Wall clock time and date at job start Sun Mar 7 2021 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35537 * 125.67773 * 2 1 4 4 C 1.35450 * 108.87182 * 180.29979 * 3 2 1 5 5 C 1.50695 * 126.06690 * 179.69552 * 4 3 2 6 6 O 1.42904 * 109.46958 * 245.04030 * 5 4 3 7 7 Si 1.86300 * 109.47297 * 5.04066 * 5 4 3 8 8 C 1.39836 * 107.86258 * 359.73248 * 4 3 2 9 9 C 1.37651 * 125.67969 * 179.84068 * 2 1 3 10 10 C 1.46674 * 126.22909 * 359.96686 * 9 2 1 11 11 O 1.21690 * 120.00644 * 4.41519 * 10 9 2 12 12 N 1.34785 * 119.99713 * 184.42010 * 10 9 2 13 13 C 1.46495 * 119.99761 * 174.59220 * 12 10 9 14 14 H 1.08992 * 112.85303 * 335.92282 * 13 12 10 15 15 C 1.53787 * 113.61006 * 107.22902 * 13 12 10 16 16 C 1.53783 * 87.08072 * 139.97827 * 15 13 12 17 17 H 1.09004 * 113.61302 * 89.11535 * 16 15 13 18 18 C 1.53002 * 113.61737 * 220.01757 * 16 15 13 19 19 N 1.46506 * 109.46917 * 272.50011 * 18 16 15 20 20 C 1.34949 * 126.03458 * 124.71742 * 19 18 16 21 21 C 1.35316 * 107.74218 * 179.83841 * 20 19 18 22 22 C 1.39873 * 107.91902 * 0.41818 * 21 20 19 23 23 N 1.30832 * 108.20360 * 359.74273 * 22 21 20 24 24 C 1.53779 * 87.08221 * 334.56628 * 16 15 13 25 25 H 1.08999 * 109.47703 * 271.09191 * 1 2 3 26 26 H 1.09007 * 109.47061 * 31.09507 * 1 2 3 27 27 H 1.09006 * 109.47088 * 151.08846 * 1 2 3 28 28 H 1.07999 * 125.56168 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47592 * 125.04440 * 5 4 3 30 30 H 0.96707 * 114.00040 * 179.97438 * 6 5 4 31 31 H 1.48501 * 110.00112 * 178.68147 * 7 5 4 32 32 H 1.48499 * 109.99930 * 299.99892 * 7 5 4 33 33 H 1.08003 * 126.45475 * 180.02562 * 8 4 3 34 34 H 0.96995 * 119.99467 * 354.32101 * 12 10 9 35 35 H 1.08994 * 113.61350 * 254.52507 * 15 13 12 36 36 H 1.09001 * 113.61745 * 25.43239 * 15 13 12 37 37 H 1.08998 * 109.46772 * 32.49781 * 18 16 15 38 38 H 1.08998 * 109.47058 * 152.49746 * 18 16 15 39 39 H 1.07995 * 126.12722 * 359.97438 * 20 19 18 40 40 H 1.07997 * 126.03915 * 180.16242 * 21 20 19 41 41 H 1.08007 * 125.89576 * 179.71792 * 22 21 20 42 42 H 1.08994 * 113.61400 * 270.88439 * 24 16 15 43 43 H 1.09003 * 113.69108 * 139.98980 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 -0.0067 5 6 4.7536 1.6189 -0.0155 6 8 5.4694 1.4507 -1.2408 7 14 4.1935 3.3891 0.1385 8 6 3.5779 -0.6888 -0.0049 9 6 2.2678 -1.1181 0.0031 10 6 1.8124 -2.5123 0.0077 11 8 0.6246 -2.7648 -0.0721 12 7 2.7095 -3.5140 0.1003 13 6 2.2500 -4.8995 0.2243 14 1 1.2456 -4.9768 0.6402 15 6 2.4565 -5.7334 -1.0513 16 6 2.8695 -6.8943 -0.1311 17 1 2.0339 -7.5180 0.1867 18 6 4.0511 -7.7077 -0.6632 19 7 3.5564 -8.7683 -1.5446 20 6 3.9365 -8.9806 -2.8220 21 6 3.2531 -10.0539 -3.2825 22 6 2.4201 -10.5073 -2.2544 23 7 2.6011 -9.7373 -1.2122 24 6 3.2708 -5.8287 0.9024 25 1 -0.3634 0.0196 1.0274 26 1 -0.3633 0.8801 -0.5308 27 1 -0.3633 -0.8996 -0.4969 28 1 1.9081 2.1236 -0.0004 29 1 5.4043 1.3696 0.8226 30 1 6.2569 2.0070 -1.3159 31 1 5.3708 4.2940 0.1630 32 1 3.3056 3.7416 -0.9985 33 1 4.4583 -1.3144 -0.0085 34 1 3.6591 -3.3178 0.0810 35 1 1.5361 -5.9207 -1.6042 36 1 3.2654 -5.3694 -1.6848 37 1 4.7202 -7.0534 -1.2221 38 1 4.5918 -8.1522 0.1723 39 1 4.6584 -8.3995 -3.3765 40 1 3.3333 -10.4820 -4.2707 41 1 1.7440 -11.3476 -2.3112 42 1 4.3022 -5.4907 0.8030 43 1 3.0084 -6.0917 1.9272 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:43 Heat of formation + Delta-G solvation = 96.168853 kcal Electronic energy + Delta-G solvation = -25621.753165 eV Core-core repulsion = 21865.463296 eV Total energy + Delta-G solvation = -3756.289869 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56818 -42.05053 -40.89421 -39.28586 -37.76713 -35.35827 -34.07255 -33.47437 -31.12038 -30.82552 -28.60517 -28.22292 -26.76853 -25.75739 -24.80605 -23.08353 -22.04940 -21.57770 -21.24830 -20.75130 -20.08496 -18.66110 -18.37655 -18.25432 -17.40860 -16.95058 -16.71700 -16.34315 -16.11570 -15.78574 -15.44927 -15.34796 -15.06782 -14.88524 -14.51445 -14.45227 -14.17259 -14.02781 -13.68338 -13.58051 -13.50235 -13.38350 -13.24459 -13.11293 -12.87738 -12.50929 -12.31458 -11.92956 -11.88606 -11.56546 -11.47846 -11.13352 -10.34773 -10.33737 -10.18836 -9.69734 -9.47825 -9.27489 -4.86422 0.37496 1.00542 1.36529 1.53052 1.56065 1.66766 1.69147 1.95479 2.02639 2.24684 2.30406 3.36714 3.48087 3.51238 3.56528 3.67827 3.76533 3.91761 3.93313 3.98617 4.08610 4.14498 4.18808 4.32615 4.34882 4.40386 4.50459 4.58970 4.63572 4.66598 4.69093 4.74961 4.77745 4.79628 4.90292 4.95311 5.01526 5.15361 5.17113 5.21511 5.48875 5.66524 5.75438 5.88623 6.13335 6.19358 6.44793 6.72234 6.78417 7.09268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.414 5.414 3 C 0.031 3.969 4 C -0.181 4.181 5 C -0.045 4.045 6 O -0.560 6.560 7 Si 0.759 3.241 8 C -0.109 4.109 9 C -0.080 4.080 10 C 0.587 3.413 11 O -0.586 6.586 12 N -0.693 5.693 13 C 0.123 3.877 14 H 0.091 0.909 15 C -0.142 4.142 16 C -0.114 4.114 17 H 0.082 0.918 18 C 0.140 3.860 19 N -0.375 5.375 20 C 0.053 3.947 21 C -0.294 4.294 22 C 0.028 3.972 23 N -0.338 5.338 24 C -0.116 4.116 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.195 0.805 29 H 0.092 0.908 30 H 0.392 0.608 31 H -0.290 1.290 32 H -0.298 1.298 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.206 0.794 40 H 0.160 0.840 41 H 0.195 0.805 42 H 0.121 0.879 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 3.377 2.253 6.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.086 5.086 3 C -0.106 4.106 4 C -0.187 4.187 5 C -0.155 4.155 6 O -0.370 6.370 7 Si 0.665 3.335 8 C -0.135 4.135 9 C -0.193 4.193 10 C 0.376 3.624 11 O -0.468 6.468 12 N -0.344 5.344 13 C 0.018 3.982 14 H 0.109 0.891 15 C -0.181 4.181 16 C -0.134 4.134 17 H 0.101 0.899 18 C 0.020 3.980 19 N -0.158 5.158 20 C -0.093 4.093 21 C -0.324 4.324 22 C -0.157 4.157 23 N -0.160 5.160 24 C -0.154 4.154 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.211 0.789 29 H 0.110 0.890 30 H 0.242 0.758 31 H -0.217 1.217 32 H -0.225 1.225 33 H 0.181 0.819 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.222 0.778 40 H 0.177 0.823 41 H 0.212 0.788 42 H 0.140 0.860 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.501 3.856 3.074 6.048 hybrid contribution 1.143 -0.376 -1.799 2.164 sum 4.644 3.480 1.275 5.942 Atomic orbital electron populations 1.22440 0.74902 1.05743 1.04896 1.44006 1.07634 1.04836 1.52125 1.22236 0.90001 0.92430 1.05931 1.18896 0.92885 0.94188 1.12728 1.24203 0.93652 1.08925 0.88690 1.86563 1.44132 1.67212 1.39087 0.94399 0.80533 0.72043 0.86538 1.21447 0.94374 0.95024 1.02664 1.20093 0.90975 0.87542 1.20643 1.17249 0.85414 0.84364 0.75343 1.90773 1.17982 1.85395 1.52686 1.45505 1.10037 1.05344 1.73521 1.22442 0.99526 0.78643 0.97602 0.89062 1.23552 1.01962 0.95568 0.96982 1.22523 0.98467 0.94704 0.97665 0.89928 1.22029 0.95662 0.86176 0.94182 1.48975 1.31709 1.24331 1.10741 1.23173 1.00946 0.99142 0.86065 1.21867 1.05286 1.02486 1.02729 1.24316 1.00242 0.99843 0.91312 1.77259 1.10235 1.03387 1.25121 1.23321 1.00480 0.92757 0.98866 0.89367 0.87335 0.89696 0.78861 0.89017 0.75820 1.21687 1.22532 0.81909 0.74415 0.93564 0.87813 0.85331 0.88696 0.77760 0.82259 0.78812 0.86047 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 10.66 127.77 1.36 1.39 16 2 N -0.41 -1.54 3.16 -534.31 -1.69 -3.23 16 3 C 0.03 0.03 9.94 83.48 0.83 0.86 16 4 C -0.18 -0.30 5.46 -20.12 -0.11 -0.41 16 5 C -0.05 0.08 3.01 71.23 0.21 0.30 16 6 O -0.56 -0.62 12.86 -148.98 -1.92 -2.54 16 7 Si 0.76 -2.56 30.60 68.60 2.10 -0.46 16 8 C -0.11 -0.19 10.29 22.57 0.23 0.04 16 9 C -0.08 -0.40 6.89 40.35 0.28 -0.12 16 10 C 0.59 3.94 7.77 86.44 0.67 4.61 16 11 O -0.59 -8.13 14.28 -4.32 -0.06 -8.19 16 12 N -0.69 0.47 5.34 -443.99 -2.37 -1.90 16 13 C 0.12 -0.06 4.20 45.52 0.19 0.13 16 14 H 0.09 0.47 7.54 -2.39 -0.02 0.45 16 15 C -0.14 0.13 7.43 31.12 0.23 0.36 16 16 C -0.11 0.30 3.87 -10.27 -0.04 0.26 16 17 H 0.08 0.28 7.96 -2.38 -0.02 0.26 16 18 C 0.14 -0.63 6.35 86.38 0.55 -0.08 16 19 N -0.38 -1.02 3.68 -348.05 -1.28 -2.30 16 20 C 0.05 0.01 11.45 83.54 0.96 0.97 16 21 C -0.29 -0.81 10.80 21.99 0.24 -0.57 16 22 C 0.03 0.16 12.03 85.24 1.02 1.19 16 23 N -0.34 -2.96 12.27 -57.02 -0.70 -3.66 16 24 C -0.12 0.77 7.39 31.12 0.23 1.00 16 25 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.11 -0.52 8.14 -2.38 -0.02 -0.54 16 27 H 0.08 0.47 6.18 -2.38 -0.01 0.46 16 28 H 0.19 -0.93 6.21 -2.91 -0.02 -0.95 16 29 H 0.09 -0.53 7.96 -2.39 -0.02 -0.55 16 30 H 0.39 -2.68 8.74 -74.05 -0.65 -3.33 16 31 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 32 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 33 H 0.16 -0.57 7.45 -2.91 -0.02 -0.59 16 34 H 0.42 -2.83 7.63 -92.71 -0.71 -3.54 16 35 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 37 H 0.13 -1.41 7.77 -2.39 -0.02 -1.43 16 38 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.21 -1.59 8.06 -2.91 -0.02 -1.62 16 40 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 41 H 0.20 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 43 H 0.09 -0.54 8.14 -2.39 -0.02 -0.55 16 Total: 0.00 -27.51 362.22 0.67 -26.84 By element: Atomic # 1 Polarization: -14.21 SS G_CDS: -0.28 Total: -14.48 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.86 Total: 9.93 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: -6.04 Total: -11.09 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.98 Total: -10.73 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.10 Total: -0.46 kcal Total: -27.51 0.67 -26.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.012 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds