Wall clock time and date at job start Sun Mar 7 2021 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47043 * 2 1 4 4 C 1.50700 * 109.46978 * 119.99830 * 2 1 3 5 5 C 1.38234 * 120.00260 * 65.00134 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.50709 * 109.47444 * 89.99457 * 8 7 6 10 10 O 1.21276 * 119.99531 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00247 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99945 * 180.02562 * 11 9 8 13 13 H 1.08996 * 112.85326 * 23.79783 * 12 11 9 14 14 C 1.53780 * 113.61205 * 154.99766 * 12 11 9 15 15 C 1.53789 * 87.08116 * 139.97825 * 14 12 11 16 16 H 1.08999 * 113.61386 * 89.11159 * 15 14 12 17 17 C 1.52998 * 113.61549 * 219.93253 * 15 14 12 18 18 N 1.46497 * 109.46902 * 184.99755 * 17 15 14 19 19 C 1.34943 * 126.03584 * 124.72000 * 18 17 15 20 20 C 1.35323 * 107.74830 * 179.83582 * 19 18 17 21 21 C 1.39872 * 107.91673 * 0.42491 * 20 19 18 22 22 N 1.30841 * 108.20114 * 359.73150 * 21 20 19 23 23 C 1.53780 * 113.61266 * 252.49305 * 12 11 9 24 24 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 7 6 26 26 H 0.96704 * 114.00337 * 60.00396 * 1 2 3 27 27 H 1.08997 * 109.47550 * 240.00019 * 2 1 3 28 28 H 1.48506 * 109.99870 * 298.67956 * 3 2 1 29 29 H 1.48499 * 110.00179 * 59.99708 * 3 2 1 30 30 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 33 33 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 34 34 H 0.97006 * 119.99744 * 359.97438 * 11 9 8 35 35 H 1.09002 * 113.61529 * 254.52380 * 14 12 11 36 36 H 1.08998 * 113.62024 * 25.34887 * 14 12 11 37 37 H 1.08996 * 109.47428 * 304.99923 * 17 15 14 38 38 H 1.09001 * 109.46842 * 65.00267 * 17 15 14 39 39 H 1.08005 * 126.13019 * 359.97438 * 19 18 17 40 40 H 1.07995 * 126.03978 * 180.15616 * 20 19 18 41 41 H 1.07999 * 125.89985 * 179.72079 * 21 20 19 42 42 H 1.09011 * 113.61475 * 334.56897 * 23 12 11 43 43 H 1.08999 * 113.61566 * 105.46857 * 23 12 11 44 44 H 1.07999 * 119.99934 * 180.25938 * 24 7 6 45 45 H 1.08001 * 120.00294 * 179.76453 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0601 1.3985 6 6 2.1459 -2.7119 2.5269 7 6 2.8490 -2.0127 3.4901 8 6 3.3464 -2.7218 4.7232 9 6 4.7292 -3.2639 4.4677 10 8 5.2588 -3.0909 3.3904 11 7 5.3773 -3.9408 5.4362 12 6 6.7217 -4.4672 5.1880 13 1 7.2475 -3.9302 4.3986 14 6 7.5556 -4.6547 6.4664 15 6 8.0680 -5.9652 5.8458 16 1 8.9623 -5.8389 5.2356 17 6 8.1915 -7.1121 6.8509 18 7 8.7960 -8.2738 6.1942 19 6 9.9014 -8.9309 6.6032 20 6 10.1268 -9.9413 5.7317 21 6 9.1304 -9.8941 4.7512 22 7 8.3321 -8.8950 5.0275 23 6 6.7650 -5.9962 5.0298 24 6 3.1002 -0.6640 3.3196 25 6 2.6395 -0.0124 2.1909 26 1 -0.3934 0.4417 -0.7651 27 1 1.7924 -0.5138 -0.8899 28 1 1.5878 2.4586 -1.2243 29 1 1.5614 2.4680 1.2084 30 1 1.1317 -2.6055 0.6480 31 1 1.9529 -3.7663 2.6583 32 1 3.3795 -2.0206 5.5571 33 1 2.6731 -3.5438 4.9661 34 1 4.9538 -4.0787 6.2980 35 1 8.3316 -3.9003 6.5961 36 1 6.9534 -4.8009 7.3631 37 1 8.8195 -6.7985 7.6847 38 1 7.2017 -7.3785 7.2215 39 1 10.4979 -8.6945 7.4719 40 1 10.9358 -10.6550 5.7817 41 1 9.0363 -10.5662 3.9110 42 1 5.9465 -6.5107 5.5335 43 1 6.9026 -6.3249 3.9996 44 1 3.6532 -0.1187 4.0700 45 1 2.8324 1.0421 2.0595 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:08 Heat of formation + Delta-G solvation = 67.024498 kcal Electronic energy + Delta-G solvation = -26265.913222 eV Core-core repulsion = 22445.559329 eV Total energy + Delta-G solvation = -3820.353893 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03818 -41.30819 -40.45206 -39.33138 -37.76998 -35.08991 -34.20126 -33.41019 -31.95822 -30.95501 -29.95011 -28.35700 -26.69090 -25.87175 -23.99824 -23.83585 -22.17234 -21.89844 -21.45737 -21.39669 -20.55578 -18.59779 -18.27889 -18.02613 -17.66313 -17.06948 -16.92324 -16.47577 -16.25795 -16.00993 -15.59622 -15.30784 -15.22301 -14.86219 -14.81135 -14.61080 -14.38566 -14.00930 -13.96703 -13.63401 -13.54903 -13.45056 -13.37398 -13.06572 -13.04135 -12.78104 -12.29603 -12.17182 -11.96293 -11.81429 -11.74102 -11.59972 -11.33848 -10.91957 -10.52522 -10.32484 -10.00257 -9.89061 -9.62251 -9.47152 -4.95498 0.22100 0.44078 1.02665 1.26054 1.54997 1.64033 1.70445 1.88218 1.97039 2.20710 2.74275 3.36509 3.38189 3.48953 3.63785 3.68701 3.78796 3.84413 3.89271 4.00238 4.03035 4.04819 4.10277 4.25457 4.29145 4.34685 4.40574 4.44443 4.47401 4.60672 4.70595 4.72083 4.75872 4.79115 4.83675 4.93547 5.00739 5.02425 5.06774 5.07433 5.17493 5.26311 5.36223 5.52543 5.57016 5.60495 5.77002 5.99869 6.21681 6.54920 6.59571 6.80980 7.30716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.761 3.239 4 C -0.091 4.091 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.073 4.073 8 C -0.097 4.097 9 C 0.512 3.488 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.117 3.883 13 H 0.087 0.913 14 C -0.113 4.113 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.139 3.861 18 N -0.377 5.377 19 C 0.053 3.947 20 C -0.294 4.294 21 C 0.024 3.976 22 N -0.332 5.332 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.127 4.127 26 H 0.394 0.606 27 H 0.088 0.912 28 H -0.283 1.283 29 H -0.294 1.294 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.419 0.581 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.208 0.792 40 H 0.159 0.841 41 H 0.192 0.808 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.144 0.856 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 0.041 7.647 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.197 4.197 3 Si 0.666 3.334 4 C -0.091 4.091 5 C -0.128 4.128 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.459 6.459 11 N -0.359 5.359 12 C 0.011 3.989 13 H 0.105 0.895 14 C -0.152 4.152 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.019 3.981 18 N -0.159 5.159 19 C -0.094 4.094 20 C -0.323 4.323 21 C -0.161 4.161 22 N -0.154 5.154 23 C -0.173 4.173 24 C -0.127 4.127 25 C -0.144 4.144 26 H 0.244 0.756 27 H 0.106 0.894 28 H -0.210 1.210 29 H -0.221 1.221 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.111 0.889 39 H 0.224 0.776 40 H 0.177 0.823 41 H 0.209 0.791 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.162 0.838 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.127 1.457 7.156 7.606 hybrid contribution -0.617 -0.954 -0.582 1.277 sum 1.510 0.502 6.573 6.763 Atomic orbital electron populations 1.86542 1.18490 1.80751 1.50950 1.25044 0.84068 1.12140 0.98437 0.93998 0.90629 0.72101 0.76664 1.19493 0.99260 0.94445 0.95910 1.21113 0.99216 0.94271 0.98177 1.21245 0.98179 1.00260 0.93857 1.19609 0.97492 0.93996 0.96205 1.20760 0.92819 1.02750 0.97345 1.21038 0.88104 0.77140 0.83708 1.90740 1.69408 1.59327 1.26459 1.45866 1.17147 1.55888 1.17042 1.22399 0.83495 0.93462 0.99497 0.89535 1.23292 0.99298 0.95579 0.97024 1.22501 0.97940 0.95110 0.97682 0.90165 1.22033 1.00736 0.80851 0.94496 1.49010 1.21506 1.25319 1.20092 1.23207 0.90602 0.94205 1.01369 1.21864 1.05611 1.05458 0.99377 1.24315 0.94144 0.96830 1.00809 1.77329 1.24511 1.11745 1.01794 1.23403 0.97856 0.96012 1.00042 1.21217 0.99154 0.94379 0.97973 1.21161 0.99034 1.00050 0.94176 0.75586 0.89406 1.20958 1.22088 0.85793 0.84997 0.84755 0.85463 0.74300 0.89348 0.86243 0.85099 0.88872 0.77576 0.82291 0.79089 0.89018 0.94089 0.83803 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.08 12.81 -148.98 -1.91 -4.99 16 2 C -0.09 -0.32 2.79 71.24 0.20 -0.12 16 3 Si 0.76 0.90 29.85 68.60 2.05 2.95 16 4 C -0.09 -0.65 5.38 -19.86 -0.11 -0.75 16 5 C -0.11 -0.84 9.69 22.27 0.22 -0.62 16 6 C -0.12 -0.68 9.70 22.27 0.22 -0.46 16 7 C -0.07 -0.26 4.37 -19.87 -0.09 -0.35 16 8 C -0.10 0.35 5.83 29.10 0.17 0.52 16 9 C 0.51 1.11 7.82 87.66 0.69 1.80 16 10 O -0.58 -7.56 15.63 -3.02 -0.05 -7.61 16 11 N -0.71 2.86 5.35 -440.05 -2.36 0.50 16 12 C 0.12 -0.17 4.24 45.52 0.19 0.02 16 13 H 0.09 0.42 7.46 -2.39 -0.02 0.41 16 14 C -0.11 0.97 7.39 31.12 0.23 1.20 16 15 C -0.11 0.43 3.82 -10.27 -0.04 0.39 16 16 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 17 C 0.14 -0.80 6.35 86.38 0.55 -0.25 16 18 N -0.38 -0.63 3.68 -348.07 -1.28 -1.91 16 19 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 20 C -0.29 -0.57 10.80 21.99 0.24 -0.33 16 21 C 0.02 0.13 12.03 85.24 1.03 1.15 16 22 N -0.33 -2.65 12.42 -57.02 -0.71 -3.36 16 23 C -0.13 -0.04 7.43 31.12 0.23 0.19 16 24 C -0.11 -0.43 9.70 22.27 0.22 -0.21 16 25 C -0.13 -0.68 8.67 22.27 0.19 -0.49 16 26 H 0.39 -1.14 8.74 -74.05 -0.65 -1.79 16 27 H 0.09 0.05 7.96 -2.39 -0.02 0.03 16 28 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16 29 H -0.29 -2.18 7.05 99.48 0.70 -1.48 16 30 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 31 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 32 H 0.13 -1.28 8.09 -2.39 -0.02 -1.30 16 33 H 0.13 -1.04 8.09 -2.39 -0.02 -1.06 16 34 H 0.42 -4.82 8.73 -92.70 -0.81 -5.63 16 35 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.12 -1.65 8.08 -2.39 -0.02 -1.67 16 37 H 0.13 -1.61 8.07 -2.39 -0.02 -1.63 16 38 H 0.09 -0.65 7.85 -2.39 -0.02 -0.67 16 39 H 0.21 -1.89 8.06 -2.91 -0.02 -1.91 16 40 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 41 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 42 H 0.09 -0.10 7.90 -2.38 -0.02 -0.12 16 43 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 45 H 0.14 0.25 4.87 -2.91 -0.01 0.23 16 Total: 0.00 -29.21 379.99 0.42 -28.79 By element: Atomic # 1 Polarization: -16.56 SS G_CDS: -0.41 Total: -16.97 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.08 Total: 2.59 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -4.34 Total: -4.77 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.96 Total: -12.59 kcal Atomic # 14 Polarization: 0.90 SS G_CDS: 2.05 Total: 2.95 kcal Total: -29.21 0.42 -28.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.814 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds