Wall clock time and date at job start Sun Mar 7 2021 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.34449 * 126.48410 * 104.68584 * 4 2 1 6 6 N 1.36565 * 109.98538 * 179.87144 * 5 4 2 7 7 C 1.37827 * 109.86178 * 0.41058 * 6 5 4 8 8 C 1.38638 * 133.38375 * 179.73415 * 7 6 5 9 9 C 1.39325 * 119.66836 * 180.02562 * 8 7 6 10 10 C 1.47578 * 119.83230 * 179.97438 * 9 8 7 11 11 O 1.21582 * 120.00211 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99698 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99903 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.85056 * 334.66462 * 13 12 10 15 15 C 1.53784 * 113.61697 * 105.86317 * 13 12 10 16 16 C 1.53952 * 87.01975 * 139.95447 * 15 13 12 17 17 H 1.08991 * 113.61965 * 89.20099 * 16 15 13 18 18 C 1.53006 * 113.66385 * 220.07031 * 16 15 13 19 19 N 1.46503 * 109.46914 * 272.55926 * 18 16 15 20 20 C 1.34940 * 126.03886 * 124.71862 * 19 18 16 21 21 C 1.35318 * 107.74643 * 179.83643 * 20 19 18 22 22 C 1.39863 * 107.91807 * 0.42182 * 21 20 19 23 23 N 1.30835 * 108.20320 * 359.73928 * 22 21 20 24 24 C 1.53782 * 113.61514 * 203.47286 * 13 12 10 25 25 C 1.40202 * 120.33417 * 359.97438 * 9 8 7 26 26 C 1.36231 * 120.37661 * 0.02562 * 25 9 8 27 27 C 1.39871 * 119.96074 * 359.97438 * 26 25 9 28 28 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 29 29 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 30 30 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 31 31 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 32 32 H 1.08009 * 125.00726 * 0.02562 * 5 4 2 33 33 H 0.96996 * 125.06856 * 180.13365 * 6 5 4 34 34 H 1.07995 * 120.17130 * 0.02562 * 8 7 6 35 35 H 0.97003 * 120.00340 * 359.97438 * 12 10 9 36 36 H 1.08999 * 113.61535 * 254.53174 * 15 13 12 37 37 H 1.09002 * 113.61545 * 25.43024 * 15 13 12 38 38 H 1.08999 * 109.47377 * 32.55599 * 18 16 15 39 39 H 1.09000 * 109.46894 * 152.56144 * 18 16 15 40 40 H 1.08001 * 126.12841 * 359.97438 * 20 19 18 41 41 H 1.08001 * 126.04036 * 180.15383 * 21 20 19 42 42 H 1.08003 * 125.89607 * 179.71161 * 22 21 20 43 43 H 1.09000 * 113.61596 * 334.56058 * 24 13 12 44 44 H 1.08999 * 113.61783 * 105.38748 * 24 13 12 45 45 H 1.08000 * 119.81199 * 180.02562 * 25 9 8 46 46 H 1.08006 * 120.02167 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4562 -0.1360 -2.3270 6 7 2.8026 -1.0947 -3.2357 7 6 2.4940 -2.3432 -2.7400 8 6 2.6298 -3.6279 -3.2432 9 6 2.2119 -4.7155 -2.4793 10 6 2.3542 -6.0845 -3.0116 11 8 2.8356 -6.2612 -4.1140 12 7 1.9505 -7.1390 -2.2757 13 6 2.0923 -8.4981 -2.8038 14 1 2.1065 -8.5295 -3.8933 15 6 3.2315 -9.2976 -2.1496 16 6 2.2868 -10.5129 -2.1781 17 1 2.3544 -11.0971 -3.0958 18 6 2.3592 -11.3767 -0.9172 19 7 3.4206 -12.3749 -1.0694 20 6 4.4577 -12.5656 -0.2274 21 6 5.2068 -13.5797 -0.7188 22 6 4.6123 -14.0175 -1.9067 23 7 3.5415 -13.2960 -2.1179 24 6 1.1216 -9.5092 -2.1712 25 6 1.6568 -4.5159 -1.2074 26 6 1.5197 -3.2569 -0.7054 27 6 1.9346 -2.1549 -1.4602 28 1 -0.3932 0.4418 0.7651 29 1 1.7924 -0.5139 0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5881 2.4585 1.2242 32 1 2.5870 0.9269 -2.4673 33 1 3.2022 -0.9225 -4.1026 34 1 3.0574 -3.7849 -4.2224 35 1 1.5668 -6.9981 -1.3960 36 1 4.1083 -9.4099 -2.7873 37 1 3.4793 -8.9607 -1.1430 38 1 2.5755 -10.7448 -0.0558 39 1 1.4047 -11.8812 -0.7673 40 1 4.6535 -12.0099 0.6778 41 1 6.1073 -13.9776 -0.2747 42 1 4.9748 -14.8134 -2.5404 43 1 0.7916 -9.2304 -1.1705 44 1 0.2969 -9.7912 -2.8257 45 1 1.3360 -5.3651 -0.6222 46 1 1.0910 -3.1097 0.2750 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:12 Heat of formation + Delta-G solvation = 105.747414 kcal Electronic energy + Delta-G solvation = -29266.246087 eV Core-core repulsion = 25125.693154 eV Total energy + Delta-G solvation = -4140.552933 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.46186 -42.04619 -41.20996 -39.62718 -37.89254 -37.52079 -35.21494 -33.56020 -33.35131 -31.02419 -30.78800 -30.59679 -28.44761 -26.76074 -26.46885 -25.30785 -23.64939 -23.50170 -22.02769 -21.65009 -21.48404 -20.66022 -20.38493 -19.22355 -18.44027 -18.37854 -18.10145 -17.49139 -17.14639 -16.36850 -16.34284 -16.04518 -15.83713 -15.73838 -15.34066 -15.14241 -15.01494 -14.78723 -14.77683 -14.55020 -14.40631 -14.17426 -13.84822 -13.65733 -13.48504 -13.33981 -13.14147 -12.90470 -12.64834 -12.58668 -12.32609 -12.17974 -11.86977 -11.86466 -11.54547 -11.46147 -11.09374 -10.77762 -10.32825 -10.32012 -10.14035 -9.46036 -9.36526 -8.80157 -4.84922 -0.33007 0.38026 1.02482 1.34844 1.39407 1.65595 1.68677 1.86473 1.91440 1.97171 2.01584 2.25456 2.85841 3.37491 3.49826 3.52586 3.56210 3.61111 3.71919 3.77202 3.83541 3.93244 4.04699 4.10538 4.11020 4.19378 4.28775 4.34036 4.38073 4.50528 4.53361 4.58726 4.62386 4.68128 4.76044 4.79240 4.82820 4.92123 4.96916 4.97768 5.02712 5.17164 5.19997 5.23008 5.41256 5.48048 5.55739 5.61376 5.76875 5.98036 6.21563 6.47540 6.50862 6.71246 6.80164 7.14154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.049 4.049 3 Si 0.767 3.233 4 C -0.189 4.189 5 C 0.087 3.913 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.070 4.070 9 C -0.136 4.136 10 C 0.561 3.439 11 O -0.587 6.587 12 N -0.697 5.697 13 C 0.117 3.883 14 H 0.087 0.913 15 C -0.140 4.140 16 C -0.115 4.115 17 H 0.080 0.920 18 C 0.140 3.860 19 N -0.375 5.375 20 C 0.054 3.946 21 C -0.295 4.295 22 C 0.028 3.972 23 N -0.339 5.339 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.081 4.081 27 C -0.081 4.081 28 H 0.391 0.609 29 H 0.086 0.914 30 H -0.288 1.288 31 H -0.290 1.290 32 H 0.202 0.798 33 H 0.434 0.566 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.207 0.793 41 H 0.160 0.840 42 H 0.194 0.806 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.158 0.842 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 3.830 8.362 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.158 4.158 3 Si 0.671 3.329 4 C -0.196 4.196 5 C -0.042 4.042 6 N -0.182 5.182 7 C -0.040 4.040 8 C -0.091 4.091 9 C -0.140 4.140 10 C 0.350 3.650 11 O -0.468 6.468 12 N -0.349 5.349 13 C 0.012 3.988 14 H 0.105 0.895 15 C -0.178 4.178 16 C -0.135 4.135 17 H 0.098 0.902 18 C 0.020 3.980 19 N -0.157 5.157 20 C -0.092 4.092 21 C -0.324 4.324 22 C -0.157 4.157 23 N -0.162 5.162 24 C -0.155 4.155 25 C -0.124 4.124 26 C -0.099 4.099 27 C -0.086 4.086 28 H 0.241 0.759 29 H 0.104 0.896 30 H -0.215 1.215 31 H -0.217 1.217 32 H 0.219 0.781 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.112 0.888 40 H 0.224 0.776 41 H 0.178 0.822 42 H 0.211 0.789 43 H 0.142 0.858 44 H 0.101 0.899 45 H 0.176 0.824 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.025 4.561 6.169 7.672 hybrid contribution -0.241 -0.313 0.364 0.538 sum -0.216 4.247 6.534 7.796 Atomic orbital electron populations 1.86595 1.19219 1.80581 1.50754 1.24289 0.83329 1.11147 0.96999 0.94227 0.90087 0.71566 0.77001 1.19805 1.10633 0.91131 0.98033 1.22202 0.98377 0.95410 0.88256 1.41773 1.54291 1.03355 1.18733 1.18138 1.03952 0.86738 0.95220 1.20129 1.00055 0.88861 1.00057 1.19474 1.06124 0.91562 0.96853 1.18456 0.76801 0.85604 0.84148 1.90767 1.46763 1.86887 1.22410 1.45726 1.63054 1.05013 1.21107 1.22438 0.97800 0.79699 0.98872 0.89522 1.23573 0.96851 0.95151 1.02269 1.22553 0.97870 0.94418 0.98612 0.90160 1.22030 0.89147 0.87751 0.99070 1.48966 1.21501 1.27620 1.17619 1.23186 0.88917 0.99298 0.97808 1.21869 1.06340 1.04053 1.00150 1.24304 0.93422 0.99851 0.98159 1.77266 1.22128 1.05734 1.11058 1.23318 0.96063 0.92601 1.03523 1.20927 0.99413 0.98226 0.93858 1.20432 0.98786 0.90445 1.00281 1.19572 1.01018 0.94118 0.93895 0.75899 0.89594 1.21543 1.21651 0.78117 0.72599 0.85646 0.74276 0.93582 0.87382 0.85073 0.88803 0.77594 0.82238 0.78910 0.85812 0.89916 0.82416 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.83 12.86 -148.98 -1.92 -2.75 16 2 C -0.05 0.09 3.05 71.24 0.22 0.30 16 3 Si 0.77 -3.55 30.80 68.60 2.11 -1.44 16 4 C -0.19 -0.31 5.60 -18.64 -0.10 -0.42 16 5 C 0.09 -0.14 10.43 83.09 0.87 0.72 16 6 N -0.58 0.46 6.07 -187.72 -1.14 -0.68 16 7 C 0.07 0.30 7.26 38.95 0.28 0.58 16 8 C -0.07 -0.45 9.61 22.63 0.22 -0.23 16 9 C -0.14 -0.65 5.87 -20.07 -0.12 -0.77 16 10 C 0.56 4.04 7.76 86.71 0.67 4.71 16 11 O -0.59 -9.59 15.93 -3.97 -0.06 -9.65 16 12 N -0.70 0.63 5.31 -443.16 -2.35 -1.72 16 13 C 0.12 0.00 4.21 45.52 0.19 0.19 16 14 H 0.09 0.57 7.50 -2.39 -0.02 0.55 16 15 C -0.14 0.17 7.45 31.18 0.23 0.40 16 16 C -0.11 0.29 3.87 -10.21 -0.04 0.25 16 17 H 0.08 0.31 7.96 -2.39 -0.02 0.29 16 18 C 0.14 -0.68 6.35 86.38 0.55 -0.13 16 19 N -0.37 -0.90 3.68 -348.05 -1.28 -2.18 16 20 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 21 C -0.29 -0.72 10.80 21.99 0.24 -0.48 16 22 C 0.03 0.16 12.02 85.23 1.02 1.18 16 23 N -0.34 -2.98 12.27 -57.03 -0.70 -3.68 16 24 C -0.12 0.75 7.39 31.12 0.23 0.98 16 25 C -0.10 0.07 9.46 22.28 0.21 0.29 16 26 C -0.08 -0.09 10.03 22.20 0.22 0.13 16 27 C -0.08 -0.35 6.35 -20.14 -0.13 -0.48 16 28 H 0.39 -2.58 8.74 -74.05 -0.65 -3.23 16 29 H 0.09 -0.42 7.96 -2.38 -0.02 -0.44 16 30 H -0.29 -0.26 7.04 99.48 0.70 0.44 16 31 H -0.29 -0.08 7.11 99.48 0.71 0.63 16 32 H 0.20 -1.57 6.31 -2.91 -0.02 -1.59 16 33 H 0.43 -2.76 8.96 -92.71 -0.83 -3.59 16 34 H 0.13 0.94 7.62 -2.91 -0.02 0.91 16 35 H 0.42 -3.44 6.70 -92.71 -0.62 -4.06 16 36 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.11 -0.60 7.90 -2.39 -0.02 -0.62 16 38 H 0.13 -1.55 7.78 -2.39 -0.02 -1.57 16 39 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.21 -1.78 8.06 -2.91 -0.02 -1.81 16 41 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 43 H 0.12 -1.56 8.07 -2.39 -0.02 -1.58 16 44 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.16 -1.36 6.36 -2.91 -0.02 -1.38 16 46 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -31.66 388.54 -0.63 -32.29 By element: Atomic # 1 Polarization: -17.35 SS G_CDS: -1.02 Total: -18.37 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.72 Total: 8.17 kcal Atomic # 7 Polarization: -2.79 SS G_CDS: -5.47 Total: -8.26 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.98 Total: -12.40 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.11 Total: -1.44 kcal Total: -31.66 -0.63 -32.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.042 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds