Wall clock time and date at job start Sun Mar 7 2021 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86294 * 109.46785 * 2 1 4 4 C 1.50697 * 109.46912 * 119.99860 * 2 1 3 5 5 C 1.37942 * 119.92213 * 65.28325 * 4 2 1 6 6 C 1.39597 * 119.87285 * 180.27132 * 5 4 2 7 7 C 1.47851 * 120.14042 * 179.72156 * 6 5 4 8 8 O 1.21548 * 119.99955 * 359.72237 * 7 6 5 9 9 N 1.34778 * 120.00251 * 179.73022 * 7 6 5 10 10 C 1.46490 * 120.00071 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85394 * 23.79887 * 10 9 7 12 12 C 1.53784 * 113.61427 * 154.99934 * 10 9 7 13 13 C 1.53776 * 87.08333 * 139.97986 * 12 10 9 14 14 H 1.09003 * 113.61805 * 89.19956 * 13 12 10 15 15 C 1.53002 * 113.61417 * 220.01648 * 13 12 10 16 16 N 1.46506 * 109.47035 * 184.99705 * 15 13 12 17 17 C 1.34944 * 126.03372 * 125.00124 * 16 15 13 18 18 C 1.35317 * 107.74658 * 179.97438 * 17 16 15 19 19 C 1.39871 * 107.91935 * 0.02562 * 18 17 16 20 20 N 1.30845 * 108.20108 * 359.74200 * 19 18 17 21 21 C 1.53779 * 87.08338 * 334.56558 * 13 12 10 22 22 C 1.39547 * 119.72361 * 359.44882 * 6 5 4 23 23 C 1.38073 * 119.83526 * 0.27646 * 22 6 5 24 24 Br 1.89106 * 119.93413 * 179.97438 * 23 22 6 25 25 C 1.38365 * 119.92168 * 245.00033 * 4 2 1 26 26 H 0.96699 * 114.00036 * 299.99752 * 1 2 3 27 27 H 1.08998 * 109.47003 * 240.00151 * 2 1 3 28 28 H 1.48503 * 110.00312 * 299.99938 * 3 2 1 29 29 H 1.48505 * 109.99967 * 61.31778 * 3 2 1 30 30 H 1.08001 * 120.06349 * 359.97438 * 5 4 2 31 31 H 0.97008 * 119.99839 * 359.97438 * 9 7 6 32 32 H 1.09001 * 113.61609 * 25.42762 * 12 10 9 33 33 H 1.09005 * 113.61238 * 254.52643 * 12 10 9 34 34 H 1.09004 * 109.46930 * 64.99935 * 15 13 12 35 35 H 1.09000 * 109.47312 * 304.99879 * 15 13 12 36 36 H 1.08005 * 126.12990 * 359.96230 * 17 16 15 37 37 H 1.08002 * 126.04160 * 179.97438 * 18 17 16 38 38 H 1.07995 * 125.90070 * 179.97438 * 19 18 17 39 39 H 1.08993 * 113.61704 * 139.97781 * 21 13 12 40 40 H 1.08991 * 113.61544 * 270.88955 * 21 13 12 41 41 H 1.07997 * 120.08305 * 180.29677 * 22 6 5 42 42 H 1.08002 * 119.85589 * 0.02778 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6894 -2.0586 1.3936 6 6 2.1502 -2.7144 2.5365 7 6 1.8888 -4.1579 2.7204 8 8 1.2672 -4.7751 1.8777 9 7 2.3397 -4.7895 3.8223 10 6 2.0803 -6.2197 4.0047 11 1 1.9026 -6.7410 3.0641 12 6 3.1039 -6.9205 4.9135 13 6 1.9214 -7.7015 5.5106 14 1 1.7001 -8.6295 4.9832 15 6 2.0124 -7.8871 7.0266 16 7 0.9108 -8.7392 7.4813 17 6 1.0305 -9.8766 8.1975 18 6 -0.2145 -10.3607 8.4139 19 6 -1.1262 -9.4896 7.8087 20 7 -0.4530 -8.5144 7.2537 21 6 1.0302 -6.5222 5.0867 22 6 2.8635 -2.0030 3.5022 23 6 3.1040 -0.6551 3.3242 24 35 4.0698 0.3118 4.6314 25 6 2.6392 -0.0100 2.1911 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5138 -0.8900 28 1 1.5614 2.4679 -1.2085 29 1 1.5877 2.4585 1.2243 30 1 1.1403 -2.6047 0.6408 31 1 2.8361 -4.2970 4.4947 32 1 3.5879 -6.2503 5.6240 33 1 3.8120 -7.5473 4.3715 34 1 1.9461 -6.9154 7.5162 35 1 2.9631 -8.3569 7.2788 36 1 1.9544 -10.3211 8.5371 37 1 -0.4606 -11.2611 8.9572 38 1 -2.2004 -9.6005 7.8037 39 1 0.0643 -6.8274 4.6845 40 1 0.9472 -5.7432 5.8445 41 1 3.2269 -2.5056 4.3863 42 1 2.8295 1.0446 2.0565 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:39 Heat of formation + Delta-G solvation = 77.819159 kcal Electronic energy + Delta-G solvation = -26684.962092 eV Core-core repulsion = 22680.795907 eV Total energy + Delta-G solvation = -4004.166185 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.052 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07061 -41.68398 -40.53739 -39.34367 -37.83504 -35.35489 -33.83992 -33.64540 -32.71856 -30.94106 -30.47695 -28.59684 -27.06111 -26.73822 -25.81979 -23.65018 -22.85593 -21.91563 -21.71572 -21.49065 -20.66591 -19.16332 -18.33362 -17.91845 -17.75294 -17.35286 -16.66005 -16.53029 -16.44044 -16.11890 -15.76751 -15.66420 -15.28718 -15.00822 -14.91766 -14.85624 -14.29343 -14.22792 -13.93729 -13.55518 -13.50179 -13.44648 -13.30909 -13.06673 -12.96834 -12.30267 -12.26968 -11.97610 -11.86455 -11.83279 -11.62305 -11.47893 -11.37020 -11.19063 -10.71610 -10.40880 -10.32948 -10.10587 -9.92382 -9.48028 -4.98548 -0.53938 -0.17976 0.41715 1.01958 1.19397 1.48531 1.53519 1.68566 1.89501 1.96349 1.98452 2.43311 3.23204 3.30585 3.32903 3.41603 3.46736 3.65703 3.74280 3.79080 3.85666 3.94343 3.98588 4.09608 4.17927 4.20497 4.27040 4.32779 4.39250 4.53085 4.68337 4.70366 4.73651 4.77659 4.80505 4.90801 4.92677 4.96923 5.03631 5.06117 5.14755 5.17298 5.34897 5.48892 5.76171 6.20978 6.34796 6.40365 6.80236 7.01622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.085 4.085 3 Si 0.765 3.235 4 C -0.113 4.113 5 C -0.030 4.030 6 C -0.136 4.136 7 C 0.558 3.442 8 O -0.576 6.576 9 N -0.698 5.698 10 C 0.114 3.886 11 H 0.093 0.907 12 C -0.113 4.113 13 C -0.111 4.111 14 H 0.083 0.917 15 C 0.138 3.862 16 N -0.377 5.377 17 C 0.053 3.947 18 C -0.294 4.294 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.135 4.135 22 C -0.042 4.042 23 C -0.099 4.099 24 Br -0.027 7.027 25 C -0.062 4.062 26 H 0.388 0.612 27 H 0.130 0.870 28 H -0.297 1.297 29 H -0.272 1.272 30 H 0.129 0.871 31 H 0.416 0.584 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.208 0.792 37 H 0.159 0.841 38 H 0.192 0.808 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.164 0.836 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.378 0.336 5.269 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.194 4.194 3 Si 0.669 3.331 4 C -0.114 4.114 5 C -0.050 4.050 6 C -0.140 4.140 7 C 0.346 3.654 8 O -0.457 6.457 9 N -0.349 5.349 10 C 0.010 3.990 11 H 0.111 0.889 12 C -0.152 4.152 13 C -0.131 4.131 14 H 0.101 0.899 15 C 0.018 3.982 16 N -0.159 5.159 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.154 5.154 21 C -0.174 4.174 22 C -0.062 4.062 23 C -0.178 4.178 24 Br 0.059 6.941 25 C -0.082 4.082 26 H 0.237 0.763 27 H 0.148 0.852 28 H -0.225 1.225 29 H -0.198 1.198 30 H 0.147 0.853 31 H 0.255 0.745 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.150 0.850 36 H 0.225 0.775 37 H 0.177 0.823 38 H 0.209 0.791 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.182 0.818 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.252 1.940 3.933 9.344 hybrid contribution -1.724 -1.142 0.686 2.179 sum 6.527 0.798 4.619 8.036 Atomic orbital electron populations 1.86620 1.18216 1.80397 1.50205 1.25332 0.83684 1.12282 0.98089 0.94130 0.90118 0.71526 0.77301 1.20245 0.99896 0.93810 0.97483 1.21273 0.94125 0.93819 0.95770 1.19877 1.03730 0.93128 0.97300 1.18434 0.78308 0.86913 0.81702 1.90801 1.42126 1.68190 1.44551 1.45777 1.56577 1.10434 1.22110 1.22565 0.97856 0.80249 0.98370 0.88910 1.23317 0.95512 0.98438 0.97911 1.22490 0.97912 0.97938 0.94711 0.89852 1.22040 0.86818 0.95441 0.93858 1.49005 1.05246 1.19867 1.41810 1.23204 1.01465 0.88625 0.96015 1.21862 0.92057 1.05772 1.12618 1.24309 1.01522 0.92998 0.97277 1.77330 0.88087 1.24744 1.25226 1.23421 0.97526 0.98141 0.98291 1.21463 0.94216 0.92203 0.98358 1.21736 1.04125 0.95238 0.96727 1.96861 1.72244 1.73494 1.51541 1.21426 0.94440 1.00866 0.91431 0.76286 0.85250 1.22515 1.19791 0.85298 0.74484 0.86154 0.88930 0.88870 0.84967 0.77547 0.82309 0.79139 0.93740 0.88959 0.81844 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.46 12.83 -148.98 -1.91 -3.38 16 2 C -0.09 0.11 2.80 71.23 0.20 0.31 16 3 Si 0.77 -2.62 29.87 68.60 2.05 -0.57 16 4 C -0.11 0.09 5.34 -19.91 -0.11 -0.01 16 5 C -0.03 -0.09 9.23 22.53 0.21 0.12 16 6 C -0.14 -0.20 5.87 -20.09 -0.12 -0.32 16 7 C 0.56 2.86 7.77 86.79 0.67 3.54 16 8 O -0.58 -8.42 15.95 -3.87 -0.06 -8.49 16 9 N -0.70 1.52 5.31 -442.91 -2.35 -0.83 16 10 C 0.11 -0.14 4.24 45.52 0.19 0.06 16 11 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 12 C -0.11 0.99 7.39 31.12 0.23 1.22 16 13 C -0.11 0.47 3.83 -10.27 -0.04 0.43 16 14 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 15 C 0.14 -0.84 6.35 86.38 0.55 -0.29 16 16 N -0.38 -0.55 3.68 -348.04 -1.28 -1.83 16 17 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 18 C -0.29 -0.55 10.80 21.99 0.24 -0.31 16 19 C 0.02 0.13 12.03 85.24 1.03 1.15 16 20 N -0.33 -2.61 12.42 -57.02 -0.71 -3.32 16 21 C -0.13 -0.03 7.43 31.12 0.23 0.20 16 22 C -0.04 0.16 9.28 22.55 0.21 0.36 16 23 C -0.10 0.29 6.22 22.27 0.14 0.43 16 24 Br -0.03 0.09 33.69 -20.37 -0.69 -0.59 16 25 C -0.06 0.18 8.40 22.34 0.19 0.37 16 26 H 0.39 -1.29 8.70 -74.06 -0.64 -1.93 16 27 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H -0.30 -1.34 7.11 99.48 0.71 -0.63 16 29 H -0.27 0.19 7.00 99.48 0.70 0.89 16 30 H 0.13 0.86 7.65 -2.91 -0.02 0.83 16 31 H 0.42 -3.83 6.76 -92.70 -0.63 -4.46 16 32 H 0.12 -1.69 8.08 -2.39 -0.02 -1.70 16 33 H 0.09 -0.88 8.14 -2.38 -0.02 -0.90 16 34 H 0.09 -0.67 7.84 -2.38 -0.02 -0.69 16 35 H 0.13 -1.68 8.07 -2.39 -0.02 -1.70 16 36 H 0.21 -1.93 8.06 -2.91 -0.02 -1.95 16 37 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 38 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 39 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.09 -0.10 7.90 -2.39 -0.02 -0.11 16 41 H 0.16 -1.59 6.40 -2.91 -0.02 -1.61 16 42 H 0.16 -0.93 4.82 -2.91 -0.01 -0.94 16 Total: 0.00 -25.30 376.55 -0.34 -25.64 By element: Atomic # 1 Polarization: -14.62 SS G_CDS: -0.16 Total: -14.78 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.78 Total: 8.15 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -4.34 Total: -5.98 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.97 Total: -11.86 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.05 Total: -0.57 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.59 kcal Total: -25.30 -0.34 -25.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.457 kcal (2) G-P(sol) polarization free energy of solvation -25.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds