Wall clock time and date at job start Sun Mar 7 2021 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47174 * 2 1 4 4 C 1.50706 * 109.46885 * 119.99926 * 2 1 3 5 5 C 1.38185 * 119.84391 * 254.97808 * 4 2 1 6 6 C 1.38313 * 120.14660 * 179.76662 * 5 4 2 7 7 F 1.35093 * 120.08704 * 180.27601 * 6 5 4 8 8 C 1.39803 * 119.82790 * 0.53658 * 6 5 4 9 9 C 1.47694 * 120.15575 * 179.74827 * 8 6 5 10 10 O 1.21575 * 119.99974 * 359.71582 * 9 8 6 11 11 N 1.34773 * 120.00477 * 179.71809 * 9 8 6 12 12 C 1.46501 * 120.00122 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.90929 * 336.25213 * 12 11 9 14 14 C 1.53962 * 113.66387 * 107.55425 * 12 11 9 15 15 C 1.53782 * 87.11063 * 139.88885 * 14 12 11 16 16 H 1.08997 * 113.61225 * 89.18406 * 15 14 12 17 17 C 1.52998 * 113.68747 * 220.07804 * 15 14 12 18 18 N 1.46499 * 109.46882 * 272.53320 * 17 15 14 19 19 C 1.34947 * 126.03226 * 124.72188 * 18 17 15 20 20 C 1.35320 * 107.74512 * 179.83722 * 19 18 17 21 21 C 1.39866 * 107.92044 * 0.42292 * 20 19 18 22 22 N 1.30835 * 108.20162 * 359.73691 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 24 24 C 1.39654 * 119.69050 * 359.46528 * 8 6 5 25 25 C 1.38070 * 119.85311 * 0.25862 * 24 8 6 26 26 F 1.35098 * 119.91599 * 180.02562 * 25 24 8 27 27 H 0.96703 * 114.00015 * 300.00070 * 1 2 3 28 28 H 1.08995 * 109.47495 * 239.99973 * 2 1 3 29 29 H 1.48498 * 109.99779 * 178.67734 * 3 2 1 30 30 H 1.48492 * 109.99961 * 300.00251 * 3 2 1 31 31 H 1.07997 * 119.92695 * 0.02562 * 5 4 2 32 32 H 0.97002 * 120.00080 * 0.02562 * 11 9 8 33 33 H 1.08997 * 113.53543 * 25.33559 * 14 12 11 34 34 H 1.08994 * 113.66446 * 254.45762 * 14 12 11 35 35 H 1.08995 * 109.47742 * 32.53801 * 17 15 14 36 36 H 1.09003 * 109.47049 * 152.53819 * 17 15 14 37 37 H 1.08003 * 126.13312 * 359.97438 * 19 18 17 38 38 H 1.07999 * 126.04183 * 180.15607 * 20 19 18 39 39 H 1.07995 * 125.90536 * 179.71635 * 21 20 19 40 40 H 1.09002 * 113.61445 * 139.98212 * 23 15 14 41 41 H 1.09002 * 113.61408 * 270.79943 * 23 15 14 42 42 H 1.08001 * 120.07294 * 180.28034 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4534 0.0197 2.2812 6 6 2.9117 -0.6255 3.4155 7 9 3.4168 0.0898 4.4441 8 6 2.8560 -2.0203 3.4924 9 6 3.3486 -2.7171 4.6979 10 8 3.8085 -2.0780 5.6242 11 7 3.2882 -4.0615 4.7713 12 6 3.7773 -4.7526 5.9668 13 1 4.5117 -4.1701 6.5230 14 6 2.6556 -5.3332 6.8473 15 6 3.5563 -6.5635 7.0479 16 1 4.2302 -6.4769 7.9002 17 6 2.7971 -7.8916 7.0231 18 7 2.3124 -8.2022 8.3702 19 6 1.0326 -8.4570 8.7142 20 6 1.0038 -8.6993 10.0452 21 6 2.3091 -8.5791 10.5329 22 7 3.0944 -8.2812 9.5298 23 6 4.2128 -6.2040 5.7045 24 6 2.3270 -2.7514 2.4266 25 6 1.8679 -2.0936 1.3028 26 9 1.3554 -2.7995 0.2712 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5138 -0.8899 29 1 3.5346 1.7702 0.0322 30 1 1.5615 2.4679 -1.2084 31 1 2.4998 1.0969 2.2182 32 1 2.9215 -4.5716 4.0321 33 1 1.7387 -5.5481 6.2985 34 1 2.4799 -4.7670 7.7619 35 1 1.9504 -7.8136 6.3412 36 1 3.4639 -8.6849 6.6850 37 1 0.1838 -8.4681 8.0465 38 1 0.1270 -8.9385 10.6287 39 1 2.6159 -8.7094 11.5602 40 1 5.2942 -6.3407 5.6966 41 1 3.7224 -6.6582 4.8435 42 1 2.2768 -3.8288 2.4814 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:51 Heat of formation + Delta-G solvation = -12.482612 kcal Electronic energy + Delta-G solvation = -29701.631961 eV Core-core repulsion = 25094.460049 eV Total energy + Delta-G solvation = -4607.171912 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.12053 -50.11217 -42.07185 -41.52811 -40.33563 -39.36478 -37.64076 -35.36629 -33.89361 -32.89584 -31.38613 -30.97321 -28.75415 -27.69233 -26.76673 -24.77468 -24.40399 -23.30253 -22.04389 -21.96796 -21.54820 -20.63961 -19.55337 -18.79982 -18.68534 -18.19390 -17.91976 -17.38581 -17.22183 -16.87965 -16.58380 -16.33539 -16.22144 -16.11663 -15.88148 -15.78163 -15.54962 -15.32406 -15.07557 -14.67944 -14.51883 -14.21754 -14.19061 -13.83196 -13.66850 -13.50207 -13.36447 -13.15936 -13.03642 -12.88189 -12.39405 -12.32691 -12.18613 -11.88739 -11.56071 -11.48438 -11.22783 -10.62641 -10.60092 -10.32968 -10.19246 -9.83613 -9.46785 -5.06247 -0.82947 -0.32044 1.01525 1.15039 1.36152 1.60849 1.67562 1.85115 1.92611 1.96390 2.21627 2.77639 2.83181 3.10631 3.27371 3.36149 3.46745 3.47742 3.53754 3.55430 3.73324 3.79626 3.91639 4.09770 4.14304 4.18284 4.30342 4.31283 4.33967 4.49690 4.53229 4.60812 4.65993 4.67859 4.71088 4.75031 4.80555 4.90378 4.94924 5.00760 5.13643 5.17351 5.36409 5.47155 5.76025 6.20732 6.29970 6.67359 6.79260 6.97653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.076 4.076 3 Si 0.776 3.224 4 C -0.097 4.097 5 C -0.121 4.121 6 C 0.139 3.861 7 F -0.124 7.124 8 C -0.149 4.149 9 C 0.557 3.443 10 O -0.564 6.564 11 N -0.694 5.694 12 C 0.118 3.882 13 H 0.091 0.909 14 C -0.140 4.140 15 C -0.116 4.116 16 H 0.080 0.920 17 C 0.140 3.860 18 N -0.375 5.375 19 C 0.055 3.945 20 C -0.295 4.295 21 C 0.028 3.972 22 N -0.339 5.339 23 C -0.117 4.117 24 C -0.076 4.076 25 C 0.100 3.900 26 F -0.129 7.129 27 H 0.399 0.601 28 H 0.115 0.885 29 H -0.281 1.281 30 H -0.290 1.290 31 H 0.180 0.820 32 H 0.418 0.582 33 H 0.109 0.891 34 H 0.047 0.953 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.207 0.793 38 H 0.160 0.840 39 H 0.194 0.806 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -2.461 -3.678 6.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.186 4.186 3 Si 0.680 3.320 4 C -0.099 4.099 5 C -0.139 4.139 6 C 0.118 3.882 7 F -0.102 7.102 8 C -0.153 4.153 9 C 0.344 3.656 10 O -0.443 6.443 11 N -0.346 5.346 12 C 0.013 3.987 13 H 0.109 0.891 14 C -0.178 4.178 15 C -0.136 4.136 16 H 0.099 0.901 17 C 0.020 3.980 18 N -0.157 5.157 19 C -0.092 4.092 20 C -0.324 4.324 21 C -0.157 4.157 22 N -0.161 5.161 23 C -0.155 4.155 24 C -0.095 4.095 25 C 0.081 3.919 26 F -0.107 7.107 27 H 0.250 0.750 28 H 0.132 0.868 29 H -0.207 1.207 30 H -0.218 1.218 31 H 0.197 0.803 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.177 0.823 39 H 0.211 0.789 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.247 -1.483 -4.496 5.240 hybrid contribution -0.671 -0.856 0.178 1.102 sum -2.918 -2.339 -4.318 5.712 Atomic orbital electron populations 1.86556 1.16148 1.82114 1.50595 1.25237 0.86059 1.11301 0.95967 0.93809 0.78306 0.74171 0.85734 1.20573 0.98971 0.92754 0.97557 1.20990 1.00050 1.02039 0.90788 1.17837 0.96196 0.88482 0.85641 1.91609 1.84053 1.77539 1.56967 1.19833 1.06475 0.92467 0.96571 1.18155 0.78245 0.83293 0.85902 1.90878 1.46632 1.66944 1.39884 1.45711 1.62893 1.05181 1.20791 1.22510 0.97131 0.92728 0.86361 0.89109 1.23582 0.98511 0.96163 0.99579 1.22521 0.98408 0.93409 0.99231 0.90138 1.22031 1.01176 0.96949 0.77882 1.48971 1.05441 1.53474 1.07861 1.23183 0.88851 0.99535 0.97623 1.21871 0.98789 1.16540 0.95209 1.24303 0.92808 0.99168 0.99458 1.77267 1.20973 1.25345 0.92559 1.23332 1.02447 0.92438 0.97330 1.21338 0.95870 1.02429 0.89840 1.17382 0.99339 0.89122 0.86091 1.91569 1.84415 1.78207 1.56525 0.75015 0.86756 1.20737 1.21756 0.80300 0.74220 0.87255 0.93403 0.85050 0.88877 0.77590 0.82278 0.78935 0.89870 0.85772 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.66 12.88 -148.98 -1.92 -0.26 16 2 C -0.08 0.29 2.44 71.24 0.17 0.47 16 3 Si 0.78 -4.08 29.90 68.60 2.05 -2.03 16 4 C -0.10 0.36 5.27 -19.78 -0.10 0.26 16 5 C -0.12 0.49 8.62 22.28 0.19 0.68 16 6 C 0.14 0.20 7.28 22.67 0.17 0.37 16 7 F -0.12 -0.94 15.55 44.97 0.70 -0.24 16 8 C -0.15 0.06 5.88 -20.06 -0.12 -0.06 16 9 C 0.56 1.89 7.77 86.74 0.67 2.57 16 10 O -0.56 -7.59 14.94 -3.95 -0.06 -7.65 16 11 N -0.69 3.11 5.31 -442.75 -2.35 0.76 16 12 C 0.12 -0.32 4.25 45.58 0.19 -0.13 16 13 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 14 C -0.14 0.49 7.44 31.18 0.23 0.72 16 15 C -0.12 0.50 3.86 -10.27 -0.04 0.46 16 16 H 0.08 0.19 7.96 -2.39 -0.02 0.17 16 17 C 0.14 -0.86 6.35 86.38 0.55 -0.31 16 18 N -0.37 -0.52 3.68 -348.06 -1.28 -1.80 16 19 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 20 C -0.29 -0.51 10.80 21.99 0.24 -0.27 16 21 C 0.03 0.14 12.03 85.24 1.02 1.16 16 22 N -0.34 -2.68 12.27 -57.03 -0.70 -3.38 16 23 C -0.12 1.00 7.39 31.12 0.23 1.23 16 24 C -0.08 0.44 9.51 22.57 0.21 0.66 16 25 C 0.10 -0.30 7.23 22.33 0.16 -0.14 16 26 F -0.13 0.00 16.73 44.97 0.75 0.75 16 27 H 0.40 -4.73 8.70 -74.06 -0.64 -5.37 16 28 H 0.11 -0.26 7.89 -2.39 -0.02 -0.28 16 29 H -0.28 0.02 7.11 99.48 0.71 0.73 16 30 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 31 H 0.18 -1.66 5.10 -2.91 -0.01 -1.67 16 32 H 0.42 -5.13 6.76 -92.71 -0.63 -5.76 16 33 H 0.11 -0.88 7.90 -2.39 -0.02 -0.90 16 34 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.13 -1.74 7.78 -2.39 -0.02 -1.76 16 36 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.21 -1.96 8.06 -2.91 -0.02 -1.99 16 38 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 40 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.12 -1.84 8.08 -2.39 -0.02 -1.86 16 42 H 0.18 -2.42 6.41 -2.91 -0.02 -2.44 16 Total: 0.00 -29.32 365.67 1.81 -27.51 By element: Atomic # 1 Polarization: -22.09 SS G_CDS: -0.13 Total: -22.23 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.74 Total: 8.56 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -4.33 Total: -4.42 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -1.98 Total: -7.90 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 1.45 Total: 0.51 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.05 Total: -2.03 kcal Total: -29.32 1.81 -27.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.029 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds