Wall clock time and date at job start Sun Mar 7 2021 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47221 * 2 1 4 4 C 1.50698 * 109.47045 * 120.00359 * 2 1 3 5 5 C 1.35452 * 126.06509 * 245.04292 * 4 2 1 6 6 N 1.35533 * 108.87282 * 179.69355 * 5 4 2 7 7 C 1.37649 * 108.64127 * 0.43538 * 6 5 4 8 8 C 1.46680 * 126.23564 * 179.82888 * 7 6 5 9 9 O 1.21693 * 120.00596 * 179.69118 * 8 7 6 10 10 N 1.34783 * 119.99517 * 359.68910 * 8 7 6 11 11 C 1.46503 * 119.99857 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84839 * 23.80886 * 11 10 8 13 13 C 1.53779 * 113.61406 * 155.00353 * 11 10 8 14 14 C 1.53776 * 87.08234 * 139.98351 * 13 11 10 15 15 H 1.09000 * 113.61460 * 89.19991 * 14 13 11 16 16 C 1.53004 * 113.61565 * 220.01978 * 14 13 11 17 17 N 1.46494 * 109.47106 * 184.99762 * 16 14 13 18 18 C 1.34954 * 126.03475 * 124.99860 * 17 16 14 19 19 C 1.35316 * 107.74368 * 179.73518 * 18 17 16 20 20 C 1.39868 * 107.92272 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20148 * 359.97438 * 20 19 18 22 22 C 1.53780 * 113.61546 * 252.50025 * 11 10 8 23 23 C 1.37873 * 107.53291 * 359.56862 * 7 6 5 24 24 H 0.96691 * 114.00275 * 300.00257 * 1 2 3 25 25 H 1.09004 * 109.46892 * 239.99661 * 2 1 3 26 26 H 1.48493 * 109.99984 * 178.68114 * 3 2 1 27 27 H 1.48498 * 109.99967 * 300.00194 * 3 2 1 28 28 H 1.08000 * 125.56330 * 359.91946 * 5 4 2 29 29 H 0.96998 * 125.67995 * 180.29566 * 6 5 4 30 30 H 0.97001 * 120.00238 * 0.02562 * 10 8 7 31 31 H 1.08995 * 113.61433 * 25.43135 * 13 11 10 32 32 H 1.09004 * 113.69022 * 254.54305 * 13 11 10 33 33 H 1.08999 * 109.46666 * 64.99595 * 16 14 13 34 34 H 1.09007 * 109.46675 * 304.99967 * 16 14 13 35 35 H 1.07999 * 126.12426 * 359.75442 * 18 17 16 36 36 H 1.07999 * 126.03437 * 179.97438 * 19 18 17 37 37 H 1.08001 * 125.89990 * 179.97438 * 20 19 18 38 38 H 1.09000 * 113.61345 * 105.47179 * 22 11 10 39 39 H 1.08996 * 113.61639 * 334.56880 * 22 11 10 40 40 H 1.08005 * 126.45515 * 180.22688 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6327 -0.1498 2.2445 6 7 2.8990 -1.1014 3.1721 7 6 2.3679 -2.2961 2.7417 8 6 2.4357 -3.5798 3.4483 9 8 1.9192 -4.5693 2.9636 10 7 3.0703 -3.6633 4.6344 11 6 3.1377 -4.9452 5.3405 12 1 3.0284 -5.8013 4.6747 13 6 4.3352 -5.0586 6.2985 14 6 3.3837 -5.7645 7.2788 15 1 3.3419 -6.8454 7.1449 16 6 3.5920 -5.3542 8.7380 17 7 2.7273 -6.1627 9.6008 18 6 3.1286 -6.9106 10.6501 19 6 2.0310 -7.4945 11.1841 20 6 0.9210 -7.0902 10.4353 21 7 1.3372 -6.2917 9.4861 22 6 2.2366 -5.0112 6.5849 23 6 1.7553 -2.0653 1.5283 24 1 -0.3933 0.4417 0.7649 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7702 0.0321 27 1 1.5615 2.4679 -1.2085 28 1 2.9280 0.8873 2.3058 29 1 3.3850 -0.9640 4.0002 30 1 3.4818 -2.8745 5.0210 31 1 4.6986 -4.0964 6.6591 32 1 5.1341 -5.7004 5.9268 33 1 3.3420 -4.3001 8.8581 34 1 4.6340 -5.5143 9.0151 35 1 4.1439 -7.0226 11.0008 36 1 2.0150 -8.1566 12.0373 37 1 -0.1029 -7.3861 10.6104 38 1 1.3402 -5.6151 6.4433 39 1 2.0261 -4.0359 7.0238 40 1 1.2377 -2.7938 0.9218 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:39 Heat of formation + Delta-G solvation = 85.577942 kcal Electronic energy + Delta-G solvation = -23461.221497 eV Core-core repulsion = 19860.009991 eV Total energy + Delta-G solvation = -3601.211506 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51009 -42.03512 -40.91486 -39.33881 -37.64455 -35.29674 -33.65748 -32.48144 -31.00339 -30.71345 -28.56033 -26.76413 -26.57275 -24.96939 -23.22936 -21.91477 -21.53799 -21.44796 -20.97093 -20.59666 -19.76279 -18.27448 -17.52759 -17.40597 -16.85597 -16.51587 -16.41992 -15.93154 -15.77484 -15.51241 -15.22121 -14.91492 -14.84995 -14.57477 -14.41454 -13.96369 -13.94190 -13.56529 -13.54273 -13.50111 -13.43005 -12.98729 -12.30622 -12.26308 -11.97656 -11.88686 -11.63227 -11.42837 -11.27046 -10.34930 -10.33358 -10.25080 -9.96911 -9.48508 -9.30149 -4.93423 0.32864 1.01419 1.41409 1.51289 1.67928 1.73832 1.92736 1.96114 2.09573 2.14169 2.21388 3.31561 3.41049 3.62025 3.68508 3.72418 3.79304 3.96695 3.98063 4.09080 4.16741 4.20118 4.29299 4.35480 4.38610 4.63251 4.65534 4.69873 4.75892 4.79126 4.87962 4.91807 4.94569 5.01459 5.02362 5.12457 5.16845 5.45014 5.57191 5.70985 5.75846 6.20543 6.34007 6.51987 6.79803 6.90130 7.03344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.055 4.055 3 Si 0.806 3.194 4 C -0.229 4.229 5 C 0.064 3.936 6 N -0.513 5.513 7 C -0.070 4.070 8 C 0.586 3.414 9 O -0.581 6.581 10 N -0.701 5.701 11 C 0.114 3.886 12 H 0.089 0.911 13 C -0.112 4.112 14 C -0.111 4.111 15 H 0.081 0.919 16 C 0.139 3.861 17 N -0.377 5.377 18 C 0.053 3.947 19 C -0.294 4.294 20 C 0.024 3.976 21 N -0.332 5.332 22 C -0.133 4.133 23 C -0.108 4.108 24 H 0.393 0.607 25 H 0.090 0.910 26 H -0.273 1.273 27 H -0.311 1.311 28 H 0.220 0.780 29 H 0.438 0.562 30 H 0.414 0.586 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.208 0.792 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 6.660 8.249 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.164 4.164 3 Si 0.710 3.290 4 C -0.236 4.236 5 C -0.075 4.075 6 N -0.110 5.110 7 C -0.183 4.183 8 C 0.375 3.625 9 O -0.460 6.460 10 N -0.352 5.352 11 C 0.009 3.991 12 H 0.107 0.893 13 C -0.151 4.151 14 C -0.131 4.131 15 H 0.100 0.900 16 C 0.019 3.981 17 N -0.160 5.160 18 C -0.093 4.093 19 C -0.323 4.323 20 C -0.161 4.161 21 N -0.154 5.154 22 C -0.172 4.172 23 C -0.135 4.135 24 H 0.243 0.757 25 H 0.107 0.893 26 H -0.199 1.199 27 H -0.239 1.239 28 H 0.236 0.764 29 H 0.280 0.720 30 H 0.251 0.749 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.225 0.775 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.856 6.986 6.054 12.131 hybrid contribution -0.001 -1.436 0.577 1.548 sum 7.855 5.549 6.631 11.682 Atomic orbital electron populations 1.86457 1.18300 1.82417 1.50289 1.24786 0.84467 1.11436 0.95688 0.93916 0.77218 0.72931 0.84902 1.19961 1.09075 0.94274 1.00251 1.22411 1.00347 0.95939 0.88767 1.41831 1.43117 1.06243 1.19854 1.20080 1.11983 0.86780 0.99464 1.17357 0.77692 0.86527 0.80875 1.90849 1.48689 1.38153 1.68358 1.45659 1.56458 1.12845 1.20207 1.22540 0.98503 0.86285 0.91737 0.89299 1.23306 0.95566 1.02908 0.93285 1.22489 0.97470 0.99953 0.93178 0.90015 1.22030 0.93827 0.94745 0.87460 1.49005 1.05095 1.37385 1.24501 1.23204 1.01892 0.94263 0.89956 1.21865 0.91820 1.11222 1.07398 1.24313 1.01495 0.96574 0.93696 1.77328 0.90710 1.23099 1.24239 1.23415 0.97210 1.00988 0.95618 1.21230 1.00397 0.96741 0.95115 0.75702 0.89292 1.19906 1.23930 0.76391 0.72008 0.74871 0.85986 0.89165 0.88712 0.84988 0.77548 0.82307 0.79112 0.93854 0.88764 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.00 12.88 -148.98 -1.92 -3.92 16 2 C -0.05 -0.06 3.02 71.24 0.22 0.15 16 3 Si 0.81 -3.70 30.60 68.60 2.10 -1.60 16 4 C -0.23 -0.20 5.43 -20.12 -0.11 -0.31 16 5 C 0.06 -0.44 10.45 83.48 0.87 0.43 16 6 N -0.51 3.61 5.99 -183.62 -1.10 2.51 16 7 C -0.07 -0.22 7.06 40.35 0.28 0.06 16 8 C 0.59 3.99 7.79 86.45 0.67 4.66 16 9 O -0.58 -10.25 16.48 -4.33 -0.07 -10.32 16 10 N -0.70 1.65 5.35 -443.98 -2.38 -0.72 16 11 C 0.11 -0.10 4.24 45.52 0.19 0.09 16 12 H 0.09 0.51 7.46 -2.39 -0.02 0.49 16 13 C -0.11 1.01 7.39 31.12 0.23 1.24 16 14 C -0.11 0.49 3.83 -10.27 -0.04 0.45 16 15 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 16 C 0.14 -0.92 6.35 86.38 0.55 -0.37 16 17 N -0.38 -0.41 3.68 -348.06 -1.28 -1.69 16 18 C 0.05 -0.07 11.45 83.54 0.96 0.88 16 19 C -0.29 -0.47 10.80 21.99 0.24 -0.23 16 20 C 0.02 0.12 12.03 85.24 1.02 1.15 16 21 N -0.33 -2.51 12.42 -57.02 -0.71 -3.22 16 22 C -0.13 -0.01 7.43 31.12 0.23 0.22 16 23 C -0.11 -0.80 10.59 22.57 0.24 -0.56 16 24 H 0.39 -2.12 8.70 -74.06 -0.64 -2.77 16 25 H 0.09 0.39 7.96 -2.39 -0.02 0.38 16 26 H -0.27 0.51 7.11 99.48 0.71 1.22 16 27 H -0.31 -1.44 7.11 99.48 0.71 -0.73 16 28 H 0.22 -3.43 6.21 -2.91 -0.02 -3.45 16 29 H 0.44 -6.79 8.19 -92.71 -0.76 -7.55 16 30 H 0.41 -4.53 7.86 -92.71 -0.73 -5.26 16 31 H 0.12 -1.82 8.08 -2.39 -0.02 -1.84 16 32 H 0.09 -0.84 8.14 -2.38 -0.02 -0.86 16 33 H 0.09 -0.78 7.84 -2.39 -0.02 -0.79 16 34 H 0.13 -1.75 8.07 -2.38 -0.02 -1.77 16 35 H 0.21 -2.00 8.06 -2.91 -0.02 -2.02 16 36 H 0.16 -0.33 8.06 -2.91 -0.02 -0.36 16 37 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 38 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.09 -0.17 7.90 -2.39 -0.02 -0.19 16 40 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 Total: 0.00 -33.97 344.39 -0.80 -34.77 By element: Atomic # 1 Polarization: -22.68 SS G_CDS: -1.00 Total: -23.68 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.56 Total: 7.87 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -5.46 Total: -3.12 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.99 Total: -14.24 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.10 Total: -1.60 kcal Total: -33.97 -0.80 -34.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.346 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds