Wall clock time and date at job start Sun Mar 7 2021 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47059 * 2 1 4 4 C 1.34230 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20816 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99797 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.47291 * 300.00117 * 6 4 3 8 8 C 1.53001 * 109.47407 * 59.99624 * 6 4 3 9 9 C 1.53001 * 109.47380 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47063 * 300.00172 * 9 8 6 11 11 H 1.08999 * 109.47720 * 299.99760 * 10 9 8 12 12 C 1.53001 * 109.47112 * 179.97438 * 10 9 8 13 13 N 1.46502 * 109.47127 * 65.00375 * 12 10 9 14 14 C 1.34772 * 120.00385 * 180.02562 * 13 12 10 15 15 O 1.21547 * 119.99825 * 359.97438 * 14 13 12 16 16 C 1.47854 * 120.00119 * 179.97438 * 14 13 12 17 17 C 1.39554 * 120.14077 * 173.98817 * 16 14 13 18 18 C 1.50699 * 120.07481 * 359.95789 * 17 16 14 19 19 C 1.37975 * 119.84766 * 179.97438 * 17 16 14 20 20 C 1.38339 * 120.14634 * 0.02632 * 19 17 16 21 21 C 1.50703 * 119.85094 * 179.97438 * 20 19 17 22 22 C 1.38374 * 120.29133 * 359.97438 * 20 19 17 23 23 C 1.50702 * 119.92510 * 179.97438 * 22 20 19 24 24 O 1.42900 * 109.47342 * 285.00066 * 23 22 20 25 25 Si 1.86307 * 109.47150 * 164.99683 * 23 22 20 26 26 C 1.37935 * 120.14909 * 359.74252 * 22 20 19 27 27 C 1.53007 * 109.47223 * 60.00205 * 10 9 8 28 28 C 1.53000 * 109.47236 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.46916 * 60.00709 * 1 2 3 30 30 H 1.09005 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47546 * 300.00711 * 1 2 3 32 32 H 1.08995 * 109.47080 * 239.99458 * 2 1 3 33 33 H 1.09001 * 109.46678 * 119.99731 * 2 1 3 34 34 H 1.09010 * 109.46853 * 59.99990 * 8 6 4 35 35 H 1.08998 * 109.47422 * 300.00547 * 8 6 4 36 36 H 1.09001 * 109.47344 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.46814 * 60.00141 * 9 8 6 38 38 H 1.09004 * 109.47399 * 184.99733 * 12 10 9 39 39 H 1.08996 * 109.47240 * 305.00320 * 12 10 9 40 40 H 0.97009 * 119.99622 * 359.97438 * 13 12 10 41 41 H 1.09001 * 109.46951 * 83.46496 * 18 17 16 42 42 H 1.09006 * 109.46946 * 203.45332 * 18 17 16 43 43 H 1.08990 * 109.47418 * 323.45455 * 18 17 16 44 44 H 1.08010 * 119.92774 * 179.97438 * 19 17 16 45 45 H 1.08999 * 109.47144 * 90.00144 * 21 20 19 46 46 H 1.08998 * 109.46952 * 209.99869 * 21 20 19 47 47 H 1.09001 * 109.47512 * 329.99783 * 21 20 19 48 48 H 1.09000 * 109.47456 * 45.00137 * 23 22 20 49 49 H 0.96703 * 114.00316 * 180.02562 * 24 23 22 50 50 H 1.48498 * 109.99479 * 60.00065 * 25 23 22 51 51 H 1.48504 * 109.99852 * 181.31645 * 25 23 22 52 52 H 1.07995 * 120.07529 * 180.28373 * 26 22 20 53 53 H 1.08995 * 109.47226 * 180.02562 * 27 10 9 54 54 H 1.08999 * 109.47136 * 59.99197 * 27 10 9 55 55 H 1.09001 * 109.46929 * 59.99743 * 28 6 4 56 56 H 1.08998 * 109.46861 * 300.00310 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5852 3.4690 -0.8905 8 6 3.4485 3.6851 1.2485 9 6 4.0338 5.0987 1.2483 10 6 5.5616 5.0181 1.2494 11 1 5.8969 4.4863 2.1399 12 6 6.1469 6.4318 1.2485 13 7 5.7936 7.1074 2.4995 14 6 6.2037 8.3718 2.7217 15 8 6.8672 8.9515 1.8843 16 6 5.8466 9.0538 3.9840 17 6 6.3723 10.3139 4.2727 18 6 7.3069 10.9836 3.2985 19 6 6.0346 10.9451 5.4522 20 6 5.1774 10.3313 6.3479 21 6 4.8135 11.0265 7.6345 22 6 4.6528 9.0819 6.0677 23 6 3.7202 8.4206 7.0496 24 8 4.4706 7.9277 8.1614 25 14 2.8428 7.0044 6.2156 26 6 4.9777 8.4425 4.8895 27 6 6.0339 4.2704 0.0008 28 6 5.4486 2.8573 0.0014 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7840 3.1535 2.1391 35 1 2.3600 3.7421 1.2480 36 1 3.6977 5.6313 2.1380 37 1 3.6987 5.6305 0.3578 38 1 7.2319 6.3758 1.1598 39 1 5.7419 6.9922 0.4060 40 1 5.2638 6.6448 3.1677 41 1 6.7262 11.4917 2.5286 42 1 7.9234 11.7104 3.8275 43 1 7.9472 10.2332 2.8349 44 1 6.4410 11.9202 5.6771 45 1 3.9230 11.6356 7.4791 46 1 4.6146 10.2824 8.4058 47 1 5.6395 11.6642 7.9493 48 1 2.9867 9.1468 7.3997 49 1 3.9333 7.4882 8.8347 50 1 3.8320 6.0073 5.7337 51 1 1.8967 6.3638 7.1642 52 1 4.5639 7.4694 4.6699 53 1 7.1223 4.2126 0.0018 54 1 5.6987 4.8022 -0.8897 55 1 5.7853 2.3245 -0.8879 56 1 5.7837 2.3258 0.8921 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_9599494.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:18:21 Heat of formation + Delta-G solvation = -145.623900 kcal Electronic energy + Delta-G solvation = -35029.096362 eV Core-core repulsion = 30482.848205 eV Total energy + Delta-G solvation = -4546.248157 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.213 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.86752 -41.62120 -40.19318 -39.37844 -37.80314 -37.67662 -36.09585 -34.43301 -33.79067 -32.90797 -32.13827 -31.73523 -29.48789 -28.67762 -27.27717 -25.49680 -24.66087 -23.81384 -23.60973 -23.28826 -22.15745 -21.62305 -21.00625 -20.58329 -18.73808 -18.66903 -18.55093 -17.68429 -17.59558 -17.48229 -16.63365 -16.56384 -16.29648 -16.07856 -15.85290 -15.33770 -15.23159 -15.07019 -14.91974 -14.80418 -14.66954 -14.56404 -14.51168 -14.05531 -13.93151 -13.81035 -13.66164 -13.51639 -13.38146 -13.23803 -13.12102 -12.96793 -12.88553 -12.81799 -12.68250 -12.58343 -12.56183 -12.25279 -12.10622 -11.91286 -11.86483 -11.83934 -11.58744 -11.45395 -11.19683 -11.10909 -10.71847 -10.44908 -10.18759 -9.87837 -9.57680 -4.94954 -0.22761 0.18079 1.09975 1.27270 1.56834 1.63793 1.74616 1.91335 2.10220 2.63830 3.33034 3.41665 3.56953 3.61856 3.64207 3.67157 3.78572 3.84832 3.86419 3.94749 3.98080 4.03119 4.12791 4.15054 4.23362 4.28080 4.31402 4.38584 4.45110 4.45667 4.50454 4.53630 4.59306 4.67047 4.69757 4.74177 4.80525 4.81943 4.82573 4.84329 4.88313 4.93506 4.96884 5.06824 5.08340 5.10544 5.12349 5.16375 5.18247 5.21692 5.26378 5.32560 5.40126 5.44260 5.49817 5.50807 5.53666 5.82676 6.43434 6.60385 6.65916 7.14431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.544 6.544 6 C -0.076 4.076 7 H 0.129 0.871 8 C -0.106 4.106 9 C -0.112 4.112 10 C -0.096 4.096 11 H 0.079 0.921 12 C 0.127 3.873 13 N -0.717 5.717 14 C 0.556 3.444 15 O -0.561 6.561 16 C -0.160 4.160 17 C -0.026 4.026 18 C -0.117 4.117 19 C -0.137 4.137 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.099 4.099 23 C -0.082 4.082 24 O -0.553 6.553 25 Si 0.746 3.254 26 C -0.074 4.074 27 C -0.105 4.105 28 C -0.100 4.100 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.407 0.593 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.395 0.605 50 H -0.279 1.279 51 H -0.283 1.283 52 H 0.142 0.858 53 H 0.074 0.926 54 H 0.082 0.918 55 H 0.065 0.935 56 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 1.703 2.140 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.434 6.434 6 C -0.095 4.095 7 H 0.147 0.853 8 C -0.144 4.144 9 C -0.150 4.150 10 C -0.115 4.115 11 H 0.097 0.903 12 C 0.004 3.996 13 N -0.370 5.370 14 C 0.345 3.655 15 O -0.442 6.442 16 C -0.163 4.163 17 C -0.027 4.027 18 C -0.174 4.174 19 C -0.155 4.155 20 C -0.033 4.033 21 C -0.180 4.180 22 C -0.099 4.099 23 C -0.191 4.191 24 O -0.363 6.363 25 Si 0.650 3.350 26 C -0.092 4.092 27 C -0.143 4.143 28 C -0.138 4.138 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.244 0.756 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.165 0.835 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.115 0.885 49 H 0.245 0.755 50 H -0.206 1.206 51 H -0.210 1.210 52 H 0.159 0.841 53 H 0.092 0.908 54 H 0.100 0.900 55 H 0.084 0.916 56 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.215 1.163 1.191 6.434 hybrid contribution 0.328 -0.987 1.431 1.769 sum -5.887 0.176 2.622 6.447 Atomic orbital electron populations 1.21819 0.90566 1.04211 1.03839 1.23228 0.97000 0.79537 1.02257 1.86517 1.24300 1.33237 1.83475 1.24444 0.80511 0.93463 0.70884 1.90665 1.61204 1.44619 1.46898 1.21265 0.96445 0.88100 1.03673 0.85307 1.21520 1.02057 0.95802 0.95006 1.21643 0.93423 0.95751 1.04139 1.21423 0.96456 0.93729 0.99910 0.90270 1.21446 0.99942 0.92509 0.85743 1.45916 1.55599 1.13895 1.21564 1.18384 0.79033 0.81750 0.86301 1.90731 1.40093 1.66082 1.47277 1.19676 1.03642 0.96903 0.96112 1.20238 0.94798 0.92476 0.95225 1.21019 0.98199 1.00671 0.97472 1.21200 0.99632 1.01270 0.93365 1.20274 0.93322 0.93476 0.96269 1.21000 1.03061 1.00736 0.93247 1.19210 1.00712 0.95098 0.94885 1.24906 0.96975 1.06414 0.90758 1.86572 1.38546 1.78018 1.33151 0.94359 0.78674 0.76523 0.85448 1.21258 0.95682 0.99123 0.93172 1.21455 1.01032 0.93885 0.97894 1.21375 0.91759 0.97763 1.02877 0.91166 0.88723 0.91083 0.91660 0.91658 0.91894 0.89349 0.90109 0.89888 0.92150 0.90948 0.75566 0.90810 0.90866 0.90556 0.83496 0.89088 0.90414 0.90644 0.88549 0.75494 1.20607 1.20984 0.84119 0.90760 0.89961 0.91624 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.29 71.98 0.74 1.32 16 2 C 0.05 0.06 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.10 10.12 -51.41 -0.52 -1.62 16 4 C 0.46 2.03 7.25 71.23 0.52 2.55 16 5 O -0.54 -6.19 15.73 22.00 0.35 -5.84 16 6 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 8 C -0.11 0.58 5.13 30.59 0.16 0.73 16 9 C -0.11 0.84 5.08 30.59 0.16 1.00 16 10 C -0.10 0.52 2.23 -10.79 -0.02 0.50 16 11 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 12 C 0.13 -0.21 5.06 86.38 0.44 0.22 16 13 N -0.72 0.07 5.23 -465.97 -2.44 -2.37 16 14 C 0.56 3.45 7.70 86.79 0.67 4.12 16 15 O -0.56 -6.95 13.34 -3.86 -0.05 -7.00 16 16 C -0.16 -0.77 5.87 -20.09 -0.12 -0.89 16 17 C -0.03 -0.14 5.91 -19.61 -0.12 -0.25 16 18 C -0.12 -0.63 8.73 71.24 0.62 -0.01 16 19 C -0.14 -0.29 9.31 22.23 0.21 -0.09 16 20 C -0.03 -0.04 5.89 -19.81 -0.12 -0.16 16 21 C -0.12 0.36 9.32 71.24 0.66 1.02 16 22 C -0.10 -0.08 5.29 -19.90 -0.11 -0.19 16 23 C -0.08 0.26 1.87 71.24 0.13 0.39 16 24 O -0.55 0.46 11.89 -148.98 -1.77 -1.32 16 25 Si 0.75 -3.77 30.18 68.60 2.07 -1.70 16 26 C -0.07 -0.08 8.13 22.53 0.18 0.10 16 27 C -0.10 0.51 5.20 30.58 0.16 0.67 16 28 C -0.10 0.14 4.49 30.58 0.14 0.28 16 29 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 33 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 35 H 0.09 -0.56 8.11 -2.39 -0.02 -0.58 16 36 H 0.08 -0.75 7.18 -2.39 -0.02 -0.77 16 37 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.41 -1.71 5.73 -92.70 -0.53 -2.24 16 41 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.13 8.04 -2.38 -0.02 0.11 16 43 H 0.08 0.74 5.85 -2.39 -0.01 0.72 16 44 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 45 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.08 -0.17 6.18 -2.39 -0.01 -0.18 16 47 H 0.07 -0.27 8.08 -2.39 -0.02 -0.29 16 48 H 0.10 -0.68 7.38 -2.39 -0.02 -0.70 16 49 H 0.39 -3.39 8.74 -74.06 -0.65 -4.03 16 50 H -0.28 0.19 6.75 99.48 0.67 0.86 16 51 H -0.28 0.19 7.11 99.48 0.71 0.90 16 52 H 0.14 -0.46 3.28 -2.91 -0.01 -0.47 16 53 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 54 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 55 H 0.07 0.05 8.10 -2.39 -0.02 0.03 16 56 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 Total: 0.00 -21.05 436.90 2.07 -18.98 By element: Atomic # 1 Polarization: -10.84 SS G_CDS: -0.28 Total: -11.12 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 4.72 Total: 11.98 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -2.44 Total: -2.37 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -2.00 Total: -15.78 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.07 Total: -1.70 kcal Total: -21.05 2.07 -18.98 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_9599494.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.642 kcal (2) G-P(sol) polarization free energy of solvation -21.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds