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.142 0.858 44 H 0.387 0.613 45 H -0.276 1.276 46 H -0.274 1.274 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -3.682 -0.149 4.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.113 4.113 11 H 0.107 0.893 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.376 3.624 15 O -0.454 6.454 16 C -0.406 4.406 17 C -0.095 4.095 18 C -0.121 4.121 19 C -0.151 4.151 20 C -0.358 4.358 21 C -0.148 4.148 22 O -0.338 6.338 23 Si 0.637 3.363 24 S 0.533 5.467 25 C -0.149 4.149 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.161 0.839 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.159 0.841 44 H 0.237 0.763 45 H -0.202 1.202 46 H -0.200 1.200 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.966 -5.320 -0.015 5.672 hybrid contribution 0.829 1.936 0.679 2.213 sum -1.138 -3.384 0.664 3.631 Atomic orbital electron populations 1.21821 0.90762 1.04201 1.03734 1.23224 0.96874 0.79525 1.02346 1.86522 1.24495 1.33280 1.83506 1.24436 0.80451 0.93485 0.70933 1.90661 1.61099 1.44520 1.46804 1.21280 0.96900 0.88045 1.03392 0.85749 1.21477 1.01723 0.95712 0.95235 1.21479 0.93080 0.95896 1.03978 1.21426 0.96395 0.93591 0.99878 0.89334 1.21510 0.77944 0.98029 1.02329 1.45809 1.08372 1.08147 1.74103 1.17156 0.85193 0.84271 0.75826 1.90829 1.72969 1.29575 1.52048 1.24665 0.96897 0.99602 1.19444 1.20751 0.91748 0.99847 0.97130 1.18749 0.95048 0.94468 1.03846 1.20602 0.95613 0.96006 1.02838 1.24672 1.02099 0.98402 1.10655 1.24638 0.85595 1.00867 1.03683 1.86621 1.49683 1.65427 1.32056 0.94703 0.83716 0.76047 0.81826 1.82365 0.92701 1.04947 1.66731 1.21621 1.01145 0.94075 0.98023 1.21398 0.91304 0.97758 1.03250 0.91282 0.88675 0.91207 0.91575 0.91505 0.89937 0.91495 0.90297 0.90167 0.91405 0.91583 0.75274 0.83886 0.90658 0.90005 0.91950 0.84098 0.76262 1.20166 1.19955 0.90315 0.90722 0.91424 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.29 71.98 0.74 1.33 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.00 10.12 -51.40 -0.52 -1.52 16 4 C 0.46 1.57 7.25 71.24 0.52 2.09 16 5 O -0.54 -5.27 15.73 21.99 0.35 -4.93 16 6 C -0.08 0.26 2.63 -11.54 -0.03 0.23 16 7 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.10 0.60 5.14 30.59 0.16 0.76 16 9 C -0.11 0.81 5.20 30.60 0.16 0.97 16 10 C -0.09 0.69 2.22 -10.79 -0.02 0.66 16 11 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 12 C 0.12 -0.36 5.07 86.38 0.44 0.08 16 13 N -0.71 1.02 5.28 -467.17 -2.47 -1.45 16 14 C 0.59 3.44 7.78 86.42 0.67 4.11 16 15 O -0.57 -8.24 16.84 -4.33 -0.07 -8.32 16 16 C -0.29 -0.87 6.45 24.08 0.16 -0.71 16 17 C -0.06 -0.26 9.80 21.72 0.21 -0.05 16 18 C -0.11 -0.14 5.75 -21.05 -0.12 -0.27 16 19 C -0.09 0.04 8.67 71.23 0.62 0.66 16 20 C -0.24 0.39 5.54 24.68 0.14 0.52 16 21 C -0.04 0.14 2.76 71.24 0.20 0.33 16 22 O -0.53 0.87 9.85 -148.98 -1.47 -0.59 16 23 Si 0.74 -3.19 31.30 68.60 2.15 -1.04 16 24 S 0.26 -1.04 19.78 -56.49 -1.12 -2.16 16 25 C -0.11 0.81 5.08 30.59 0.16 0.97 16 26 C -0.10 0.39 4.49 30.59 0.14 0.53 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.09 -0.64 8.14 -2.39 -0.02 -0.65 16 29 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 31 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 32 H 0.08 -0.46 8.11 -2.39 -0.02 -0.48 16 33 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.41 -2.69 6.77 -92.71 -0.63 -3.32 16 39 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.08 0.02 6.41 -2.39 -0.02 0.01 16 42 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 43 H 0.14 -0.84 7.96 -2.39 -0.02 -0.86 16 44 H 0.39 -2.39 8.66 -74.05 -0.64 -3.04 16 45 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 46 H -0.27 -0.09 7.11 99.48 0.71 0.62 16 47 H 0.08 -0.68 7.18 -2.39 -0.02 -0.70 16 48 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 50 H 0.07 -0.12 8.10 -2.39 -0.02 -0.14 16 Total: 0.00 -20.88 414.90 1.13 -19.75 By element: Atomic # 1 Polarization: -12.17 SS G_CDS: -0.28 Total: -12.45 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 4.57 Total: 12.70 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -2.47 Total: -1.45 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.72 Total: -15.36 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.15 Total: -1.04 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -1.12 Total: -2.16 kcal Total: -20.88 1.13 -19.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_6739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.799 kcal (2) G-P(sol) polarization free energy of solvation -20.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds