Wall clock time and date at job start Sun Mar 7 2021 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47274 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00650 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99682 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47152 * 300.00157 * 6 4 3 8 8 C 1.53002 * 109.47292 * 60.00212 * 6 4 3 9 9 C 1.53001 * 109.46963 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46886 * 299.99499 * 9 8 6 11 11 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 12 12 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47195 * 64.99866 * 12 10 9 14 14 C 1.34777 * 120.00267 * 179.97438 * 13 12 10 15 15 O 1.21639 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.47192 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.36009 * 123.46215 * 0.02902 * 16 14 13 18 18 S 1.70448 * 110.81663 * 179.97438 * 17 16 14 19 19 C 1.75504 * 92.44440 * 0.02562 * 18 17 16 20 20 C 1.50701 * 124.70891 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47319 * 245.02528 * 20 19 18 22 22 Si 1.86301 * 109.47326 * 5.02570 * 20 19 18 23 23 C 1.32765 * 110.57721 * 359.73482 * 19 18 17 24 24 C 1.53002 * 109.47233 * 60.00670 * 10 9 8 25 25 C 1.52997 * 109.47084 * 180.02562 * 6 4 3 26 26 H 1.09003 * 109.46656 * 59.99854 * 1 2 3 27 27 H 1.08994 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47083 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47083 * 239.99778 * 2 1 3 30 30 H 1.09003 * 109.47119 * 119.99884 * 2 1 3 31 31 H 1.09000 * 109.46497 * 300.00140 * 8 6 4 32 32 H 1.09002 * 109.47067 * 59.99892 * 8 6 4 33 33 H 1.09001 * 109.46652 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47514 * 59.99933 * 9 8 6 35 35 H 1.09001 * 109.47630 * 185.00216 * 12 10 9 36 36 H 1.09004 * 109.47346 * 305.00346 * 12 10 9 37 37 H 0.96999 * 120.00041 * 0.02562 * 13 12 10 38 38 H 1.08000 * 124.59182 * 359.97438 * 17 16 14 39 39 H 1.09002 * 109.47138 * 125.02520 * 20 19 18 40 40 H 0.96699 * 114.00028 * 60.00185 * 21 20 19 41 41 H 1.48498 * 109.99980 * 179.97438 * 22 20 19 42 42 H 1.48493 * 109.99795 * 301.31822 * 22 20 19 43 43 H 1.08001 * 123.46118 * 180.22913 * 23 19 18 44 44 H 1.09002 * 109.47075 * 59.99068 * 24 10 9 45 45 H 1.08996 * 109.47407 * 180.02562 * 24 10 9 46 46 H 1.09001 * 109.47375 * 60.00042 * 25 6 4 47 47 H 1.09002 * 109.47497 * 299.99683 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4697 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 4.0333 5.0979 1.2507 10 6 5.5612 5.0182 1.2510 11 1 5.8972 4.4860 2.1409 12 6 6.1457 6.4322 1.2518 13 7 5.7925 7.1058 2.5039 14 6 6.2028 8.3699 2.7281 15 8 6.8660 8.9516 1.8907 16 6 5.8484 9.0464 3.9864 17 6 5.1117 8.4632 4.9697 18 16 4.8947 9.5326 6.2792 19 6 5.8158 10.8024 5.4922 20 6 6.0801 12.1632 6.0835 21 8 5.4344 13.1609 5.2901 22 14 5.4134 12.2250 7.8221 23 6 6.2517 10.3960 4.3059 24 6 6.0332 4.2717 0.0016 25 6 5.4487 2.8571 0.0010 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3604 3.7410 1.2501 32 1 3.7846 3.1515 2.1404 33 1 3.6967 5.6299 2.1405 34 1 3.6974 5.6301 0.3608 35 1 7.2306 6.3771 1.1624 36 1 5.7398 6.9937 0.4103 37 1 5.2639 6.6418 3.1719 38 1 4.7175 7.4587 4.9267 39 1 7.1538 12.3502 6.0993 40 1 4.4748 13.0568 5.2316 41 1 5.6684 13.5617 8.4165 42 1 3.9561 11.9402 7.8175 43 1 6.8443 11.0123 3.6460 44 1 5.6972 4.8038 -0.8883 45 1 7.1217 4.2145 0.0020 46 1 5.7846 2.3254 -0.8892 47 1 5.7847 2.3246 0.8908 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14654746_6894386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:18:11 Heat of formation + Delta-G solvation = -142.798251 kcal Electronic energy + Delta-G solvation = -28410.794146 eV Core-core repulsion = 24264.896002 eV Total energy + Delta-G solvation = -4145.898144 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77450 -40.99647 -39.66569 -38.80882 -37.61809 -37.16980 -35.90444 -33.28317 -32.50033 -31.94705 -31.55464 -27.93560 -26.97894 -25.56982 -24.42096 -23.94316 -23.18388 -21.99087 -21.68201 -20.97791 -20.37139 -19.08626 -18.65764 -18.09350 -17.79079 -17.60761 -17.51505 -16.71449 -16.54791 -16.33832 -15.93166 -15.67576 -15.39582 -15.26619 -15.01596 -14.90398 -14.64470 -14.39456 -14.11217 -13.98469 -13.87679 -13.69018 -13.59670 -13.46005 -13.40297 -13.08300 -12.89208 -12.70544 -12.62364 -12.42071 -12.36343 -12.27021 -11.93392 -11.83842 -11.64525 -11.51482 -11.30310 -11.19129 -10.92269 -10.73958 -10.16960 -10.03249 -9.53535 -5.13639 -0.39272 0.31016 0.65490 0.89418 1.15411 1.20920 1.48054 1.64116 1.84342 2.10891 2.37116 3.22731 3.33236 3.41312 3.48273 3.51085 3.75594 3.79876 3.82993 3.91766 3.93339 3.96925 4.01663 4.14196 4.20262 4.24822 4.26270 4.28546 4.32095 4.43691 4.54055 4.58794 4.65788 4.68656 4.70670 4.77091 4.82814 4.87610 4.92872 4.98263 4.98761 5.02686 5.04527 5.13796 5.19338 5.26341 5.38879 5.47966 6.27478 6.42765 6.76189 7.20836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.464 3.536 5 O -0.506 6.506 6 C -0.080 4.080 7 H 0.110 0.890 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.103 4.103 11 H 0.081 0.919 12 C 0.124 3.876 13 N -0.726 5.726 14 C 0.577 3.423 15 O -0.531 6.531 16 C -0.155 4.155 17 C -0.207 4.207 18 S 0.197 5.803 19 C -0.241 4.241 20 C -0.033 4.033 21 O -0.522 6.522 22 Si 0.649 3.351 23 C -0.053 4.053 24 C -0.111 4.111 25 C -0.103 4.103 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.171 0.829 39 H 0.128 0.872 40 H 0.377 0.623 41 H -0.234 1.234 42 H -0.238 1.238 43 H 0.157 0.843 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -2.687 3.805 5.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.393 6.393 6 C -0.099 4.099 7 H 0.128 0.872 8 C -0.148 4.148 9 C -0.151 4.151 10 C -0.122 4.122 11 H 0.099 0.901 12 C 0.001 3.999 13 N -0.378 5.378 14 C 0.362 3.638 15 O -0.409 6.409 16 C -0.173 4.173 17 C -0.345 4.345 18 S 0.463 5.537 19 C -0.358 4.358 20 C -0.145 4.145 21 O -0.329 6.329 22 Si 0.548 3.452 23 C -0.082 4.082 24 C -0.149 4.149 25 C -0.141 4.141 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.188 0.812 39 H 0.146 0.854 40 H 0.225 0.775 41 H -0.157 1.157 42 H -0.162 1.162 43 H 0.174 0.826 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.785 -2.102 5.068 6.665 hybrid contribution -0.320 -0.286 -2.002 2.048 sum -4.104 -2.389 3.065 5.652 Atomic orbital electron populations 1.21819 0.92344 1.03259 1.03627 1.23073 0.95583 0.79931 1.02713 1.86507 1.24496 1.32674 1.83807 1.23808 0.80640 0.92717 0.72183 1.90687 1.60461 1.43196 1.44992 1.21156 0.96898 0.89632 1.02173 0.87174 1.21530 1.01560 0.95641 0.96072 1.21624 0.94349 0.96163 1.03009 1.21487 0.95770 0.94865 1.00049 0.90068 1.21449 1.00563 0.91837 0.86089 1.45844 1.56395 1.14476 1.21108 1.17602 0.79345 0.81121 0.85711 1.90834 1.38578 1.65248 1.46196 1.20271 1.04829 0.95909 0.96264 1.25784 1.04089 1.05343 0.99315 1.83161 1.49852 1.02777 1.17898 1.24742 1.08680 1.01721 1.00662 1.24409 1.03036 0.82912 1.04179 1.86649 1.24983 1.50262 1.70987 0.95256 0.83447 0.88896 0.77618 1.21067 0.98485 0.93162 0.95481 1.21520 1.01186 0.94776 0.97385 1.21452 0.91383 0.97175 1.04086 0.91373 0.90021 0.91394 0.91137 0.91156 0.90209 0.91202 0.91340 0.90918 0.90939 0.90964 0.76665 0.81208 0.85424 0.77461 1.15681 1.16239 0.82588 0.91003 0.90577 0.90548 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 10.29 37.16 0.38 0.67 16 2 C 0.06 0.01 6.19 37.16 0.23 0.24 16 3 O -0.36 -0.45 10.12 -39.25 -0.40 -0.85 16 4 C 0.46 0.75 7.26 36.01 0.26 1.01 16 5 O -0.51 -2.35 15.73 -18.75 -0.29 -2.64 16 6 C -0.08 0.11 2.63 -91.77 -0.24 -0.13 16 7 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 8 C -0.11 0.30 5.14 -26.73 -0.14 0.16 16 9 C -0.11 0.40 5.08 -26.73 -0.14 0.27 16 10 C -0.10 0.33 2.22 -90.62 -0.20 0.12 16 11 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 12 C 0.12 -0.15 5.07 -4.04 -0.02 -0.18 16 13 N -0.73 0.73 5.25 -61.46 -0.32 0.41 16 14 C 0.58 1.38 7.79 -12.62 -0.10 1.28 16 15 O -0.53 -3.48 16.80 5.24 0.09 -3.40 16 16 C -0.15 -0.14 5.98 -104.63 -0.63 -0.76 16 17 C -0.21 0.38 10.38 29.93 0.31 0.69 16 18 S 0.20 -0.39 20.20 -107.50 -2.17 -2.56 16 19 C -0.24 0.07 5.65 -36.18 -0.20 -0.13 16 20 C -0.03 0.02 2.94 36.01 0.11 0.13 16 21 O -0.52 -0.46 12.88 -35.23 -0.45 -0.91 16 22 Si 0.65 -1.08 30.92 -169.99 -5.26 -6.33 16 23 C -0.05 -0.08 9.95 -39.02 -0.39 -0.46 16 24 C -0.11 0.30 5.21 -26.70 -0.14 0.16 16 25 C -0.10 0.14 4.50 -26.71 -0.12 0.02 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 0.02 8.13 -51.93 -0.42 -0.40 16 30 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 31 H 0.08 -0.21 8.11 -51.93 -0.42 -0.63 16 32 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 33 H 0.07 -0.29 7.18 -51.93 -0.37 -0.66 16 34 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 35 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.40 -1.47 6.15 -40.82 -0.25 -1.72 16 38 H 0.17 -0.82 7.01 -52.49 -0.37 -1.19 16 39 H 0.13 -0.18 7.96 -51.93 -0.41 -0.59 16 40 H 0.38 -0.79 8.70 45.56 0.40 -0.40 16 41 H -0.23 -0.30 7.11 56.52 0.40 0.10 16 42 H -0.24 0.06 7.11 56.52 0.40 0.46 16 43 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 44 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 45 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 46 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 47 H 0.07 -0.04 8.10 -51.93 -0.42 -0.46 16 LS Contribution 397.59 15.07 5.99 5.99 Total: 0.00 -8.90 397.59 -11.23 -20.13 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: -7.39 Total: -12.93 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.02 Total: 3.09 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.32 Total: 0.41 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.06 Total: -7.80 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.26 Total: -6.33 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.17 Total: -2.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -8.90 -11.23 -20.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_6894386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.670 kcal (2) G-P(sol) polarization free energy of solvation -8.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds