Wall clock time and date at job start Sun Mar 7 2021 02:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47230 * 2 1 4 4 C 1.35891 * 116.99988 * 275.32525 * 3 2 1 5 5 C 1.38738 * 120.05912 * 5.08370 * 4 3 2 6 6 C 1.38143 * 119.94453 * 179.74284 * 5 4 3 7 7 C 1.38273 * 120.05575 * 0.50834 * 6 5 4 8 8 C 1.50697 * 119.94386 * 179.74762 * 7 6 5 9 9 O 1.42900 * 109.47397 * 120.02060 * 8 7 6 10 10 Si 1.86299 * 109.47046 * 0.02562 * 8 7 6 11 11 C 1.38266 * 120.11071 * 359.76778 * 7 6 5 12 12 C 1.38143 * 120.05277 * 359.97438 * 11 7 6 13 13 C 1.50696 * 109.47527 * 120.00283 * 2 1 3 14 14 O 1.21281 * 120.00444 * 244.99988 * 13 2 1 15 15 N 1.34781 * 119.99857 * 64.99498 * 13 2 1 16 16 C 1.46500 * 119.99815 * 180.02562 * 15 13 2 17 17 H 1.09003 * 112.91080 * 23.75625 * 16 15 13 18 18 C 1.53789 * 113.61245 * 155.00200 * 16 15 13 19 19 C 1.53782 * 87.17076 * 140.02292 * 18 16 15 20 20 H 1.09004 * 113.61356 * 89.07643 * 19 18 16 21 21 C 1.53006 * 113.61422 * 219.97592 * 19 18 16 22 22 N 1.46495 * 109.46879 * 185.00432 * 21 19 18 23 23 C 1.34946 * 126.03882 * 124.71964 * 22 21 19 24 24 C 1.35316 * 107.74817 * 179.83247 * 23 22 21 25 25 C 1.39870 * 107.91792 * 0.42780 * 24 23 22 26 26 N 1.30835 * 108.20248 * 359.73217 * 25 24 23 27 27 C 1.53785 * 87.08210 * 334.52545 * 19 18 16 28 28 H 1.08998 * 109.47059 * 299.99603 * 1 2 3 29 29 H 1.08997 * 109.47414 * 59.99768 * 1 2 3 30 30 H 1.09006 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47059 * 240.00397 * 2 1 3 32 32 H 1.07992 * 120.02493 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.97519 * 180.23641 * 6 5 4 34 34 H 1.08998 * 109.47162 * 240.02509 * 8 7 6 35 35 H 0.96699 * 113.99819 * 179.97438 * 9 8 7 36 36 H 1.48503 * 110.00065 * 60.00504 * 10 8 7 37 37 H 1.48507 * 110.00011 * 181.31948 * 10 8 7 38 38 H 1.07991 * 119.97171 * 179.97438 * 11 7 6 39 39 H 1.08004 * 120.02219 * 180.02562 * 12 11 7 40 40 H 0.96999 * 120.00376 * 0.02562 * 15 13 2 41 41 H 1.08999 * 113.61218 * 25.43665 * 18 16 15 42 42 H 1.08994 * 113.61202 * 254.61275 * 18 16 15 43 43 H 1.08997 * 109.46748 * 305.00387 * 21 19 18 44 44 H 1.08996 * 109.46706 * 64.99996 * 21 19 18 45 45 H 1.08004 * 126.12249 * 359.97438 * 23 22 21 46 46 H 1.07997 * 126.04270 * 180.15551 * 24 23 22 47 47 H 1.07999 * 125.89578 * 179.76446 * 25 24 23 48 48 H 1.08999 * 113.61105 * 139.97961 * 27 19 18 49 49 H 1.08995 * 113.61267 * 270.79682 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1060 1.9664 -1.2056 5 6 1.6544 1.3304 -2.3529 6 6 1.7520 1.9641 -3.5765 7 6 2.3089 3.2269 -3.6598 8 6 2.4194 3.9136 -4.9967 9 8 1.6854 5.1393 -4.9649 10 14 1.7219 2.8065 -6.3229 11 6 2.7650 3.8606 -2.5187 12 6 2.6648 3.2333 -1.2920 13 6 2.0324 -0.7104 1.2304 14 8 2.6530 -0.0980 2.0734 15 7 1.7919 -2.0265 1.3940 16 6 2.2798 -2.7170 2.5904 17 1 2.4415 -2.0440 3.4325 18 6 1.4674 -3.9717 2.9519 19 6 2.8054 -4.6444 3.3013 20 1 3.1106 -4.4974 4.3373 21 6 2.8910 -6.1060 2.8568 22 7 4.1460 -6.6896 3.3370 23 6 4.2669 -7.8022 4.0910 24 6 5.5854 -8.0062 4.3168 25 6 6.2940 -6.9776 3.6872 26 7 5.4322 -6.1879 3.0995 27 6 3.4656 -3.6622 2.3193 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.2234 0.3422 -2.2889 33 1 1.3971 1.4710 -4.4694 34 1 3.4672 4.1230 -5.2122 35 1 1.7129 5.6358 -5.7942 36 1 0.2937 2.5137 -6.0408 37 1 1.8539 3.4590 -7.6505 38 1 3.2000 4.8467 -2.5865 39 1 3.0208 3.7289 -0.4009 40 1 1.2957 -2.5164 0.7197 41 1 0.9606 -4.4243 2.0995 42 1 0.8105 -3.8341 3.8107 43 1 2.0499 -6.6616 3.2714 44 1 2.8594 -6.1572 1.7686 45 1 3.4566 -8.4205 4.4481 46 1 6.0146 -8.8171 4.8865 47 1 7.3672 -6.8567 3.6859 48 1 4.4225 -3.2735 2.6677 49 1 3.5065 -4.0308 1.2944 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:35 Heat of formation + Delta-G solvation = 38.234680 kcal Electronic energy + Delta-G solvation = -30549.285494 eV Core-core repulsion = 26253.463370 eV Total energy + Delta-G solvation = -4295.822124 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05960 -41.81345 -40.93421 -39.71944 -38.83042 -37.35526 -35.32803 -33.91477 -32.92400 -31.89229 -31.60010 -30.91561 -28.51778 -26.75878 -26.67948 -25.68622 -24.40408 -23.62816 -22.32621 -21.89600 -21.57098 -21.48044 -20.59422 -19.51653 -18.62906 -18.45451 -18.15625 -17.48739 -16.92770 -16.79014 -16.70810 -16.47673 -15.83025 -15.79253 -15.68529 -15.49475 -15.16450 -15.01580 -14.81942 -14.58318 -14.28207 -14.06799 -13.96938 -13.77893 -13.55608 -13.48331 -13.44757 -13.42154 -13.34537 -12.97608 -12.89718 -12.47287 -12.23179 -12.11397 -11.93855 -11.84806 -11.70660 -11.60675 -11.35472 -10.90579 -10.48472 -10.31836 -10.13940 -10.05753 -9.46579 -9.22702 -4.92184 0.24545 0.28346 1.03158 1.31787 1.37891 1.49658 1.61584 1.71793 1.95953 1.97688 2.49366 2.59601 3.34912 3.39483 3.42231 3.47482 3.63880 3.69261 3.74226 3.78387 3.82402 3.86204 3.96825 4.00287 4.10906 4.22866 4.26525 4.32183 4.34995 4.40416 4.42419 4.58664 4.61521 4.70011 4.71005 4.73073 4.79263 4.82416 4.94013 4.94462 4.99052 5.05835 5.08218 5.16138 5.17276 5.18716 5.22671 5.48244 5.50748 5.67496 5.77532 6.22456 6.24956 6.45356 6.59858 6.81602 7.09807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 O -0.315 6.315 4 C 0.120 3.880 5 C -0.201 4.201 6 C -0.076 4.076 7 C -0.124 4.124 8 C -0.086 4.086 9 O -0.560 6.560 10 Si 0.768 3.232 11 C -0.061 4.061 12 C -0.168 4.168 13 C 0.515 3.485 14 O -0.574 6.574 15 N -0.694 5.694 16 C 0.115 3.885 17 H 0.086 0.914 18 C -0.111 4.111 19 C -0.113 4.113 20 H 0.080 0.920 21 C 0.139 3.861 22 N -0.376 5.376 23 C 0.053 3.947 24 C -0.294 4.294 25 C 0.024 3.976 26 N -0.331 5.331 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.394 0.606 36 H -0.294 1.294 37 H -0.289 1.289 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.422 0.578 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.208 0.792 46 H 0.159 0.841 47 H 0.192 0.808 48 H 0.041 0.959 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 -9.115 -4.345 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 O -0.228 6.228 4 C 0.075 3.925 5 C -0.219 4.219 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.194 4.194 9 O -0.370 6.370 10 Si 0.673 3.327 11 C -0.079 4.079 12 C -0.186 4.186 13 C 0.301 3.699 14 O -0.453 6.453 15 N -0.347 5.347 16 C 0.010 3.990 17 H 0.104 0.896 18 C -0.149 4.149 19 C -0.133 4.133 20 H 0.098 0.902 21 C 0.019 3.981 22 N -0.159 5.159 23 C -0.094 4.094 24 C -0.323 4.323 25 C -0.161 4.161 26 N -0.154 5.154 27 C -0.173 4.173 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.109 0.891 35 H 0.244 0.756 36 H -0.221 1.221 37 H -0.216 1.216 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.261 0.739 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.224 0.776 46 H 0.176 0.824 47 H 0.209 0.791 48 H 0.060 0.940 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.348 -7.777 -4.333 10.386 hybrid contribution 0.290 0.780 0.382 0.916 sum -5.058 -6.997 -3.951 9.495 Atomic orbital electron populations 1.22375 0.90404 1.05949 1.04223 1.22476 0.97234 0.82042 0.97912 1.86195 1.81469 1.27208 1.27948 1.19227 0.95852 0.92975 0.84464 1.21471 1.06324 1.02812 0.91289 1.21018 0.96396 0.93945 0.97948 1.19461 1.02741 0.95608 0.94608 1.25040 1.00572 0.91698 1.02083 1.86549 1.74837 1.34494 1.41149 0.94220 0.80193 0.85224 0.73063 1.20916 0.96868 0.99342 0.90742 1.20623 1.04464 0.94471 0.99080 1.20628 0.78864 0.83025 0.87365 1.90753 1.41674 1.67266 1.45569 1.45663 1.57210 1.07761 1.24081 1.22552 0.96087 0.92406 0.87977 0.89585 1.23303 0.95241 0.92507 1.03888 1.22496 0.98147 0.93143 0.99465 0.90188 1.22041 0.81422 0.93514 1.01120 1.49009 1.05998 1.20512 1.40382 1.23202 0.99869 0.90797 0.95486 1.21860 0.93163 1.05106 1.12213 1.24304 1.00762 0.93869 0.97162 1.77325 0.88829 1.23835 1.25365 1.23475 0.97209 0.96221 1.00412 0.92460 0.89657 0.86689 0.85124 0.81757 0.82961 0.89063 0.75581 1.22113 1.21622 0.84781 0.85555 0.73876 0.85759 0.89238 0.85023 0.88600 0.77566 0.82357 0.79145 0.94021 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.97 9.12 71.98 0.66 1.63 16 2 C 0.06 -0.02 2.64 29.84 0.08 0.05 16 3 O -0.31 -2.69 9.34 -73.34 -0.68 -3.37 16 4 C 0.12 0.73 6.60 22.51 0.15 0.88 16 5 C -0.20 0.00 8.24 22.37 0.18 0.18 16 6 C -0.08 -0.01 8.66 22.26 0.19 0.19 16 7 C -0.12 -0.40 5.42 -19.85 -0.11 -0.51 16 8 C -0.09 0.00 2.81 71.23 0.20 0.20 16 9 O -0.56 -1.69 12.74 -148.98 -1.90 -3.59 16 10 Si 0.77 -2.13 29.78 68.60 2.04 -0.09 16 11 C -0.06 -0.34 9.60 22.25 0.21 -0.13 16 12 C -0.17 -1.28 9.99 22.37 0.22 -1.05 16 13 C 0.52 2.35 7.18 87.66 0.63 2.98 16 14 O -0.57 -9.70 16.11 15.95 0.26 -9.45 16 15 N -0.69 2.82 5.32 -439.58 -2.34 0.48 16 16 C 0.11 -0.20 4.25 45.61 0.19 -0.01 16 17 H 0.09 0.44 7.47 -2.39 -0.02 0.43 16 18 C -0.11 1.06 7.39 31.12 0.23 1.29 16 19 C -0.11 0.53 3.83 -10.26 -0.04 0.49 16 20 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 21 C 0.14 -0.94 6.35 86.38 0.55 -0.40 16 22 N -0.38 -0.36 3.68 -348.07 -1.28 -1.64 16 23 C 0.05 -0.07 11.45 83.54 0.96 0.88 16 24 C -0.29 -0.47 10.80 21.99 0.24 -0.23 16 25 C 0.02 0.12 12.03 85.24 1.02 1.14 16 26 N -0.33 -2.46 12.42 -57.02 -0.71 -3.17 16 27 C -0.13 0.06 7.44 31.21 0.23 0.29 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.08 -0.54 6.91 -2.39 -0.02 -0.55 16 30 H 0.11 -1.50 7.93 -2.38 -0.02 -1.52 16 31 H 0.13 -0.93 6.31 -2.39 -0.02 -0.94 16 32 H 0.17 -1.20 5.43 -2.91 -0.02 -1.22 16 33 H 0.15 -0.81 4.87 -2.91 -0.01 -0.82 16 34 H 0.09 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.39 -2.00 8.74 -74.06 -0.65 -2.65 16 36 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 37 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 38 H 0.13 0.54 8.06 -2.92 -0.02 0.52 16 39 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.42 -5.40 8.51 -92.71 -0.79 -6.18 16 41 H 0.12 -1.93 8.08 -2.39 -0.02 -1.95 16 42 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.13 -1.76 8.07 -2.39 -0.02 -1.78 16 44 H 0.10 -0.81 7.84 -2.39 -0.02 -0.82 16 45 H 0.21 -2.00 8.06 -2.91 -0.02 -2.02 16 46 H 0.16 -0.33 8.06 -2.91 -0.02 -0.35 16 47 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 48 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.10 -0.24 7.89 -2.39 -0.02 -0.26 16 Total: 0.00 -34.03 406.26 0.78 -33.24 By element: Atomic # 1 Polarization: -19.88 SS G_CDS: -0.41 Total: -20.30 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.80 Total: 7.88 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -4.33 Total: -4.33 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -2.33 Total: -16.41 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: 2.04 Total: -0.09 kcal Total: -34.03 0.78 -33.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.478 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds