Wall clock time and date at job start Sun Mar 7 2021 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47305 * 2 1 4 4 C 1.50703 * 109.46858 * 239.99418 * 2 1 3 5 5 C 1.36444 * 120.29285 * 240.00169 * 4 2 1 6 6 C 1.40096 * 119.25295 * 179.97438 * 5 4 2 7 7 C 1.40849 * 132.86861 * 180.02562 * 6 5 4 8 8 C 1.46565 * 126.58288 * 359.96102 * 7 6 5 9 9 O 1.21727 * 119.99322 * 359.71090 * 8 7 6 10 10 N 1.34774 * 120.00668 * 179.71007 * 8 7 6 11 11 C 1.46496 * 120.00099 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.91109 * 23.75176 * 11 10 8 13 13 C 1.53787 * 113.61210 * 155.00440 * 11 10 8 14 14 C 1.53779 * 87.07963 * 139.97940 * 13 11 10 15 15 H 1.09006 * 113.61280 * 89.11401 * 14 13 11 16 16 C 1.53003 * 113.61005 * 219.93029 * 14 13 11 17 17 N 1.46503 * 109.46622 * 185.00145 * 16 14 13 18 18 C 1.34948 * 126.03715 * 125.00507 * 17 16 14 19 19 C 1.35319 * 107.74964 * 179.97438 * 18 17 16 20 20 C 1.39876 * 107.91600 * 359.97438 * 19 18 17 21 21 N 1.30835 * 108.20298 * 359.74571 * 20 19 18 22 22 C 1.53779 * 87.08402 * 334.56577 * 14 13 11 23 23 C 1.40557 * 106.84364 * 179.69628 * 7 6 5 24 24 N 1.30746 * 108.73998 * 0.26617 * 23 7 6 25 25 N 1.36584 * 120.22758 * 0.17511 * 6 5 4 26 26 C 1.36240 * 120.08301 * 0.06950 * 25 6 5 27 27 C 1.35195 * 120.70116 * 359.49968 * 26 25 6 28 28 H 0.96696 * 113.99601 * 300.00607 * 1 2 3 29 29 H 1.09003 * 109.46622 * 119.99662 * 2 1 3 30 30 H 1.48504 * 109.99853 * 178.68130 * 3 2 1 31 31 H 1.48500 * 109.99813 * 299.99443 * 3 2 1 32 32 H 1.07995 * 120.38002 * 359.95642 * 5 4 2 33 33 H 0.97002 * 119.99411 * 0.02562 * 10 8 7 34 34 H 1.08997 * 113.61028 * 254.52900 * 13 11 10 35 35 H 1.09000 * 113.61529 * 25.43039 * 13 11 10 36 36 H 1.08996 * 109.47332 * 305.00226 * 16 14 13 37 37 H 1.08996 * 109.47070 * 65.00843 * 16 14 13 38 38 H 1.07999 * 126.12413 * 359.95708 * 18 17 16 39 39 H 1.07998 * 126.04076 * 179.97438 * 19 18 17 40 40 H 1.07998 * 125.89611 * 179.97438 * 20 19 18 41 41 H 1.09002 * 113.61557 * 270.88569 * 22 14 13 42 42 H 1.09004 * 113.61501 * 139.97990 * 22 14 13 43 43 H 1.07997 * 125.63247 * 180.26208 * 23 7 6 44 44 H 1.08000 * 119.64755 * 180.29701 * 26 25 6 45 45 H 1.07997 * 119.83630 * 180.22933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7106 -1.2304 5 6 2.7161 -1.8205 -1.1121 6 6 3.1705 -2.4643 -2.2704 7 6 3.9739 -3.6016 -2.4820 8 6 4.5751 -4.4508 -1.4497 9 8 4.4011 -4.1934 -0.2728 10 7 5.3204 -5.5165 -1.8034 11 6 5.9217 -6.3648 -0.7715 12 1 5.3958 -6.3109 0.1816 13 6 6.2000 -7.8025 -1.2411 14 6 7.5201 -7.7194 -0.4567 15 1 7.4310 -8.0359 0.5826 16 6 8.7028 -8.3703 -1.1767 17 7 9.8792 -8.3459 -0.3038 18 6 10.6194 -9.4137 0.0609 19 6 11.6115 -8.9716 0.8681 20 6 11.4731 -7.5860 1.0006 21 7 10.4385 -7.2092 0.2939 22 6 7.4449 -6.1951 -0.6450 23 6 4.0835 -3.7698 -3.8732 24 7 3.4123 -2.8169 -4.4656 25 7 2.8329 -1.9816 -3.5027 26 6 2.0530 -0.8698 -3.6106 27 6 1.5960 -0.2375 -2.5064 28 1 -0.3932 0.4418 0.7650 29 1 1.7923 -0.5138 0.8901 30 1 3.5347 1.7701 0.0321 31 1 1.5617 2.4678 -1.2086 32 1 2.9842 -2.1983 -0.1366 33 1 5.4593 -5.7213 -2.7414 34 1 5.4997 -8.5357 -0.8410 35 1 6.3374 -7.8910 -2.3188 36 1 8.4546 -9.4026 -1.4232 37 1 8.9184 -7.8198 -2.0923 38 1 10.4501 -10.4377 -0.2376 39 1 12.3751 -9.5809 1.3285 40 1 12.1123 -6.9386 1.5826 41 1 7.9226 -5.8441 -1.5598 42 1 7.7497 -5.6306 0.2363 43 1 4.6316 -4.5561 -4.3707 44 1 1.7863 -0.4970 -4.5885 45 1 0.9757 0.6407 -2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:51 Heat of formation + Delta-G solvation = 150.187620 kcal Electronic energy + Delta-G solvation = -29741.330154 eV Core-core repulsion = 25537.278382 eV Total energy + Delta-G solvation = -4204.051772 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.43529 -42.03744 -41.00254 -39.49705 -39.08759 -37.29889 -35.13156 -34.38622 -33.49188 -32.29254 -30.97893 -30.45589 -28.50919 -27.33193 -26.69928 -25.37533 -24.38467 -23.40765 -22.86116 -21.90687 -21.53723 -21.42893 -20.60867 -19.23585 -18.41487 -18.32088 -17.98367 -17.60606 -17.16844 -17.05828 -16.74244 -16.47626 -15.96118 -15.82003 -15.69821 -15.49723 -15.28059 -14.91184 -14.80812 -14.60935 -14.33289 -13.99379 -13.93653 -13.54840 -13.47355 -13.43948 -13.40832 -13.14327 -12.91993 -12.61914 -12.28834 -12.13442 -12.00726 -11.84330 -11.74506 -11.60438 -11.34806 -11.01443 -10.86828 -10.33254 -10.26234 -10.08255 -9.47724 -8.92711 -5.03952 -0.71377 -0.27008 0.88607 0.92275 1.02475 1.20068 1.61724 1.69149 1.88932 1.94576 1.96701 2.19455 2.36981 2.93083 3.07860 3.35534 3.38683 3.47371 3.58112 3.67760 3.68803 3.76865 3.79557 3.88350 4.00464 4.09635 4.10325 4.19991 4.25478 4.29500 4.35831 4.40664 4.45435 4.62331 4.71096 4.76757 4.78676 4.82480 4.93021 4.97381 5.00458 5.02736 5.06035 5.15469 5.17020 5.24084 5.51028 5.57641 5.76593 6.16741 6.21305 6.55654 6.80713 6.83622 7.23533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.084 4.084 3 Si 0.804 3.196 4 C -0.032 4.032 5 C -0.122 4.122 6 C 0.147 3.853 7 C -0.338 4.338 8 C 0.598 3.402 9 O -0.594 6.594 10 N -0.701 5.701 11 C 0.119 3.881 12 H 0.090 0.910 13 C -0.114 4.114 14 C -0.110 4.110 15 H 0.083 0.917 16 C 0.139 3.861 17 N -0.377 5.377 18 C 0.053 3.947 19 C -0.294 4.294 20 C 0.024 3.976 21 N -0.332 5.332 22 C -0.134 4.134 23 C 0.134 3.866 24 N -0.336 5.336 25 N -0.275 5.275 26 C 0.110 3.890 27 C -0.151 4.151 28 H 0.409 0.591 29 H 0.091 0.909 30 H -0.307 1.307 31 H -0.271 1.271 32 H 0.153 0.847 33 H 0.415 0.585 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.208 0.792 39 H 0.160 0.840 40 H 0.192 0.808 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.241 0.759 44 H 0.207 0.793 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -1.468 -1.363 2.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.191 4.191 3 Si 0.707 3.293 4 C -0.037 4.037 5 C -0.141 4.141 6 C 0.026 3.974 7 C -0.352 4.352 8 C 0.388 3.612 9 O -0.476 6.476 10 N -0.351 5.351 11 C 0.014 3.986 12 H 0.108 0.892 13 C -0.152 4.152 14 C -0.130 4.130 15 H 0.101 0.899 16 C 0.019 3.981 17 N -0.159 5.159 18 C -0.093 4.093 19 C -0.323 4.323 20 C -0.161 4.161 21 N -0.154 5.154 22 C -0.173 4.173 23 C -0.047 4.047 24 N -0.157 5.157 25 N -0.039 5.039 26 C -0.015 4.015 27 C -0.172 4.172 28 H 0.261 0.739 29 H 0.109 0.891 30 H -0.235 1.235 31 H -0.197 1.197 32 H 0.170 0.830 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.224 0.776 39 H 0.177 0.823 40 H 0.209 0.791 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.257 0.743 44 H 0.224 0.776 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.750 0.354 -3.232 4.258 hybrid contribution 1.178 -1.464 0.783 2.036 sum -1.572 -1.110 -2.449 3.115 Atomic orbital electron populations 1.86422 1.15944 1.82620 1.51669 1.24899 0.86867 1.11530 0.95853 0.94240 0.76915 0.72788 0.85383 1.19870 0.94764 0.93010 0.96068 1.20692 1.00251 0.95341 0.97842 1.19565 0.96192 0.94932 0.86733 1.19743 1.16963 1.04027 0.94508 1.17053 0.77257 0.80168 0.86749 1.90750 1.63511 1.73038 1.20319 1.45511 1.51484 1.27400 1.10736 1.22472 0.92645 0.91102 0.92420 0.89196 1.23310 0.95126 0.94435 1.02333 1.22484 0.94669 0.95668 1.00149 0.89891 1.22030 0.80179 1.04814 0.91089 1.49009 1.23978 1.04395 1.38553 1.23208 0.92999 0.95079 0.98052 1.21863 1.05598 0.95134 1.09689 1.24315 0.96217 0.96626 0.98947 1.77335 1.13148 1.09729 1.15221 1.23417 0.95635 0.96314 1.01960 1.24682 0.93223 0.95814 0.90995 1.77565 1.19806 1.06890 1.11408 1.46308 1.32790 1.19305 1.05483 1.22202 0.91334 0.84597 1.03394 1.21166 1.02821 1.03288 0.89953 0.73877 0.89144 1.23496 1.19664 0.82965 0.74711 0.89155 0.86229 0.84983 0.88934 0.77558 0.82255 0.79092 0.89136 0.93870 0.74329 0.77625 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.47 12.76 -148.98 -1.90 -0.43 16 2 C -0.08 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.80 -3.22 31.97 68.60 2.19 -1.03 16 4 C -0.03 -0.15 4.53 -19.82 -0.09 -0.24 16 5 C -0.12 -1.13 9.35 22.30 0.21 -0.92 16 6 C 0.15 1.57 6.76 39.49 0.27 1.83 16 7 C -0.34 -2.87 6.17 -19.90 -0.12 -2.99 16 8 C 0.60 5.80 7.78 86.42 0.67 6.47 16 9 O -0.59 -10.54 15.31 -4.43 -0.07 -10.61 16 10 N -0.70 -0.76 5.34 -444.08 -2.37 -3.13 16 11 C 0.12 0.14 4.24 45.52 0.19 0.34 16 12 H 0.09 0.63 7.46 -2.39 -0.02 0.61 16 13 C -0.11 0.76 7.39 31.12 0.23 0.99 16 14 C -0.11 0.29 3.83 -10.27 -0.04 0.25 16 15 H 0.08 0.09 8.14 -2.38 -0.02 0.07 16 16 C 0.14 -0.65 6.35 86.38 0.55 -0.11 16 17 N -0.38 -0.95 3.68 -348.05 -1.28 -2.23 16 18 C 0.05 -0.01 11.45 83.54 0.96 0.94 16 19 C -0.29 -0.74 10.80 21.99 0.24 -0.50 16 20 C 0.02 0.14 12.03 85.24 1.03 1.17 16 21 N -0.33 -2.94 12.42 -57.02 -0.71 -3.65 16 22 C -0.13 -0.30 7.43 31.12 0.23 -0.06 16 23 C 0.13 0.39 11.44 85.42 0.98 1.37 16 24 N -0.34 -2.52 12.57 -56.61 -0.71 -3.23 16 25 N -0.27 -2.24 3.86 -187.27 -0.72 -2.96 16 26 C 0.11 0.28 11.18 83.31 0.93 1.21 16 27 C -0.15 -0.27 8.67 22.03 0.19 -0.08 16 28 H 0.41 -5.39 8.74 -74.06 -0.65 -6.04 16 29 H 0.09 -0.29 7.71 -2.39 -0.02 -0.31 16 30 H -0.31 -1.42 7.11 99.48 0.71 -0.72 16 31 H -0.27 0.08 7.07 99.48 0.70 0.79 16 32 H 0.15 1.63 7.01 -2.91 -0.02 1.61 16 33 H 0.42 -2.68 7.65 -92.71 -0.71 -3.39 16 34 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.12 -1.43 8.08 -2.39 -0.02 -1.45 16 36 H 0.13 -1.51 8.07 -2.39 -0.02 -1.53 16 37 H 0.09 -0.53 7.85 -2.39 -0.02 -0.55 16 38 H 0.21 -1.76 8.06 -2.91 -0.02 -1.78 16 39 H 0.16 -0.21 8.06 -2.91 -0.02 -0.24 16 40 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 41 H 0.09 0.10 7.90 -2.39 -0.02 0.08 16 42 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.24 -1.91 7.46 -2.91 -0.02 -1.93 16 44 H 0.21 -0.92 8.06 -2.91 -0.02 -0.95 16 45 H 0.18 -0.58 7.52 -2.91 -0.02 -0.60 16 Total: 0.00 -34.43 386.39 0.77 -33.66 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -0.27 Total: -16.39 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.62 Total: 9.99 kcal Atomic # 7 Polarization: -9.41 SS G_CDS: -5.80 Total: -15.20 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.97 Total: -11.04 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.19 Total: -1.03 kcal Total: -34.43 0.77 -33.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.850 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds