Wall clock time and date at job start Sun Mar 7 2021 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37647 * 125.67696 * 2 1 4 4 C 1.46680 * 126.23571 * 359.97438 * 3 2 1 5 5 O 1.21697 * 119.99413 * 4.64970 * 4 3 2 6 6 N 1.34772 * 120.00184 * 184.64922 * 4 3 2 7 7 C 1.46502 * 119.99964 * 174.89400 * 6 4 3 8 8 H 1.09001 * 112.90732 * 336.26234 * 7 6 4 9 9 C 1.53787 * 113.61004 * 107.50276 * 7 6 4 10 10 C 1.53783 * 87.07577 * 139.98421 * 9 7 6 11 11 H 1.08998 * 113.61758 * 89.12166 * 10 9 7 12 12 C 1.53003 * 113.68728 * 220.00579 * 10 9 7 13 13 N 1.46497 * 109.47323 * 272.53410 * 12 10 9 14 14 C 1.34952 * 126.03551 * 125.00099 * 13 12 10 15 15 C 1.35313 * 107.74918 * 179.97438 * 14 13 12 16 16 C 1.39873 * 107.91835 * 0.02562 * 15 14 13 17 17 N 1.30840 * 108.20083 * 359.74217 * 16 15 14 18 18 C 1.53773 * 87.08404 * 334.56713 * 10 9 7 19 19 C 1.37876 * 107.53500 * 179.73749 * 3 2 1 20 20 C 1.39837 * 107.08563 * 0.22431 * 19 3 2 21 21 C 1.35453 * 107.86271 * 0.02562 * 20 19 3 22 22 C 1.50700 * 125.56317 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.47207 * 150.02381 * 22 21 20 24 24 Si 1.86300 * 109.47449 * 30.01743 * 22 21 20 25 25 H 1.09003 * 109.46611 * 95.78550 * 1 2 3 26 26 H 1.09008 * 109.46788 * 215.77795 * 1 2 3 27 27 H 1.08991 * 109.47226 * 335.78289 * 1 2 3 28 28 H 0.96995 * 120.00051 * 354.89962 * 6 4 3 29 29 H 1.08998 * 113.61212 * 254.53061 * 9 7 6 30 30 H 1.08998 * 113.61400 * 25.43823 * 9 7 6 31 31 H 1.08996 * 109.47130 * 32.54097 * 12 10 9 32 32 H 1.09003 * 109.46686 * 152.53765 * 12 10 9 33 33 H 1.07998 * 126.12479 * 0.02562 * 14 13 12 34 34 H 1.07996 * 126.04473 * 180.02562 * 15 14 13 35 35 H 1.07998 * 125.89845 * 180.02562 * 16 15 14 36 36 H 1.08999 * 113.61567 * 270.88514 * 18 10 9 37 37 H 1.08997 * 113.61595 * 139.98004 * 18 10 9 38 38 H 1.08000 * 126.45819 * 180.26315 * 19 3 2 39 39 H 1.07997 * 126.07001 * 180.02562 * 20 19 3 40 40 H 1.09000 * 109.46890 * 270.01481 * 22 21 20 41 41 H 0.96706 * 113.99514 * 299.99411 * 23 22 21 42 42 H 1.48499 * 109.99997 * 180.02562 * 24 22 21 43 43 H 1.48501 * 109.99555 * 301.32284 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 -0.0005 5 8 0.6249 2.7646 0.0844 6 7 2.7090 3.5142 -0.0951 7 6 2.2492 4.9006 -0.2083 8 1 1.2393 4.9811 -0.6104 9 6 2.4721 5.7296 1.0676 10 6 2.8744 6.8935 0.1465 11 1 2.0355 7.5190 -0.1586 12 6 4.0629 7.7055 0.6654 13 7 3.5799 8.7631 1.5567 14 6 3.9808 8.9747 2.8278 15 6 3.2999 10.0432 3.3026 16 6 2.4533 10.5000 2.2871 17 7 2.6242 9.7365 1.2384 18 6 3.2621 5.8314 -0.8957 19 6 3.5780 0.6888 0.0060 20 6 3.5522 -0.7093 0.0044 21 6 2.2556 -1.1009 -0.0030 22 6 1.7710 -2.5279 -0.0076 23 8 0.5093 -2.6047 0.6588 24 14 3.0067 -3.6063 0.8760 25 1 -0.3633 -0.1036 -1.0225 26 1 -0.3633 -0.8338 0.6009 27 1 -0.3633 0.9371 0.4215 28 1 3.6587 3.3173 -0.0882 29 1 1.5586 5.9155 1.6326 30 1 3.2885 5.3627 1.6896 31 1 4.7396 7.0496 1.2131 32 1 4.5922 8.1529 -0.1759 33 1 4.7144 8.3955 3.3688 34 1 3.3934 10.4683 4.2910 35 1 1.7788 11.3407 2.3553 36 1 4.2945 5.4923 -0.8104 37 1 2.9864 6.0994 -1.9156 38 1 4.4583 1.3145 0.0116 39 1 4.4133 -1.3611 0.0084 40 1 1.6598 -2.8705 -1.0364 41 1 0.5333 -2.3145 1.5810 42 1 2.5407 -5.0163 0.8777 43 1 4.3312 -3.5104 0.2114 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:47 Heat of formation + Delta-G solvation = 97.055822 kcal Electronic energy + Delta-G solvation = -25738.652096 eV Core-core repulsion = 21982.400689 eV Total energy + Delta-G solvation = -3756.251407 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63477 -42.03759 -40.91948 -39.31461 -37.80332 -35.34744 -33.94671 -33.41387 -31.38739 -30.93466 -28.61921 -27.53596 -26.85517 -26.73049 -24.29666 -22.96850 -22.03755 -21.67826 -21.39763 -20.84814 -20.18398 -18.83285 -18.28145 -18.03196 -17.38446 -16.93304 -16.42571 -16.33655 -16.08370 -15.87275 -15.49750 -15.34145 -15.05740 -14.89153 -14.55885 -14.50645 -14.39478 -14.16510 -13.72741 -13.64818 -13.48915 -13.35483 -13.21843 -13.01045 -12.87656 -12.30544 -12.18747 -12.02336 -11.87685 -11.55312 -11.46708 -11.14870 -10.66314 -10.32409 -10.17428 -9.77692 -9.46216 -9.12589 -4.90964 0.33648 1.02289 1.17884 1.48104 1.68748 1.72921 1.75843 1.96946 2.03415 2.28441 2.34895 3.26892 3.37604 3.48881 3.52468 3.55528 3.69564 3.77599 3.92990 3.98072 4.10714 4.19640 4.29951 4.30701 4.33943 4.39738 4.51646 4.53699 4.60094 4.67963 4.73548 4.75842 4.81009 4.91937 4.96702 5.02009 5.03715 5.11723 5.17309 5.21352 5.50134 5.71231 5.76626 5.96496 6.10675 6.21576 6.46592 6.54884 6.79913 7.11239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.403 5.403 3 C -0.082 4.082 4 C 0.585 3.415 5 O -0.590 6.590 6 N -0.691 5.691 7 C 0.121 3.879 8 H 0.087 0.913 9 C -0.139 4.139 10 C -0.115 4.115 11 H 0.079 0.921 12 C 0.140 3.860 13 N -0.375 5.375 14 C 0.055 3.945 15 C -0.295 4.295 16 C 0.027 3.973 17 N -0.340 5.340 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.213 4.213 21 C 0.013 3.987 22 C -0.060 4.060 23 O -0.554 6.554 24 Si 0.814 3.186 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.420 0.580 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.208 0.792 34 H 0.160 0.840 35 H 0.194 0.806 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.177 0.823 39 H 0.163 0.837 40 H 0.112 0.888 41 H 0.396 0.604 42 H -0.296 1.296 43 H -0.272 1.272 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.803 -1.866 3.528 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.076 5.076 3 C -0.195 4.195 4 C 0.375 3.625 5 O -0.472 6.472 6 N -0.342 5.342 7 C 0.016 3.984 8 H 0.105 0.895 9 C -0.177 4.177 10 C -0.135 4.135 11 H 0.098 0.902 12 C 0.020 3.980 13 N -0.157 5.157 14 C -0.092 4.092 15 C -0.324 4.324 16 C -0.158 4.158 17 N -0.162 5.162 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.236 4.236 21 C -0.105 4.105 22 C -0.168 4.168 23 O -0.362 6.362 24 Si 0.716 3.284 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.258 0.742 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.111 0.889 33 H 0.225 0.775 34 H 0.178 0.822 35 H 0.211 0.789 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.195 0.805 39 H 0.181 0.819 40 H 0.129 0.871 41 H 0.246 0.754 42 H -0.223 1.223 43 H -0.197 1.197 Dipole moment (debyes) X Y Z Total from point charges 6.617 -2.864 1.613 7.388 hybrid contribution -0.365 0.652 0.069 0.751 sum 6.252 -2.212 1.682 6.842 Atomic orbital electron populations 1.22564 0.75837 1.06201 1.03950 1.43920 1.07121 1.04501 1.52029 1.20202 0.91493 0.87219 1.20601 1.17307 0.85380 0.84491 0.75344 1.90771 1.18246 1.85413 1.52793 1.45464 1.10076 1.05111 1.73524 1.22425 0.99344 0.78774 0.97814 0.89517 1.23539 1.02112 0.95272 0.96800 1.22516 0.98456 0.94757 0.97737 0.90211 1.22027 0.95740 0.86272 0.93963 1.48971 1.31441 1.24196 1.11141 1.23190 1.00770 0.99130 0.86074 1.21869 1.04971 1.02698 1.02863 1.24308 1.00239 0.99906 0.91323 1.77266 1.10585 1.03321 1.25031 1.23329 1.00692 0.92872 0.98607 1.21676 0.94391 0.95480 1.03175 1.20928 0.95256 0.95863 1.11594 1.21417 0.91256 0.89434 1.08413 1.25254 0.94497 0.94285 1.02783 1.86456 1.30168 1.88894 1.30698 0.92937 0.73540 0.73930 0.88034 0.91867 0.86229 0.89485 0.74174 0.93587 0.87322 0.85010 0.88867 0.77548 0.82244 0.78934 0.85771 0.89988 0.80535 0.81923 0.87087 0.75390 1.22313 1.19740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 10.30 127.77 1.32 1.54 16 2 N -0.40 -1.76 3.16 -519.70 -1.64 -3.40 16 3 C -0.08 -0.33 6.89 40.35 0.28 -0.05 16 4 C 0.59 3.56 7.77 86.45 0.67 4.23 16 5 O -0.59 -8.39 14.18 -4.34 -0.06 -8.45 16 6 N -0.69 1.33 5.34 -443.99 -2.37 -1.04 16 7 C 0.12 -0.13 4.21 45.52 0.19 0.06 16 8 H 0.09 0.47 7.53 -2.39 -0.02 0.45 16 9 C -0.14 0.30 7.43 31.12 0.23 0.53 16 10 C -0.11 0.38 3.86 -10.27 -0.04 0.34 16 11 H 0.08 0.26 7.96 -2.39 -0.02 0.24 16 12 C 0.14 -0.76 6.35 86.38 0.55 -0.21 16 13 N -0.37 -0.72 3.68 -348.07 -1.28 -2.00 16 14 C 0.05 -0.04 11.45 83.54 0.96 0.91 16 15 C -0.29 -0.60 10.80 21.99 0.24 -0.36 16 16 C 0.03 0.15 12.03 85.24 1.03 1.17 16 17 N -0.34 -2.84 12.28 -57.02 -0.70 -3.54 16 18 C -0.12 0.84 7.39 31.12 0.23 1.07 16 19 C -0.12 0.20 10.36 22.57 0.23 0.43 16 20 C -0.21 0.24 9.37 22.01 0.21 0.44 16 21 C 0.01 0.01 6.15 41.34 0.25 0.27 16 22 C -0.06 0.11 2.99 71.24 0.21 0.32 16 23 O -0.55 1.04 10.11 -148.98 -1.51 -0.46 16 24 Si 0.81 -3.99 31.29 68.60 2.15 -1.84 16 25 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.12 -0.02 5.24 -2.38 -0.01 -0.03 16 27 H 0.09 0.69 5.92 -2.39 -0.01 0.68 16 28 H 0.42 -3.78 7.63 -92.71 -0.71 -4.49 16 29 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.11 -0.71 7.90 -2.39 -0.02 -0.73 16 31 H 0.13 -1.65 7.78 -2.39 -0.02 -1.67 16 32 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.21 -1.90 8.06 -2.91 -0.02 -1.92 16 34 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 35 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.12 -1.65 8.08 -2.39 -0.02 -1.67 16 37 H 0.08 -0.50 8.14 -2.39 -0.02 -0.51 16 38 H 0.18 -1.61 7.45 -2.91 -0.02 -1.63 16 39 H 0.16 -0.75 6.62 -2.91 -0.02 -0.77 16 40 H 0.11 -0.06 7.96 -2.39 -0.02 -0.08 16 41 H 0.40 -3.57 8.29 -74.05 -0.61 -4.18 16 42 H -0.30 -0.66 7.11 99.48 0.71 0.04 16 43 H -0.27 0.43 6.76 99.48 0.67 1.11 16 Total: 0.00 -26.40 356.36 0.87 -25.54 By element: Atomic # 1 Polarization: -15.23 SS G_CDS: -0.27 Total: -15.50 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.55 Total: 10.70 kcal Atomic # 7 Polarization: -3.98 SS G_CDS: -5.99 Total: -9.97 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.57 Total: -8.91 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.15 Total: -1.84 kcal Total: -26.40 0.87 -25.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.593 kcal (2) G-P(sol) polarization free energy of solvation -26.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds