Wall clock time and date at job start Sun Mar 7 2021 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47286 * 2 1 4 4 C 1.52999 * 109.47081 * 186.45633 * 3 2 1 5 5 C 1.52999 * 109.46805 * 66.46222 * 3 2 1 6 6 C 1.50703 * 109.47096 * 181.32707 * 5 3 2 7 7 O 1.21284 * 119.99896 * 245.75258 * 6 5 3 8 8 N 1.34782 * 120.00199 * 65.74802 * 6 5 3 9 9 C 1.46494 * 119.99805 * 175.02864 * 8 6 5 10 10 H 1.08998 * 112.85176 * 334.66605 * 9 8 6 11 11 C 1.53788 * 113.61491 * 105.86453 * 9 8 6 12 12 C 1.53947 * 87.01986 * 139.95037 * 11 9 8 13 13 H 1.09006 * 113.61819 * 89.20129 * 12 11 9 14 14 C 1.53000 * 113.66627 * 220.06657 * 12 11 9 15 15 N 1.46498 * 109.47338 * 272.55932 * 14 12 11 16 16 C 1.34945 * 126.03851 * 124.99989 * 15 14 12 17 17 C 1.35316 * 107.74838 * 179.97438 * 16 15 14 18 18 C 1.39870 * 107.91838 * 359.97438 * 17 16 15 19 19 N 1.30829 * 108.20323 * 359.74602 * 18 17 16 20 20 C 1.53780 * 113.61173 * 203.46879 * 9 8 6 21 21 N 1.46491 * 109.47573 * 61.32392 * 5 3 2 22 22 C 1.36344 * 125.63982 * 66.02332 * 21 5 3 23 23 C 1.34846 * 108.21979 * 180.26633 * 22 21 5 24 24 C 1.40890 * 107.41968 * 359.73478 * 23 22 21 25 25 C 1.34851 * 107.41524 * 0.02562 * 24 23 22 26 26 C 1.50700 * 125.89138 * 179.97438 * 25 24 23 27 27 O 1.42896 * 109.47238 * 150.02241 * 26 25 24 28 28 Si 1.86304 * 109.47069 * 30.02657 * 26 25 24 29 29 H 1.09000 * 109.47333 * 304.65987 * 1 2 3 30 30 H 1.08998 * 109.47112 * 64.65666 * 1 2 3 31 31 H 1.09002 * 109.47683 * 184.65822 * 1 2 3 32 32 H 1.09010 * 109.46835 * 240.00257 * 2 1 3 33 33 H 1.08994 * 109.47422 * 120.00625 * 2 1 3 34 34 H 1.08994 * 109.47425 * 306.45905 * 3 2 1 35 35 H 1.09006 * 109.47448 * 309.28323 * 4 3 2 36 36 H 1.09003 * 109.47151 * 69.28516 * 4 3 2 37 37 H 1.09004 * 109.47118 * 189.28500 * 4 3 2 38 38 H 1.09006 * 109.46963 * 301.31740 * 5 3 2 39 39 H 0.96999 * 119.99789 * 355.02838 * 8 6 5 40 40 H 1.09005 * 113.61174 * 254.53141 * 11 9 8 41 41 H 1.08997 * 113.61238 * 25.42746 * 11 9 8 42 42 H 1.09003 * 109.47134 * 32.56245 * 14 12 11 43 43 H 1.09009 * 109.47470 * 152.55843 * 14 12 11 44 44 H 1.08008 * 126.12537 * 359.95174 * 16 15 14 45 45 H 1.08004 * 126.03957 * 180.02562 * 17 16 15 46 46 H 1.07999 * 125.89420 * 179.97438 * 18 17 16 47 47 H 1.08994 * 113.61719 * 334.56707 * 20 9 8 48 48 H 1.09004 * 113.61190 * 105.47584 * 20 9 8 49 49 H 1.08004 * 125.88772 * 0.02562 * 22 21 5 50 50 H 1.08008 * 126.29025 * 179.71264 * 23 22 21 51 51 H 1.08004 * 126.29384 * 180.02562 * 24 23 22 52 52 H 1.09000 * 109.47177 * 270.02761 * 26 25 24 53 53 H 0.96696 * 114.00536 * 300.00619 * 27 26 25 54 54 H 1.48492 * 110.00172 * 179.97438 * 28 26 25 55 55 H 1.48507 * 109.99895 * 301.31928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5613 1.4454 -0.1622 5 6 1.6668 2.1152 1.3225 6 6 2.1406 3.5458 1.3095 7 8 3.0090 3.9040 2.0767 8 7 1.5993 4.4272 0.4454 9 6 1.9805 5.8404 0.5056 10 1 2.3277 6.1434 1.4934 11 6 2.9144 6.2758 -0.6360 12 6 2.1018 7.5820 -0.6947 13 1 2.4823 8.3630 -0.0363 14 6 1.8412 8.0797 -2.1179 15 7 2.9592 8.9200 -2.5538 16 6 3.6972 8.7433 -3.6697 17 6 4.6259 9.7267 -3.7100 18 6 4.4490 10.5322 -2.5803 19 7 3.4466 10.0530 -1.8896 20 6 0.9290 6.7881 -0.0953 21 7 2.3036 1.4000 2.4311 22 6 3.6452 1.3260 2.6625 23 6 3.8418 0.5786 3.7675 24 6 2.5749 0.1814 4.2390 25 6 1.6524 0.7009 3.4038 26 6 0.1595 0.5325 3.5216 27 8 -0.4937 1.6828 2.9812 28 14 -0.3041 0.3409 5.3158 29 1 -0.3634 0.5844 0.8453 30 1 -0.3633 0.4399 -0.9287 31 1 -0.3634 -1.0243 0.0835 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5854 1.9886 -0.8265 35 1 4.0057 0.7661 0.5653 36 1 3.8200 1.1189 -1.1695 37 1 3.9423 2.4535 0.0021 38 1 0.5844 2.0922 1.4491 39 1 0.9574 4.1258 -0.2164 40 1 3.9490 6.4177 -0.3236 41 1 2.8222 5.6635 -1.5330 42 1 1.7446 7.2264 -2.7892 43 1 0.9200 8.6623 -2.1361 44 1 3.5696 7.9576 -4.3997 45 1 5.3714 9.8655 -4.4791 46 1 5.0361 11.4019 -2.3246 47 1 0.2931 6.3163 -0.8443 48 1 0.3632 7.3433 0.6529 49 1 4.4175 1.7836 2.0620 50 1 4.7953 0.3297 4.2097 51 1 2.3787 -0.4272 5.1094 52 1 -0.1508 -0.3545 2.9694 53 1 -0.2640 2.5105 3.4252 54 1 -1.7740 0.1747 5.4457 55 1 0.3937 -0.8336 5.8981 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:42 Heat of formation + Delta-G solvation = 99.046025 kcal Electronic energy + Delta-G solvation = -35817.490391 eV Core-core repulsion = 31439.174809 eV Total energy + Delta-G solvation = -4378.315582 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.90331 -42.04983 -41.04508 -39.54367 -37.87109 -37.60338 -35.17052 -33.54587 -32.97877 -31.50589 -30.99065 -30.62154 -28.94069 -27.80805 -26.74897 -26.04345 -24.79580 -24.06199 -22.23273 -22.04837 -21.75813 -21.55021 -21.40031 -20.62502 -20.18488 -18.71046 -18.25464 -18.17391 -17.38473 -16.95901 -16.80905 -16.32156 -16.29124 -16.02402 -15.75168 -15.36733 -15.29398 -15.09437 -14.75875 -14.68376 -14.56086 -14.41098 -14.31724 -14.12418 -14.04216 -13.74891 -13.66382 -13.50703 -13.46453 -13.32219 -13.22099 -12.87465 -12.84843 -12.34871 -12.23494 -12.19237 -11.99066 -11.89162 -11.87747 -11.79820 -11.62996 -11.55358 -11.46169 -11.04853 -10.58235 -10.32991 -10.12330 -9.53670 -9.46698 -8.87435 -4.92856 1.00525 1.03140 1.37150 1.44261 1.61543 1.68032 1.79153 1.93485 1.95621 2.12523 2.30297 3.21720 3.35263 3.43167 3.49608 3.53376 3.57257 3.63160 3.77030 3.79918 3.91973 3.95929 4.08876 4.17974 4.19444 4.26827 4.31943 4.34163 4.45464 4.48790 4.51249 4.57796 4.60741 4.63272 4.67504 4.68465 4.73142 4.76642 4.81132 4.84869 4.91011 4.95777 4.96966 5.03339 5.13385 5.15237 5.16159 5.20833 5.26455 5.30717 5.38297 5.42765 5.52043 5.75373 6.01972 6.20292 6.25799 6.30897 6.49203 6.52123 6.78626 7.10045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.161 4.161 5 C 0.101 3.899 6 C 0.509 3.491 7 O -0.562 6.562 8 N -0.697 5.697 9 C 0.124 3.876 10 H 0.087 0.913 11 C -0.140 4.140 12 C -0.117 4.117 13 H 0.079 0.921 14 C 0.139 3.861 15 N -0.375 5.375 16 C 0.054 3.946 17 C -0.295 4.295 18 C 0.027 3.973 19 N -0.338 5.338 20 C -0.115 4.115 21 N -0.408 5.408 22 C 0.018 3.982 23 C -0.227 4.227 24 C -0.209 4.209 25 C -0.016 4.016 26 C -0.038 4.038 27 O -0.544 6.544 28 Si 0.781 3.219 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.169 0.831 39 H 0.419 0.581 40 H 0.042 0.958 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.207 0.793 45 H 0.159 0.841 46 H 0.194 0.806 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.155 0.845 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.118 0.882 53 H 0.392 0.608 54 H -0.284 1.284 55 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 -0.186 -6.410 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.107 4.107 4 C -0.218 4.218 5 C -0.004 4.004 6 C 0.294 3.706 7 O -0.440 6.440 8 N -0.350 5.350 9 C 0.019 3.981 10 H 0.105 0.895 11 C -0.179 4.179 12 C -0.136 4.136 13 H 0.097 0.903 14 C 0.019 3.981 15 N -0.157 5.157 16 C -0.092 4.092 17 C -0.324 4.324 18 C -0.158 4.158 19 N -0.161 5.161 20 C -0.154 4.154 21 N -0.083 5.083 22 C -0.113 4.113 23 C -0.251 4.251 24 C -0.234 4.234 25 C -0.127 4.127 26 C -0.149 4.149 27 O -0.352 6.352 28 Si 0.686 3.314 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.185 0.815 39 H 0.257 0.743 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.177 0.823 46 H 0.211 0.789 47 H 0.141 0.859 48 H 0.102 0.898 49 H 0.172 0.828 50 H 0.153 0.847 51 H 0.156 0.844 52 H 0.135 0.865 53 H 0.242 0.758 54 H -0.211 1.211 55 H -0.215 1.215 Dipole moment (debyes) X Y Z Total from point charges -6.168 -0.647 -4.834 7.863 hybrid contribution 1.345 -0.345 -1.170 1.815 sum -4.823 -0.993 -6.003 7.764 Atomic orbital electron populations 1.21936 0.94590 1.02177 1.03096 1.21498 0.96827 0.94849 1.02043 1.21517 0.96933 0.97660 0.94587 1.22151 0.95230 1.01398 1.03028 1.22109 1.02632 0.88018 0.87658 1.20855 0.81537 0.87988 0.80204 1.90793 1.31567 1.79848 1.41745 1.45751 1.46080 1.07465 1.35664 1.22357 0.97136 0.79684 0.98896 0.89476 1.23556 0.98068 0.96450 0.99796 1.22563 0.98634 0.96328 0.96115 0.90305 1.22037 0.86211 0.93731 0.96085 1.48978 1.27257 1.21563 1.17928 1.23171 0.93215 1.01278 0.91563 1.21868 1.06748 1.00419 1.03390 1.24302 0.96059 1.01053 0.94358 1.77264 1.15578 1.00785 1.22441 1.23310 0.95620 0.95617 1.00830 1.43506 1.05227 1.39197 1.20384 1.21811 0.85253 1.03765 1.00463 1.21008 0.98394 1.06204 0.99462 1.20769 0.92616 1.07483 1.02484 1.20857 0.94985 1.03865 0.93012 1.24794 0.86004 0.91609 1.12463 1.86291 1.69516 1.17886 1.61482 0.93042 0.76378 0.86877 0.75144 0.91520 0.91121 0.93168 0.90951 0.93492 0.86626 0.92444 0.90836 0.93606 0.81453 0.74338 0.93896 0.87556 0.85174 0.88905 0.77647 0.82312 0.78943 0.85873 0.89785 0.82769 0.84653 0.84384 0.86471 0.75818 1.21100 1.21472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.79 9.79 71.98 0.70 1.50 16 2 C -0.11 0.36 5.32 30.59 0.16 0.53 16 3 C -0.09 0.43 2.21 -10.80 -0.02 0.41 16 4 C -0.16 0.24 7.65 71.98 0.55 0.79 16 5 C 0.10 -0.26 2.21 44.25 0.10 -0.16 16 6 C 0.51 0.01 5.73 87.66 0.50 0.51 16 7 O -0.56 -5.47 14.60 -3.04 -0.04 -5.51 16 8 N -0.70 4.76 5.33 -440.03 -2.35 2.41 16 9 C 0.12 -0.55 4.18 45.52 0.19 -0.36 16 10 H 0.09 0.19 7.57 -2.39 -0.02 0.17 16 11 C -0.14 0.57 7.45 31.18 0.23 0.81 16 12 C -0.12 0.57 3.87 -10.21 -0.04 0.53 16 13 H 0.08 0.15 7.97 -2.38 -0.02 0.13 16 14 C 0.14 -0.90 6.35 86.38 0.55 -0.35 16 15 N -0.37 -0.45 3.68 -348.05 -1.28 -1.73 16 16 C 0.05 -0.07 11.45 83.54 0.96 0.89 16 17 C -0.29 -0.49 10.80 21.99 0.24 -0.25 16 18 C 0.03 0.13 12.03 85.24 1.02 1.16 16 19 N -0.34 -2.60 12.28 -57.03 -0.70 -3.30 16 20 C -0.12 1.12 7.39 31.12 0.23 1.35 16 21 N -0.41 -1.15 1.73 -491.52 -0.85 -2.00 16 22 C 0.02 0.13 7.29 83.21 0.61 0.73 16 23 C -0.23 -1.83 10.86 22.14 0.24 -1.59 16 24 C -0.21 -1.29 9.43 22.14 0.21 -1.08 16 25 C -0.02 -0.05 5.87 41.08 0.24 0.19 16 26 C -0.04 0.06 2.51 71.24 0.18 0.24 16 27 O -0.54 2.57 8.88 -148.98 -1.32 1.25 16 28 Si 0.78 -1.08 31.31 68.60 2.15 1.07 16 29 H 0.07 -0.29 4.74 -2.39 -0.01 -0.30 16 30 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.05 0.09 7.21 -2.39 -0.02 0.07 16 34 H 0.12 -1.20 7.80 -2.39 -0.02 -1.22 16 35 H 0.06 0.13 5.58 -2.38 -0.01 0.11 16 36 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.04 0.06 6.80 -2.39 -0.02 0.04 16 38 H 0.17 -0.91 3.54 -2.38 -0.01 -0.91 16 39 H 0.42 -5.68 8.38 -92.71 -0.78 -6.46 16 40 H 0.04 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.11 -0.88 7.90 -2.39 -0.02 -0.89 16 42 H 0.13 -1.74 7.78 -2.39 -0.02 -1.76 16 43 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 44 H 0.21 -1.97 8.06 -2.91 -0.02 -1.99 16 45 H 0.16 -0.32 8.06 -2.91 -0.02 -0.35 16 46 H 0.19 0.05 8.06 -2.91 -0.02 0.02 16 47 H 0.12 -1.93 8.07 -2.39 -0.02 -1.95 16 48 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 49 H 0.15 1.18 6.24 -2.91 -0.02 1.16 16 50 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 51 H 0.14 0.68 6.68 -2.91 -0.02 0.66 16 52 H 0.12 -0.18 7.80 -2.39 -0.02 -0.20 16 53 H 0.39 -3.58 8.70 -74.06 -0.64 -4.23 16 54 H -0.28 -1.06 7.11 99.48 0.71 -0.35 16 55 H -0.29 -1.30 6.78 99.48 0.67 -0.62 16 Total: 0.00 -24.56 426.06 1.95 -22.61 By element: Atomic # 1 Polarization: -20.13 SS G_CDS: -0.50 Total: -20.64 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.85 Total: 5.84 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -5.18 Total: -4.62 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -1.37 Total: -4.26 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.15 Total: 1.07 kcal Total: -24.56 1.95 -22.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.654 kcal (2) G-P(sol) polarization free energy of solvation -24.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds