Wall clock time and date at job start Sun Mar 7 2021 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.46822 * 2 1 4 4 C 1.50699 * 109.47486 * 120.00155 * 2 1 3 5 5 C 1.37852 * 119.88851 * 65.02479 * 4 2 1 6 6 C 1.39664 * 119.87508 * 179.97438 * 5 4 2 7 7 C 1.47695 * 120.16312 * 180.02562 * 6 5 4 8 8 O 1.21570 * 119.99734 * 179.97438 * 7 6 5 9 9 N 1.34771 * 120.00061 * 359.97438 * 7 6 5 10 10 C 1.46505 * 119.99747 * 179.97438 * 9 7 6 11 11 H 1.08996 * 112.85166 * 23.80065 * 10 9 7 12 12 C 1.53778 * 113.61242 * 154.99656 * 10 9 7 13 13 C 1.53785 * 87.08087 * 139.98136 * 12 10 9 14 14 H 1.08995 * 113.61465 * 89.11469 * 13 12 10 15 15 C 1.53000 * 113.61373 * 220.01769 * 13 12 10 16 16 N 1.46495 * 109.47048 * 184.99480 * 15 13 12 17 17 C 1.34955 * 126.03329 * 124.71794 * 16 15 13 18 18 C 1.35319 * 107.74292 * 179.84302 * 17 16 15 19 19 C 1.39873 * 107.92094 * 0.42005 * 18 17 16 20 20 N 1.30834 * 108.20200 * 359.74133 * 19 18 17 21 21 C 1.53777 * 87.07905 * 334.56635 * 13 12 10 22 22 C 1.39823 * 119.66797 * 359.97438 * 6 5 4 23 23 F 1.35103 * 120.11013 * 180.27459 * 22 6 5 24 24 C 1.38325 * 119.77792 * 359.97438 * 22 6 5 25 25 C 1.38203 * 120.11835 * 0.02562 * 24 22 6 26 26 H 0.96696 * 113.99764 * 299.99458 * 1 2 3 27 27 H 1.09002 * 109.46989 * 240.00878 * 2 1 3 28 28 H 1.48498 * 110.00332 * 178.68076 * 3 2 1 29 29 H 1.48504 * 110.00059 * 300.00513 * 3 2 1 30 30 H 1.07998 * 120.06417 * 359.95260 * 5 4 2 31 31 H 0.97000 * 120.00300 * 359.97438 * 9 7 6 32 32 H 1.09006 * 113.61660 * 254.52974 * 12 10 9 33 33 H 1.09000 * 113.61960 * 25.43471 * 12 10 9 34 34 H 1.09002 * 109.47306 * 305.00082 * 15 13 12 35 35 H 1.09003 * 109.46956 * 64.99937 * 15 13 12 36 36 H 1.08004 * 126.12789 * 359.97438 * 17 16 15 37 37 H 1.08004 * 126.04065 * 180.16279 * 18 17 16 38 38 H 1.08002 * 125.89710 * 179.75866 * 19 18 17 39 39 H 1.09000 * 113.61701 * 270.88268 * 21 13 12 40 40 H 1.09002 * 113.61768 * 139.98237 * 21 13 12 41 41 H 1.07997 * 119.93924 * 180.02562 * 24 22 6 42 42 H 1.07996 * 119.82790 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 1.6847 -2.0566 1.3952 6 6 2.1510 -2.7149 2.5354 7 6 1.8907 -4.1572 2.7182 8 8 2.2983 -4.7272 3.7116 9 7 1.2014 -4.8413 1.7838 10 6 0.9438 -6.2721 1.9649 11 1 0.9725 -6.5783 3.0106 12 6 -0.2979 -6.7748 1.2097 13 6 0.5153 -8.0355 0.8714 14 1 0.4276 -8.8249 1.6178 15 6 0.2987 -8.5395 -0.5569 16 7 1.0179 -9.8020 -0.7434 17 6 0.4808 -10.9672 -1.1621 18 6 1.4729 -11.8865 -1.2055 19 6 2.6548 -11.2642 -0.7903 20 7 2.3832 -10.0148 -0.5130 21 6 1.7761 -7.1704 1.0349 22 6 2.8662 -2.0018 3.5024 23 9 3.3262 -2.6308 4.6060 24 6 3.1067 -0.6516 3.3222 25 6 2.6412 -0.0093 2.1905 26 1 -0.3933 0.4416 0.7651 27 1 1.7924 -0.5137 -0.8901 28 1 3.5345 1.7705 0.0321 29 1 1.5613 2.4680 -1.2085 30 1 1.1317 -2.6012 0.6443 31 1 0.8758 -4.3864 0.9913 32 1 -1.1539 -6.9679 1.8564 33 1 -0.5524 -6.1723 0.3377 34 1 -0.7658 -8.6988 -0.7285 35 1 0.6740 -7.7997 -1.2640 36 1 -0.5547 -11.1352 -1.4187 37 1 1.3695 -12.9194 -1.5037 38 1 3.6241 -11.7340 -0.7123 39 1 2.0888 -6.6761 0.1152 40 1 2.5947 -7.6828 1.5405 41 1 3.6592 -0.0984 4.0672 42 1 2.8320 1.0450 2.0544 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:04 Heat of formation + Delta-G solvation = 28.905547 kcal Electronic energy + Delta-G solvation = -27388.779019 eV Core-core repulsion = 23252.855808 eV Total energy + Delta-G solvation = -4135.923211 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04381 -42.07675 -41.52501 -40.39239 -39.34443 -37.43113 -35.33970 -33.79552 -32.50108 -32.22319 -30.94991 -28.56379 -26.76598 -26.62755 -25.80027 -24.19564 -22.84538 -21.92695 -21.76832 -21.50317 -20.71150 -19.21260 -18.39048 -18.32297 -18.19214 -17.41290 -17.01907 -16.96148 -16.53950 -16.23764 -15.98464 -15.89391 -15.70132 -15.55100 -15.20228 -14.85881 -14.76457 -14.50132 -14.38392 -14.01672 -13.69446 -13.58157 -13.51877 -13.45839 -13.24334 -12.98725 -12.84986 -12.27780 -12.17412 -11.91176 -11.86587 -11.63923 -11.41216 -11.18140 -10.46759 -10.43188 -10.34813 -10.12674 -9.84810 -9.49517 -4.96795 -0.52661 -0.05353 1.00497 1.31367 1.55755 1.66904 1.67619 1.94057 1.95174 2.02514 2.44545 3.02704 3.30327 3.33975 3.39354 3.46009 3.56610 3.64518 3.66074 3.72615 3.96177 3.98982 4.08148 4.08440 4.19289 4.28008 4.36416 4.42597 4.55993 4.65303 4.67313 4.74013 4.75767 4.78271 4.82673 4.91039 4.92800 4.94513 5.00950 5.11123 5.13051 5.15863 5.45763 5.57665 5.74798 6.19451 6.32847 6.78840 6.79788 7.01337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.065 4.065 3 Si 0.769 3.231 4 C -0.134 4.134 5 C -0.024 4.024 6 C -0.190 4.190 7 C 0.552 3.448 8 O -0.575 6.575 9 N -0.696 5.696 10 C 0.113 3.887 11 H 0.090 0.910 12 C -0.112 4.112 13 C -0.110 4.110 14 H 0.083 0.917 15 C 0.139 3.861 16 N -0.377 5.377 17 C 0.054 3.946 18 C -0.293 4.293 19 C 0.024 3.976 20 N -0.333 5.333 21 C -0.135 4.135 22 C 0.131 3.869 23 F -0.138 7.138 24 C -0.152 4.152 25 C -0.049 4.049 26 H 0.398 0.602 27 H 0.119 0.881 28 H -0.284 1.284 29 H -0.302 1.302 30 H 0.159 0.841 31 H 0.416 0.584 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.208 0.792 37 H 0.160 0.840 38 H 0.192 0.808 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.168 0.832 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.812 4.716 -4.518 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.175 4.175 3 Si 0.676 3.324 4 C -0.135 4.135 5 C -0.043 4.043 6 C -0.194 4.194 7 C 0.340 3.660 8 O -0.456 6.456 9 N -0.348 5.348 10 C 0.009 3.991 11 H 0.108 0.892 12 C -0.151 4.151 13 C -0.130 4.130 14 H 0.102 0.898 15 C 0.019 3.981 16 N -0.160 5.160 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.155 5.155 21 C -0.173 4.173 22 C 0.111 3.889 23 F -0.116 7.116 24 C -0.170 4.170 25 C -0.067 4.067 26 H 0.248 0.752 27 H 0.136 0.864 28 H -0.210 1.210 29 H -0.230 1.230 30 H 0.177 0.823 31 H 0.255 0.745 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.178 0.822 38 H 0.209 0.791 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.185 0.815 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.578 5.809 -4.332 9.144 hybrid contribution 0.321 -1.754 -0.226 1.797 sum -5.256 4.055 -4.558 8.053 Atomic orbital electron populations 1.86494 1.16633 1.82066 1.50660 1.25092 0.85629 1.10308 0.96494 0.93849 0.78009 0.75166 0.85412 1.20490 1.00614 0.94272 0.98112 1.21199 0.94707 0.94247 0.94130 1.20072 1.06991 0.93712 0.98594 1.18432 0.77921 0.86786 0.82815 1.90839 1.52609 1.71152 1.30974 1.45733 1.55514 1.10025 1.23538 1.22561 0.97885 0.78797 0.99899 0.89177 1.23309 0.95886 0.94651 1.01230 1.22486 0.97119 0.96822 0.96532 0.89836 1.22028 0.97480 0.81998 0.96585 1.49006 1.05978 1.10093 1.50915 1.23215 1.01447 0.85558 0.99055 1.21868 0.92462 1.02509 1.15436 1.24317 1.01074 0.91718 0.98975 1.77331 0.93941 1.19196 1.25016 1.23418 0.97053 0.96932 0.99937 1.18258 0.95591 0.91835 0.83239 1.91558 1.86205 1.82943 1.50938 1.21402 1.03240 0.91355 1.01046 1.21390 0.93272 1.00915 0.91091 0.75205 0.86380 1.21050 1.22975 0.82321 0.74470 0.88931 0.86173 0.84897 0.88885 0.77508 0.82237 0.79098 0.88983 0.93810 0.81474 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.86 12.83 -148.98 -1.91 1.95 16 2 C -0.06 0.49 2.80 71.24 0.20 0.68 16 3 Si 0.77 -5.82 29.79 68.60 2.04 -3.78 16 4 C -0.13 0.80 5.35 -19.90 -0.11 0.69 16 5 C -0.02 0.09 9.17 22.52 0.21 0.29 16 6 C -0.19 -0.72 5.88 -20.05 -0.12 -0.84 16 7 C 0.55 4.64 7.77 86.74 0.67 5.32 16 8 O -0.58 -10.74 14.94 -3.94 -0.06 -10.80 16 9 N -0.70 -0.18 5.31 -443.06 -2.35 -2.53 16 10 C 0.11 0.11 4.24 45.52 0.19 0.30 16 11 H 0.09 0.63 7.46 -2.39 -0.02 0.62 16 12 C -0.11 0.80 7.39 31.12 0.23 1.03 16 13 C -0.11 0.32 3.83 -10.27 -0.04 0.28 16 14 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 15 C 0.14 -0.70 6.35 86.38 0.55 -0.15 16 16 N -0.38 -0.87 3.68 -348.05 -1.28 -2.15 16 17 C 0.05 -0.02 11.45 83.54 0.96 0.93 16 18 C -0.29 -0.71 10.80 21.99 0.24 -0.47 16 19 C 0.02 0.14 12.03 85.24 1.03 1.17 16 20 N -0.33 -2.90 12.42 -57.02 -0.71 -3.61 16 21 C -0.13 -0.26 7.43 31.12 0.23 -0.03 16 22 C 0.13 0.75 7.29 22.67 0.17 0.92 16 23 F -0.14 -1.83 15.55 44.97 0.70 -1.13 16 24 C -0.15 0.33 10.01 22.28 0.22 0.55 16 25 C -0.05 0.33 8.66 22.31 0.19 0.52 16 26 H 0.40 -5.77 8.70 -74.06 -0.64 -6.42 16 27 H 0.12 -0.86 7.96 -2.39 -0.02 -0.87 16 28 H -0.28 0.72 7.11 99.48 0.71 1.43 16 29 H -0.30 -0.33 7.11 99.48 0.71 0.38 16 30 H 0.16 -1.37 6.41 -2.91 -0.02 -1.39 16 31 H 0.42 -2.91 6.76 -92.71 -0.63 -3.54 16 32 H 0.09 -0.74 8.14 -2.38 -0.02 -0.76 16 33 H 0.12 -1.49 8.08 -2.39 -0.02 -1.51 16 34 H 0.13 -1.57 8.07 -2.39 -0.02 -1.59 16 35 H 0.09 -0.57 7.84 -2.39 -0.02 -0.59 16 36 H 0.21 -1.82 8.06 -2.91 -0.02 -1.84 16 37 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 39 H 0.09 0.05 7.90 -2.39 -0.02 0.03 16 40 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.17 -1.05 8.06 -2.91 -0.02 -1.07 16 42 H 0.17 -2.13 4.88 -2.91 -0.01 -2.14 16 Total: 0.00 -30.80 359.87 1.10 -29.70 By element: Atomic # 1 Polarization: -18.69 SS G_CDS: -0.15 Total: -18.84 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 4.82 Total: 11.19 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -4.34 Total: -8.29 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.97 Total: -8.85 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.70 Total: -1.13 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: 2.04 Total: -3.78 kcal Total: -30.80 1.10 -29.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.606 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds