Wall clock time and date at job start Sun Mar 7 2021 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 117.00011 * 2 1 4 4 C 1.38402 * 120.12060 * 359.97438 * 3 2 1 5 5 C 1.38729 * 120.03155 * 180.02562 * 4 3 2 6 6 O 1.35710 * 119.86533 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99992 * 359.97438 * 6 5 4 8 8 C 1.39153 * 120.27244 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.87570 * 179.97438 * 8 5 4 10 10 O 1.42908 * 109.47324 * 284.99626 * 9 8 5 11 11 Si 1.86304 * 109.47078 * 164.99974 * 9 8 5 12 12 C 1.37579 * 120.23879 * 359.67170 * 8 5 4 13 13 C 1.39819 * 119.96462 * 0.62933 * 12 8 5 14 14 C 1.47301 * 120.13595 * 179.67354 * 13 12 8 15 15 O 1.21623 * 120.00000 * 179.72180 * 14 13 12 16 16 N 1.34773 * 120.00070 * 359.97438 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72645 * 16 14 13 18 18 H 1.09006 * 112.84642 * 336.19847 * 17 16 14 19 19 C 1.53774 * 113.61696 * 107.50253 * 17 16 14 20 20 C 1.53780 * 87.08094 * 139.98559 * 19 17 16 21 21 H 1.09000 * 113.61581 * 89.12317 * 20 19 17 22 22 C 1.53010 * 113.61327 * 220.02267 * 20 19 17 23 23 N 1.46500 * 109.46697 * 272.49733 * 22 20 19 24 24 C 1.34952 * 126.03620 * 124.71868 * 23 22 20 25 25 C 1.35317 * 107.74308 * 179.83695 * 24 23 22 26 26 C 1.39866 * 107.92307 * 0.42152 * 25 24 23 27 27 N 1.30838 * 108.20300 * 359.73655 * 26 25 24 28 28 C 1.53780 * 113.61736 * 205.00698 * 17 16 14 29 29 H 1.08992 * 109.46993 * 300.00244 * 1 2 3 30 30 H 1.08997 * 109.46567 * 60.00145 * 1 2 3 31 31 H 1.08992 * 109.46818 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.98243 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46641 * 60.00262 * 7 6 5 34 34 H 1.09000 * 109.47604 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46977 * 300.00569 * 7 6 5 36 36 H 1.08996 * 109.47770 * 45.00013 * 9 8 5 37 37 H 0.96698 * 113.99951 * 300.01024 * 10 9 8 38 38 H 1.48508 * 109.99690 * 58.67874 * 11 9 8 39 39 H 1.48496 * 110.00306 * 179.97438 * 11 9 8 40 40 H 1.08004 * 120.02091 * 180.29473 * 12 8 5 41 41 H 0.97000 * 120.00112 * 359.73083 * 16 14 13 42 42 H 1.08994 * 113.61732 * 254.53524 * 19 17 16 43 43 H 1.09001 * 113.61275 * 25.43630 * 19 17 16 44 44 H 1.08997 * 109.47304 * 32.49319 * 22 20 19 45 45 H 1.08992 * 109.47108 * 152.50056 * 22 20 19 46 46 H 1.07999 * 126.12430 * 359.97438 * 24 23 22 47 47 H 1.08005 * 126.03744 * 180.15944 * 25 24 23 48 48 H 1.08004 * 125.89888 * 179.75927 * 26 25 24 49 49 H 1.09001 * 113.61340 * 334.56146 * 28 17 16 50 50 H 1.08992 * 113.62029 * 105.46665 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 -0.0005 5 6 1.9253 3.6061 -0.0011 6 8 1.1853 4.7437 -0.0021 7 6 -0.2358 4.5932 -0.0032 8 6 3.3147 3.6834 -0.0016 9 6 3.9916 5.0297 -0.0028 10 8 3.8937 5.6111 -1.3046 11 14 5.7866 4.8227 0.4514 12 6 4.0725 2.5351 0.0052 13 6 3.4462 1.2851 -0.0006 14 6 4.2539 0.0532 -0.0006 15 8 3.7065 -1.0329 -0.0006 16 7 5.5995 0.1297 0.0045 17 6 6.4028 -1.0954 0.0105 18 1 5.8648 -1.9524 0.4158 19 6 7.1002 -1.3814 -1.3298 20 6 8.3218 -1.8275 -0.5091 21 1 8.3091 -2.8854 -0.2470 22 6 9.6576 -1.3775 -1.1044 23 7 10.1210 -2.3743 -2.0729 24 6 10.4414 -2.1391 -3.3626 25 6 10.8243 -3.3143 -3.9133 26 6 10.7256 -4.3032 -2.9291 27 7 10.3042 -3.7409 -1.8255 28 6 7.8061 -0.9089 0.6112 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2150 2.3164 -0.0005 33 1 -0.5436 4.0443 0.8868 34 1 -0.7054 5.5768 -0.0044 35 1 -0.5422 4.0435 -0.8932 36 1 3.5060 5.6813 0.7236 37 1 4.3056 5.0839 -2.0027 38 1 6.4526 3.9110 -0.5133 39 1 6.4656 6.1433 0.4532 40 1 5.1506 2.5992 0.0096 41 1 6.0360 0.9959 0.0042 42 1 6.6384 -2.1880 -1.8990 43 1 7.2789 -0.4881 -1.9284 44 1 9.5277 -0.4179 -1.6047 45 1 10.3943 -1.2752 -0.3077 46 1 10.4016 -1.1836 -3.8645 47 1 11.1450 -3.4632 -4.9338 48 1 10.9577 -5.3502 -3.0579 49 1 8.1778 0.1135 0.5433 50 1 7.9141 -1.3342 1.6089 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:00 Heat of formation + Delta-G solvation = 6.866215 kcal Electronic energy + Delta-G solvation = -34159.036713 eV Core-core repulsion = 29543.172158 eV Total energy + Delta-G solvation = -4615.864555 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15788 -42.00163 -40.94983 -40.10845 -39.26290 -38.49099 -37.06708 -35.12508 -33.57754 -32.26466 -31.67156 -30.94660 -29.00253 -28.61457 -28.02843 -26.72017 -26.14118 -25.13634 -23.79342 -22.65968 -22.01902 -21.67632 -21.46244 -20.51836 -19.99517 -18.83013 -18.37228 -18.06108 -17.93547 -17.30893 -17.20234 -16.64689 -16.54520 -16.38348 -16.23247 -16.11242 -15.87154 -15.77025 -15.60586 -15.40910 -15.15456 -14.71605 -14.50904 -14.21223 -14.16385 -13.99093 -13.65708 -13.56600 -13.44907 -13.31270 -13.18309 -12.83819 -12.69120 -12.54514 -12.54039 -12.30837 -12.17269 -11.83526 -11.76920 -11.68101 -11.53545 -11.43272 -10.89847 -10.52691 -10.31466 -10.09203 -9.92291 -9.46151 -9.19773 -4.87747 -0.26417 0.07586 1.02134 1.32852 1.56990 1.68480 1.72716 1.96715 2.00844 2.11573 2.12085 2.18334 2.59281 3.40858 3.43278 3.47685 3.53063 3.54786 3.60868 3.73959 3.78661 3.83462 3.95061 4.09693 4.10967 4.15343 4.21087 4.23970 4.25459 4.26848 4.28794 4.35714 4.52785 4.56287 4.61383 4.64877 4.66502 4.70575 4.74996 4.79725 4.82902 4.91882 4.93964 4.99268 5.03246 5.06773 5.16923 5.25481 5.30348 5.58142 5.76676 6.02905 6.21237 6.28294 6.54550 6.58305 6.79908 7.25407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.305 6.305 3 C 0.216 3.784 4 C -0.311 4.311 5 C 0.214 3.786 6 O -0.312 6.312 7 C 0.012 3.988 8 C -0.197 4.197 9 C -0.075 4.075 10 O -0.547 6.547 11 Si 0.763 3.237 12 C 0.002 3.998 13 C -0.227 4.227 14 C 0.563 3.437 15 O -0.568 6.568 16 N -0.706 5.706 17 C 0.120 3.880 18 H 0.089 0.911 19 C -0.143 4.143 20 C -0.115 4.115 21 H 0.081 0.919 22 C 0.139 3.861 23 N -0.374 5.374 24 C 0.053 3.947 25 C -0.295 4.295 26 C 0.027 3.973 27 N -0.337 5.337 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.384 0.616 38 H -0.247 1.247 39 H -0.302 1.302 40 H 0.166 0.834 41 H 0.413 0.587 42 H 0.044 0.956 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.206 0.794 47 H 0.159 0.841 48 H 0.194 0.806 49 H 0.124 0.876 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 5.749 0.970 5.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.216 6.216 3 C 0.167 3.833 4 C -0.331 4.331 5 C 0.166 3.834 6 O -0.224 6.224 7 C -0.082 4.082 8 C -0.198 4.198 9 C -0.182 4.182 10 O -0.355 6.355 11 Si 0.665 3.335 12 C -0.016 4.016 13 C -0.231 4.231 14 C 0.352 3.648 15 O -0.448 6.448 16 N -0.358 5.358 17 C 0.015 3.985 18 H 0.107 0.893 19 C -0.181 4.181 20 C -0.135 4.135 21 H 0.099 0.901 22 C 0.019 3.981 23 N -0.157 5.157 24 C -0.093 4.093 25 C -0.324 4.324 26 C -0.158 4.158 27 N -0.160 5.160 28 C -0.155 4.155 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.233 0.767 38 H -0.172 1.172 39 H -0.230 1.230 40 H 0.183 0.817 41 H 0.251 0.749 42 H 0.063 0.937 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.114 0.886 46 H 0.223 0.777 47 H 0.177 0.823 48 H 0.211 0.789 49 H 0.142 0.858 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.125 5.466 2.386 5.965 hybrid contribution -0.820 0.015 -2.189 2.337 sum -0.945 5.481 0.197 5.565 Atomic orbital electron populations 1.23461 0.76576 1.05689 1.02643 1.86368 1.23168 1.26037 1.86049 1.19021 0.91230 0.84645 0.88436 1.21412 1.01963 0.90811 1.18887 1.18955 0.91047 0.84807 0.88564 1.86143 1.21021 1.28715 1.86473 1.23460 0.76334 1.05828 1.02570 1.19515 0.90718 0.96650 1.12941 1.25160 1.12955 0.92322 0.87804 1.86621 1.80819 1.50768 1.17257 0.94296 0.70850 0.79651 0.88671 1.21002 1.00344 0.88716 0.91520 1.19146 0.90705 0.93864 1.19364 1.18133 0.82790 0.88315 0.75571 1.90825 1.72464 1.30503 1.50993 1.45726 1.04898 1.10071 1.75123 1.22393 0.90767 0.87945 0.97369 0.89330 1.23560 0.95969 1.01658 0.96956 1.22529 0.92841 1.00474 0.97635 0.90085 1.22045 0.95393 0.89048 0.91593 1.48982 1.50815 1.06393 1.09505 1.23168 0.99076 1.01804 0.85262 1.21861 1.15590 0.92446 1.02507 1.24306 0.98939 1.01610 0.90913 1.77268 1.24142 0.89704 1.24873 1.23341 0.91992 1.01779 0.98420 0.90871 0.91188 0.87021 0.82122 0.91000 0.86301 0.91590 0.87081 0.76732 1.17227 1.22958 0.81736 0.74910 0.93737 0.87685 0.85269 0.88644 0.77736 0.82301 0.78886 0.85783 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.62 8.56 -68.73 -0.59 -3.21 16 3 C 0.22 1.26 6.70 22.82 0.15 1.41 16 4 C -0.31 -0.42 8.01 22.43 0.18 -0.24 16 5 C 0.21 0.39 6.67 22.61 0.15 0.54 16 6 O -0.31 -0.55 9.80 -90.31 -0.88 -1.44 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.08 5.27 -19.80 -0.10 -0.02 16 9 C -0.07 0.11 2.37 71.23 0.17 0.28 16 10 O -0.55 -1.03 12.88 -148.98 -1.92 -2.95 16 11 Si 0.76 -4.84 30.23 68.60 2.07 -2.76 16 12 C 0.00 -0.01 8.14 22.50 0.18 0.18 16 13 C -0.23 -0.95 5.89 -20.00 -0.12 -1.07 16 14 C 0.56 4.14 7.76 86.63 0.67 4.82 16 15 O -0.57 -9.64 14.75 16.86 0.25 -9.39 16 16 N -0.71 0.69 5.30 -443.42 -2.35 -1.67 16 17 C 0.12 -0.03 4.24 45.51 0.19 0.16 16 18 H 0.09 0.56 7.46 -2.38 -0.02 0.54 16 19 C -0.14 0.15 7.43 31.12 0.23 0.38 16 20 C -0.12 0.31 3.87 -10.26 -0.04 0.27 16 21 H 0.08 0.29 7.96 -2.39 -0.02 0.27 16 22 C 0.14 -0.68 6.35 86.38 0.55 -0.13 16 23 N -0.37 -0.93 3.68 -348.05 -1.28 -2.21 16 24 C 0.05 0.00 11.45 83.54 0.96 0.95 16 25 C -0.29 -0.77 10.80 21.99 0.24 -0.53 16 26 C 0.03 0.16 12.03 85.24 1.02 1.18 16 27 N -0.34 -2.94 12.27 -57.02 -0.70 -3.64 16 28 C -0.12 0.82 7.39 31.12 0.23 1.05 16 29 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 30 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 31 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.16 -0.53 4.50 -2.91 -0.01 -0.55 16 33 H 0.07 -0.55 7.65 -2.39 -0.02 -0.57 16 34 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 36 H 0.11 -0.05 7.82 -2.39 -0.02 -0.07 16 37 H 0.38 -1.82 8.70 -74.06 -0.64 -2.47 16 38 H -0.25 1.96 6.69 99.48 0.67 2.63 16 39 H -0.30 -0.64 7.11 99.48 0.71 0.07 16 40 H 0.17 -1.45 3.16 -2.91 -0.01 -1.45 16 41 H 0.41 -3.44 6.74 -92.71 -0.63 -4.06 16 42 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.10 -0.54 7.90 -2.39 -0.02 -0.56 16 44 H 0.13 -1.50 7.77 -2.39 -0.02 -1.52 16 45 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.21 -1.68 8.06 -2.91 -0.02 -1.71 16 47 H 0.16 -0.19 8.06 -2.91 -0.02 -0.21 16 48 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 49 H 0.12 -1.66 8.08 -2.39 -0.02 -1.68 16 50 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 Total: 0.00 -31.62 410.80 1.22 -30.41 By element: Atomic # 1 Polarization: -14.23 SS G_CDS: -0.27 Total: -14.50 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.89 Total: 11.37 kcal Atomic # 7 Polarization: -3.19 SS G_CDS: -4.33 Total: -7.52 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -3.14 Total: -16.99 kcal Atomic # 14 Polarization: -4.84 SS G_CDS: 2.07 Total: -2.76 kcal Total: -31.62 1.22 -30.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.273 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds