Wall clock time and date at job start Sun Mar 7 2021 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45203 * 109.47184 * 2 1 4 4 C 1.34230 * 117.00071 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99718 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47445 * 60.00613 * 6 4 3 8 8 C 1.53003 * 109.47001 * 180.02562 * 6 4 3 9 9 C 1.53004 * 109.47352 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46855 * 299.99714 * 9 8 6 11 11 H 1.08999 * 109.47309 * 300.00309 * 10 9 8 12 12 C 1.53002 * 109.47251 * 179.97438 * 10 9 8 13 13 N 1.46494 * 109.47001 * 175.00022 * 12 10 9 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 10 15 15 O 1.21623 * 120.00016 * 0.02562 * 14 13 12 16 16 C 1.47265 * 119.99864 * 179.97438 * 14 13 12 17 17 C 1.36766 * 126.94034 * 179.70540 * 16 14 13 18 18 C 1.50695 * 125.80481 * 359.97438 * 17 16 14 19 19 N 1.34659 * 108.39524 * 179.87439 * 17 16 14 20 20 C 1.36451 * 110.29617 * 0.41140 * 19 17 16 21 21 C 1.50708 * 125.56676 * 179.72758 * 20 19 17 22 22 O 1.42895 * 109.47265 * 65.00032 * 21 20 19 23 23 Si 1.86304 * 109.46679 * 184.99938 * 21 20 19 24 24 C 1.34478 * 108.85747 * 359.74948 * 20 19 17 25 25 C 1.53003 * 109.46907 * 60.00014 * 10 9 8 26 26 C 1.53001 * 109.47175 * 300.00154 * 6 4 3 27 27 H 1.09001 * 109.47216 * 59.99992 * 1 2 3 28 28 H 1.09000 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47571 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.47571 * 240.00186 * 2 1 3 31 31 H 1.09001 * 109.47216 * 120.00008 * 2 1 3 32 32 H 1.08993 * 109.47263 * 59.99592 * 8 6 4 33 33 H 1.09000 * 109.46849 * 299.99540 * 8 6 4 34 34 H 1.08994 * 109.47246 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46768 * 59.99279 * 9 8 6 36 36 H 1.09005 * 109.46767 * 55.00088 * 12 10 9 37 37 H 1.09002 * 109.47113 * 295.00428 * 12 10 9 38 38 H 0.96995 * 120.00292 * 0.27801 * 13 12 10 39 39 H 1.08998 * 109.47202 * 89.99210 * 18 17 16 40 40 H 1.08995 * 109.47397 * 210.00135 * 18 17 16 41 41 H 1.09006 * 109.47066 * 329.99241 * 18 17 16 42 42 H 0.97003 * 124.85351 * 180.13613 * 19 17 16 43 43 H 1.09000 * 109.47043 * 304.99342 * 21 20 19 44 44 H 0.96707 * 113.99475 * 59.99645 * 22 21 20 45 45 H 1.48500 * 110.00066 * 58.68182 * 23 21 20 46 46 H 1.48493 * 110.00107 * 179.97438 * 23 21 20 47 47 H 1.07999 * 126.83131 * 179.97438 * 24 20 19 48 48 H 1.09000 * 109.47591 * 60.00296 * 25 10 9 49 49 H 1.09006 * 109.47071 * 179.97438 * 25 10 9 50 50 H 1.09004 * 109.47446 * 299.99834 * 26 6 4 51 51 H 1.08999 * 109.47230 * 60.00150 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.5844 3.4693 0.8912 8 6 5.4485 2.8574 0.0010 9 6 6.0333 4.2713 0.0023 10 6 5.5618 5.0193 -1.2463 11 1 5.8977 4.4879 -2.1367 12 6 6.1460 6.4334 -1.2448 13 7 5.7933 7.1088 -2.4960 14 6 6.2036 8.3733 -2.7180 15 8 6.8671 8.9534 -1.8799 16 6 5.8495 9.0521 -3.9760 17 6 6.1832 10.3262 -4.3447 18 6 6.9896 11.2989 -3.5235 19 7 5.6704 10.5629 -5.5671 20 6 4.9913 9.4677 -6.0157 21 6 4.2781 9.3599 -7.3390 22 8 5.2308 9.4362 -8.4012 23 14 3.3777 7.7313 -7.4280 24 6 5.0621 8.5006 -5.0840 25 6 4.0338 5.0993 -1.2462 26 6 3.4494 3.6848 -1.2480 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7844 2.3257 -0.8891 33 1 5.7845 2.3249 0.8908 34 1 7.1218 4.2142 0.0018 35 1 5.6973 4.8026 0.8927 36 1 7.2310 6.3781 -1.1551 37 1 5.7399 6.9934 -0.4025 38 1 5.2614 6.6473 -3.1630 39 1 8.0478 11.1821 -3.7576 40 1 6.6764 12.3169 -3.7550 41 1 6.8280 11.1012 -2.4638 42 1 5.7663 11.3947 -6.0569 43 1 3.5623 10.1764 -7.4335 44 1 5.9001 8.7384 -8.3800 45 1 2.4063 7.6262 -6.3098 46 1 2.6697 7.6128 -8.7279 47 1 4.6258 7.5143 -5.1402 48 1 3.6978 5.6307 -0.3558 49 1 3.6979 5.6326 -2.1355 50 1 3.7857 3.1530 -2.1381 51 1 2.3609 3.7418 -1.2484 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_9865296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:18:29 Heat of formation + Delta-G solvation = -137.232864 kcal Electronic energy + Delta-G solvation = -31120.433057 eV Core-core repulsion = 26792.886611 eV Total energy + Delta-G solvation = -4327.546446 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.43854 -41.79442 -40.38066 -39.27420 -37.73815 -37.66501 -35.80705 -33.23691 -32.84293 -32.46526 -31.77548 -31.58304 -29.04916 -27.63056 -25.53972 -24.60995 -23.71601 -23.44713 -22.65027 -21.61433 -21.34957 -20.90674 -20.33570 -19.06735 -18.70136 -17.64669 -17.58590 -17.22952 -17.00396 -16.71649 -16.53026 -16.18432 -15.74858 -15.31850 -15.31053 -15.13996 -14.90164 -14.75754 -14.66788 -14.58387 -14.42111 -14.04208 -13.88291 -13.75491 -13.60483 -13.44757 -13.38332 -13.18832 -12.95311 -12.91136 -12.84367 -12.54440 -12.19925 -12.11808 -12.06011 -12.05427 -11.79906 -11.55935 -11.39981 -11.16161 -11.05766 -10.83038 -10.63674 -10.10574 -9.78216 -9.15574 -4.93005 0.73230 1.13253 1.22326 1.27788 1.66944 1.72860 1.94708 2.18927 2.56140 2.57130 3.47027 3.50828 3.59040 3.64592 3.71495 3.89358 3.92058 3.97119 4.03818 4.05609 4.11858 4.20537 4.23449 4.31064 4.34869 4.40031 4.44421 4.51331 4.53375 4.55741 4.68329 4.73343 4.73951 4.79815 4.85402 4.89013 4.90040 4.99323 5.03134 5.13647 5.14056 5.16172 5.19202 5.23733 5.27303 5.38886 5.46084 5.52231 5.62182 5.70384 5.89736 6.45434 6.69138 6.70318 6.72479 7.40994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.077 4.077 7 H 0.123 0.877 8 C -0.099 4.099 9 C -0.106 4.106 10 C -0.092 4.092 11 H 0.090 0.910 12 C 0.129 3.871 13 N -0.713 5.713 14 C 0.586 3.414 15 O -0.590 6.590 16 C -0.258 4.258 17 C 0.107 3.893 18 C -0.095 4.095 19 N -0.531 5.531 20 C -0.016 4.016 21 C -0.056 4.056 22 O -0.559 6.559 23 Si 0.805 3.195 24 C -0.155 4.155 25 C -0.110 4.110 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.412 0.588 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.426 0.574 43 H 0.108 0.892 44 H 0.398 0.602 45 H -0.276 1.276 46 H -0.299 1.299 47 H 0.176 0.824 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -0.944 -2.793 4.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.096 4.096 7 H 0.141 0.859 8 C -0.136 4.136 9 C -0.144 4.144 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.005 3.995 13 N -0.365 5.365 14 C 0.376 3.624 15 O -0.472 6.472 16 C -0.267 4.267 17 C -0.013 4.013 18 C -0.152 4.152 19 N -0.127 5.127 20 C -0.126 4.126 21 C -0.165 4.165 22 O -0.367 6.367 23 Si 0.708 3.292 24 C -0.179 4.179 25 C -0.148 4.148 26 C -0.142 4.142 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.265 0.735 43 H 0.126 0.874 44 H 0.248 0.752 45 H -0.202 1.202 46 H -0.227 1.227 47 H 0.193 0.807 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.090 0.910 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.291 -0.656 -2.537 4.206 hybrid contribution -0.033 0.579 -0.184 0.608 sum -3.324 -0.077 -2.721 4.296 Atomic orbital electron populations 1.21817 0.90724 1.04198 1.03746 1.23222 0.96887 0.79537 1.02342 1.86521 1.24421 1.33267 1.83506 1.24432 0.80456 0.93454 0.70901 1.90665 1.61144 1.44561 1.46848 1.21271 0.96668 0.88077 1.03568 0.85915 1.21379 0.91490 0.97727 1.03039 1.21474 1.01121 0.93910 0.97932 1.21388 0.95960 0.93636 1.00055 0.89195 1.21349 0.99724 0.92494 0.85923 1.45663 1.55777 1.13779 1.21292 1.17562 0.78178 0.81466 0.85191 1.90735 1.41834 1.66588 1.48053 1.20123 1.12885 0.96114 0.97618 1.20597 0.98181 0.95924 0.86562 1.20562 0.98746 0.96382 0.99515 1.41619 1.41477 1.15270 1.14376 1.20994 1.04114 0.88670 0.98805 1.25055 0.95272 1.14125 0.82014 1.86472 1.44772 1.57575 1.47837 0.93194 0.80340 0.79012 0.76654 1.22015 1.03309 0.99948 0.92644 1.21617 0.93843 0.95617 1.03677 1.21511 1.01677 0.95788 0.95207 0.91112 0.88684 0.91342 0.91428 0.91694 0.91591 0.91844 0.90591 0.90669 0.92330 0.92252 0.75061 0.90012 0.89818 0.89942 0.73525 0.87420 0.75195 1.20250 1.22666 0.80719 0.91023 0.90018 0.91046 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.56 10.29 71.98 0.74 1.30 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.13 10.12 -51.41 -0.52 -1.65 16 4 C 0.46 1.91 7.26 71.24 0.52 2.43 16 5 O -0.54 -5.84 15.73 21.98 0.35 -5.50 16 6 C -0.08 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 8 C -0.10 0.20 4.49 30.60 0.14 0.34 16 9 C -0.11 0.55 5.20 30.60 0.16 0.70 16 10 C -0.09 0.58 2.23 -10.79 -0.02 0.56 16 11 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 12 C 0.13 -0.22 5.06 86.38 0.44 0.22 16 13 N -0.71 0.77 5.28 -466.52 -2.46 -1.69 16 14 C 0.59 3.56 7.81 86.62 0.68 4.24 16 15 O -0.59 -8.00 14.82 -4.11 -0.06 -8.06 16 16 C -0.26 -0.85 6.29 -19.04 -0.12 -0.97 16 17 C 0.11 0.27 7.17 41.78 0.30 0.57 16 18 C -0.09 -0.13 9.88 71.23 0.70 0.57 16 19 N -0.53 0.76 5.90 -171.07 -1.01 -0.25 16 20 C -0.02 0.04 6.47 40.98 0.27 0.30 16 21 C -0.06 0.23 3.08 71.24 0.22 0.45 16 22 O -0.56 1.82 12.88 -148.98 -1.92 -0.10 16 23 Si 0.80 -5.05 30.58 68.60 2.10 -2.95 16 24 C -0.16 0.38 9.03 23.62 0.21 0.60 16 25 C -0.11 0.82 5.08 30.61 0.16 0.98 16 26 C -0.10 0.61 5.14 30.61 0.16 0.76 16 27 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 31 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 32 H 0.07 -0.01 8.10 -2.39 -0.02 -0.03 16 33 H 0.06 0.03 8.10 -2.39 -0.02 0.01 16 34 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.41 -2.79 6.77 -92.71 -0.63 -3.42 16 39 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.08 0.51 6.47 -2.38 -0.02 0.50 16 42 H 0.43 -2.17 8.96 -92.71 -0.83 -3.00 16 43 H 0.11 -0.36 7.96 -2.39 -0.02 -0.38 16 44 H 0.40 -4.22 8.70 -74.05 -0.64 -4.87 16 45 H -0.28 0.57 7.11 99.48 0.71 1.28 16 46 H -0.30 -0.46 7.11 99.48 0.71 0.25 16 47 H 0.18 -1.58 5.88 -2.91 -0.02 -1.60 16 48 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 49 H 0.08 -0.75 7.17 -2.38 -0.02 -0.77 16 50 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 51 H 0.08 -0.47 8.11 -2.39 -0.02 -0.49 16 Total: 0.00 -23.61 411.16 0.32 -23.29 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -1.11 Total: -16.79 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.95 Total: 13.70 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -3.47 Total: -1.94 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -2.15 Total: -15.31 kcal Atomic # 14 Polarization: -5.05 SS G_CDS: 2.10 Total: -2.95 kcal Total: -23.61 0.32 -23.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_9865296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.943 kcal (2) G-P(sol) polarization free energy of solvation -23.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds