Wall clock time and date at job start Sun Mar 7 2021 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47274 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00650 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99682 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47152 * 300.00157 * 6 4 3 8 8 C 1.53002 * 109.47292 * 60.00212 * 6 4 3 9 9 C 1.53001 * 109.46963 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46886 * 299.99499 * 9 8 6 11 11 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 12 12 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47195 * 64.99866 * 12 10 9 14 14 C 1.34777 * 120.00267 * 179.97438 * 13 12 10 15 15 O 1.21639 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.47192 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.36009 * 123.46215 * 0.02902 * 16 14 13 18 18 S 1.70448 * 110.81663 * 179.97438 * 17 16 14 19 19 C 1.75504 * 92.44440 * 0.02562 * 18 17 16 20 20 C 1.50701 * 124.70891 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47319 * 245.02528 * 20 19 18 22 22 Si 1.86301 * 109.47326 * 5.02570 * 20 19 18 23 23 C 1.32765 * 110.57721 * 359.73482 * 19 18 17 24 24 C 1.53002 * 109.47233 * 60.00670 * 10 9 8 25 25 C 1.52997 * 109.47084 * 180.02562 * 6 4 3 26 26 H 1.09003 * 109.46656 * 59.99854 * 1 2 3 27 27 H 1.08994 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47083 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47083 * 239.99778 * 2 1 3 30 30 H 1.09003 * 109.47119 * 119.99884 * 2 1 3 31 31 H 1.09000 * 109.46497 * 300.00140 * 8 6 4 32 32 H 1.09002 * 109.47067 * 59.99892 * 8 6 4 33 33 H 1.09001 * 109.46652 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47514 * 59.99933 * 9 8 6 35 35 H 1.09001 * 109.47630 * 185.00216 * 12 10 9 36 36 H 1.09004 * 109.47346 * 305.00346 * 12 10 9 37 37 H 0.96999 * 120.00041 * 0.02562 * 13 12 10 38 38 H 1.08000 * 124.59182 * 359.97438 * 17 16 14 39 39 H 1.09002 * 109.47138 * 125.02520 * 20 19 18 40 40 H 0.96699 * 114.00028 * 60.00185 * 21 20 19 41 41 H 1.48498 * 109.99980 * 179.97438 * 22 20 19 42 42 H 1.48493 * 109.99795 * 301.31822 * 22 20 19 43 43 H 1.08001 * 123.46118 * 180.22913 * 23 19 18 44 44 H 1.09002 * 109.47075 * 59.99068 * 24 10 9 45 45 H 1.08996 * 109.47407 * 180.02562 * 24 10 9 46 46 H 1.09001 * 109.47375 * 60.00042 * 25 6 4 47 47 H 1.09002 * 109.47497 * 299.99683 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4697 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 4.0333 5.0979 1.2507 10 6 5.5612 5.0182 1.2510 11 1 5.8972 4.4860 2.1409 12 6 6.1457 6.4322 1.2518 13 7 5.7925 7.1058 2.5039 14 6 6.2028 8.3699 2.7281 15 8 6.8660 8.9516 1.8907 16 6 5.8484 9.0464 3.9864 17 6 5.1117 8.4632 4.9697 18 16 4.8947 9.5326 6.2792 19 6 5.8158 10.8024 5.4922 20 6 6.0801 12.1632 6.0835 21 8 5.4344 13.1609 5.2901 22 14 5.4134 12.2250 7.8221 23 6 6.2517 10.3960 4.3059 24 6 6.0332 4.2717 0.0016 25 6 5.4487 2.8571 0.0010 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3604 3.7410 1.2501 32 1 3.7846 3.1515 2.1404 33 1 3.6967 5.6299 2.1405 34 1 3.6974 5.6301 0.3608 35 1 7.2306 6.3771 1.1624 36 1 5.7398 6.9937 0.4103 37 1 5.2639 6.6418 3.1719 38 1 4.7175 7.4587 4.9267 39 1 7.1538 12.3502 6.0993 40 1 4.4748 13.0568 5.2316 41 1 5.6684 13.5617 8.4165 42 1 3.9561 11.9402 7.8175 43 1 6.8443 11.0123 3.6460 44 1 5.6972 4.8038 -0.8883 45 1 7.1217 4.2145 0.0020 46 1 5.7846 2.3254 -0.8892 47 1 5.7847 2.3246 0.8908 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_6894386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:18:10 Heat of formation + Delta-G solvation = -140.677524 kcal Electronic energy + Delta-G solvation = -28410.702184 eV Core-core repulsion = 24264.896002 eV Total energy + Delta-G solvation = -4145.806182 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.84056 -41.07518 -39.58356 -38.82191 -37.73874 -37.19268 -35.97169 -33.24432 -32.44504 -31.77756 -31.48497 -27.89818 -26.93457 -25.55437 -24.37173 -23.75883 -23.15204 -22.01473 -21.62537 -20.88301 -20.35354 -19.01517 -18.73450 -18.09814 -17.78825 -17.67436 -17.54447 -16.71745 -16.55932 -16.30243 -15.90139 -15.68250 -15.28986 -15.20803 -14.97883 -14.78974 -14.65167 -14.41768 -14.07553 -13.92965 -13.75206 -13.64947 -13.55750 -13.42062 -13.24422 -12.99636 -12.89212 -12.64525 -12.56417 -12.42787 -12.25221 -12.11203 -11.88397 -11.82961 -11.58569 -11.45326 -11.22931 -11.12219 -10.99770 -10.73236 -10.22882 -9.97875 -9.43473 -5.02615 -0.32380 0.40893 0.71123 0.83575 1.10092 1.23414 1.56277 1.63914 1.91872 2.13126 2.28274 3.31881 3.41837 3.57897 3.61217 3.65991 3.84672 3.92413 3.95126 3.97796 4.00398 4.03216 4.15729 4.26794 4.30442 4.31874 4.38764 4.45580 4.50336 4.50884 4.65472 4.71957 4.73817 4.81677 4.84261 4.88109 4.96511 5.01351 5.08419 5.10794 5.12281 5.17235 5.18535 5.21751 5.31186 5.36920 5.43999 5.50887 6.41691 6.47445 6.66072 7.16181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.091 4.091 11 H 0.089 0.911 12 C 0.126 3.874 13 N -0.708 5.708 14 C 0.573 3.427 15 O -0.587 6.587 16 C -0.183 4.183 17 C -0.189 4.189 18 S 0.249 5.751 19 C -0.246 4.246 20 C -0.048 4.048 21 O -0.545 6.545 22 Si 0.729 3.271 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.099 4.099 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.414 0.586 38 H 0.205 0.795 39 H 0.128 0.872 40 H 0.388 0.612 41 H -0.277 1.277 42 H -0.248 1.248 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -3.477 5.349 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.141 4.141 9 C -0.147 4.147 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.002 3.998 13 N -0.360 5.360 14 C 0.360 3.640 15 O -0.468 6.468 16 C -0.200 4.200 17 C -0.327 4.327 18 S 0.516 5.484 19 C -0.363 4.363 20 C -0.158 4.158 21 O -0.354 6.354 22 Si 0.629 3.371 23 C -0.105 4.105 24 C -0.145 4.145 25 C -0.137 4.137 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.222 0.778 39 H 0.146 0.854 40 H 0.238 0.762 41 H -0.203 1.203 42 H -0.173 1.173 43 H 0.149 0.851 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.485 -2.933 6.614 9.079 hybrid contribution 0.167 -0.045 -2.455 2.461 sum -5.317 -2.978 4.159 7.379 Atomic orbital electron populations 1.21819 0.90650 1.04227 1.03774 1.23231 0.96941 0.79502 1.02332 1.86519 1.24364 1.33297 1.83489 1.24429 0.80485 0.93445 0.70912 1.90668 1.61162 1.44583 1.46852 1.21271 0.96587 0.88125 1.03629 0.85839 1.21497 1.01772 0.95738 0.95135 1.21611 0.93596 0.95706 1.03819 1.21388 0.96141 0.93357 1.00115 0.89235 1.21423 0.99929 0.92708 0.85712 1.45715 1.55478 1.13445 1.21413 1.17912 0.78650 0.81734 0.85705 1.90800 1.41313 1.66677 1.48035 1.20110 1.07196 0.95992 0.96732 1.26175 1.01799 1.06616 0.98152 1.83005 1.47920 1.01020 1.16502 1.24813 1.08669 1.02409 1.00386 1.24732 1.03419 0.82603 1.05063 1.86614 1.26123 1.50962 1.71659 0.94397 0.81533 0.86293 0.74864 1.21001 0.99521 0.93860 0.96153 1.21488 1.01135 0.93976 0.97922 1.21387 0.91576 0.97648 1.03050 0.91321 0.88669 0.91067 0.91704 0.91451 0.89821 0.91171 0.89836 0.90879 0.92211 0.91927 0.74801 0.77779 0.85420 0.76224 1.20304 1.17314 0.85086 0.90560 0.90638 0.91803 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.95 10.12 -51.41 -0.52 -1.47 16 4 C 0.46 1.71 7.26 71.24 0.52 2.22 16 5 O -0.54 -5.70 15.73 21.97 0.35 -5.35 16 6 C -0.08 0.24 2.63 -11.54 -0.03 0.21 16 7 H 0.12 -0.70 8.14 -2.39 -0.02 -0.71 16 8 C -0.10 0.70 5.14 30.60 0.16 0.86 16 9 C -0.11 0.96 5.08 30.59 0.16 1.12 16 10 C -0.09 0.66 2.22 -10.79 -0.02 0.63 16 11 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 12 C 0.13 -0.30 5.07 86.38 0.44 0.14 16 13 N -0.71 1.79 5.25 -466.59 -2.45 -0.66 16 14 C 0.57 3.25 7.79 86.60 0.67 3.93 16 15 O -0.59 -9.19 16.80 -4.15 -0.07 -9.26 16 16 C -0.18 -0.35 5.98 -19.87 -0.12 -0.47 16 17 C -0.19 1.08 10.38 67.30 0.70 1.78 16 18 S 0.25 -1.51 20.20 -56.49 -1.14 -2.65 16 19 C -0.25 0.12 5.65 24.51 0.14 0.26 16 20 C -0.05 0.04 2.94 71.24 0.21 0.25 16 21 O -0.55 -1.53 12.88 -148.98 -1.92 -3.45 16 22 Si 0.73 -2.79 30.92 68.60 2.12 -0.67 16 23 C -0.08 -0.33 9.95 22.67 0.23 -0.11 16 24 C -0.11 0.60 5.21 30.61 0.16 0.76 16 25 C -0.10 0.24 4.50 30.61 0.14 0.38 16 26 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.06 0.09 8.13 -2.39 -0.02 0.08 16 30 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 31 H 0.08 -0.58 8.11 -2.39 -0.02 -0.60 16 32 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.08 -0.94 7.18 -2.39 -0.02 -0.96 16 34 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 37 H 0.41 -3.91 6.15 -92.71 -0.57 -4.48 16 38 H 0.21 -2.76 7.01 -2.91 -0.02 -2.78 16 39 H 0.13 -0.21 7.96 -2.39 -0.02 -0.22 16 40 H 0.39 -1.39 8.70 -74.06 -0.64 -2.03 16 41 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 42 H -0.25 0.54 7.11 99.48 0.71 1.24 16 43 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.06 0.01 8.10 -2.39 -0.02 -0.01 16 47 H 0.06 -0.03 8.10 -2.39 -0.02 -0.05 16 Total: 0.00 -24.04 397.59 0.70 -23.34 By element: Atomic # 1 Polarization: -13.44 SS G_CDS: -0.19 Total: -13.63 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.52 Total: 13.80 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -2.45 Total: -0.66 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -2.16 Total: -19.53 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.12 Total: -0.67 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -1.14 Total: -2.65 kcal Total: -24.04 0.70 -23.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_6894386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.341 kcal (2) G-P(sol) polarization free energy of solvation -24.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds