Wall clock time and date at job start Sun Mar 7 2021 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35658 * 117.00064 * 2 1 4 4 C 1.40139 * 120.15160 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.18795 * 0.02562 * 4 3 2 6 6 O 1.21585 * 120.00363 * 359.71977 * 5 4 3 7 7 N 1.34781 * 119.99824 * 179.71797 * 5 4 3 8 8 C 1.46500 * 119.99985 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.85221 * 334.67013 * 8 7 5 10 10 C 1.53785 * 113.68813 * 105.94035 * 8 7 5 11 11 C 1.53779 * 87.08093 * 139.99098 * 10 8 7 12 12 H 1.09003 * 113.61186 * 89.11185 * 11 10 8 13 13 C 1.52998 * 113.68908 * 220.00507 * 11 10 8 14 14 N 1.46496 * 109.47161 * 272.53636 * 13 11 10 15 15 C 1.34945 * 126.03712 * 125.00245 * 14 13 11 16 16 C 1.35316 * 107.74556 * 179.97438 * 15 14 13 17 17 C 1.39870 * 107.92179 * 359.97438 * 16 15 14 18 18 N 1.30835 * 108.19743 * 359.74111 * 17 16 15 19 19 C 1.53781 * 113.61339 * 203.47543 * 8 7 5 20 20 C 1.39705 * 119.61771 * 179.72632 * 4 3 2 21 21 C 1.37789 * 119.90656 * 0.25554 * 20 4 3 22 22 C 1.50698 * 119.84928 * 180.02562 * 21 20 4 23 23 O 1.42905 * 109.47367 * 64.99895 * 22 21 20 24 24 Si 1.86298 * 109.47319 * 184.99741 * 22 21 20 25 25 C 1.38547 * 120.30210 * 359.97438 * 21 20 4 26 26 C 1.38054 * 120.39086 * 0.02562 * 25 21 20 27 27 H 1.09001 * 109.47042 * 59.99988 * 1 2 3 28 28 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47252 * 299.99745 * 1 2 3 30 30 H 0.96998 * 119.99866 * 0.02562 * 7 5 4 31 31 H 1.09003 * 113.60734 * 254.54218 * 10 8 7 32 32 H 1.08996 * 113.61146 * 25.43716 * 10 8 7 33 33 H 1.09002 * 109.47010 * 32.54063 * 13 11 10 34 34 H 1.09006 * 109.47124 * 152.53503 * 13 11 10 35 35 H 1.07997 * 126.12889 * 359.97438 * 15 14 13 36 36 H 1.08004 * 126.03644 * 179.97438 * 16 15 14 37 37 H 1.07999 * 125.89680 * 179.97438 * 17 16 15 38 38 H 1.09005 * 113.61302 * 334.48230 * 19 8 7 39 39 H 1.08996 * 113.61527 * 105.30394 * 19 8 7 40 40 H 1.07997 * 120.04251 * 180.23636 * 20 4 3 41 41 H 1.08999 * 109.46978 * 304.99836 * 22 21 20 42 42 H 0.96701 * 113.99763 * 59.99344 * 23 22 21 43 43 H 1.48504 * 109.99808 * 58.68106 * 24 22 21 44 44 H 1.48496 * 110.00145 * 180.02562 * 24 22 21 45 45 H 1.07998 * 119.80635 * 180.02562 * 25 21 20 46 46 H 1.08002 * 119.95962 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4442 1.2857 0.0005 5 6 4.2550 0.0532 0.0005 6 8 3.7095 -1.0334 0.0052 7 7 5.6005 0.1317 -0.0047 8 6 6.4057 -1.0922 -0.0041 9 1 5.8815 -1.9435 0.4301 10 6 7.0634 -1.3997 -1.3598 11 6 8.3093 -1.8314 -0.5686 12 1 8.3055 -2.8849 -0.2887 13 6 9.6273 -1.3916 -1.2093 14 7 10.0626 -2.4038 -2.1747 15 6 10.3507 -2.1885 -3.4753 16 6 10.7128 -3.3735 -4.0192 17 6 10.6441 -4.3462 -3.0165 18 7 10.2602 -3.7650 -1.9090 19 6 7.8260 -0.8948 0.5514 20 6 4.0668 2.5364 -0.0053 21 6 3.3038 3.6837 -0.0061 22 6 3.9768 5.0320 -0.0130 23 8 4.6945 5.2001 -1.2373 24 14 2.6891 6.3696 0.1405 25 6 1.9206 3.6034 -0.0018 26 6 1.2925 2.3740 0.0039 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.0357 0.9986 -0.0081 31 1 6.5856 -2.2160 -1.9016 32 1 7.2230 -0.5163 -1.9780 33 1 9.4828 -0.4400 -1.7209 34 1 10.3867 -1.2767 -0.4359 35 1 10.3012 -1.2403 -3.9900 36 1 11.0034 -3.5389 -5.0462 37 1 10.8726 -5.3951 -3.1351 38 1 8.1943 0.1267 0.4556 39 1 7.9637 -1.3022 1.5529 40 1 5.1447 2.6037 -0.0087 41 1 4.6695 5.0966 0.8261 42 1 4.1396 5.1540 -2.0279 43 1 1.9145 6.1875 1.3943 44 1 3.3400 7.7043 0.1343 45 1 1.3304 4.5078 -0.0030 46 1 0.2138 2.3195 0.0068 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:55 Heat of formation + Delta-G solvation = 39.108360 kcal Electronic energy + Delta-G solvation = -29353.069274 eV Core-core repulsion = 25212.822654 eV Total energy + Delta-G solvation = -4140.246619 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08668 -41.80062 -40.73280 -39.27422 -39.16426 -37.09239 -35.19847 -33.71966 -32.41060 -31.80834 -30.97040 -28.71570 -28.35415 -26.78254 -26.14490 -25.61636 -23.92427 -22.52598 -22.02957 -21.61010 -21.49028 -20.49819 -19.44083 -18.38814 -18.24619 -18.11612 -17.31519 -16.93055 -16.87145 -16.34343 -16.24369 -16.13308 -15.83719 -15.79307 -15.67574 -15.21727 -14.73131 -14.54838 -14.50543 -14.46306 -14.19627 -13.67508 -13.66195 -13.51814 -13.43770 -13.33965 -13.09209 -12.85487 -12.44569 -12.31747 -12.13896 -12.02899 -11.89974 -11.79282 -11.56147 -11.47654 -11.00571 -10.38061 -10.33763 -10.28172 -10.02673 -9.47394 -9.29973 -4.97098 -0.27564 0.21085 1.01113 1.34860 1.66237 1.66898 1.75201 1.95991 2.00971 2.08966 2.26215 2.66624 3.35736 3.46945 3.47907 3.53132 3.57699 3.67652 3.75481 3.77321 3.90614 3.98127 4.09182 4.13747 4.19446 4.28557 4.32648 4.34325 4.39695 4.49789 4.56580 4.59702 4.64674 4.66727 4.71254 4.75584 4.79974 4.90335 4.92567 4.95060 5.00429 5.10096 5.16197 5.20984 5.27270 5.52315 5.56439 5.75714 6.19813 6.29076 6.50879 6.78820 6.82136 7.19963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.169 3.831 4 C -0.198 4.198 5 C 0.555 3.445 6 O -0.568 6.568 7 N -0.704 5.704 8 C 0.119 3.881 9 H 0.085 0.915 10 C -0.139 4.139 11 C -0.113 4.113 12 H 0.081 0.919 13 C 0.141 3.859 14 N -0.375 5.375 15 C 0.054 3.946 16 C -0.294 4.294 17 C 0.028 3.972 18 N -0.339 5.339 19 C -0.117 4.117 20 C -0.015 4.015 21 C -0.168 4.168 22 C -0.061 4.061 23 O -0.553 6.553 24 Si 0.767 3.233 25 C -0.041 4.041 26 C -0.213 4.213 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.414 0.586 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.207 0.793 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.114 0.886 42 H 0.396 0.604 43 H -0.286 1.286 44 H -0.302 1.302 45 H 0.159 0.841 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 8.079 -2.784 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.121 3.879 4 C -0.202 4.202 5 C 0.344 3.656 6 O -0.448 6.448 7 N -0.356 5.356 8 C 0.014 3.986 9 H 0.103 0.897 10 C -0.178 4.178 11 C -0.133 4.133 12 H 0.099 0.901 13 C 0.020 3.980 14 N -0.158 5.158 15 C -0.092 4.092 16 C -0.323 4.323 17 C -0.157 4.157 18 N -0.162 5.162 19 C -0.155 4.155 20 C -0.034 4.034 21 C -0.168 4.168 22 C -0.172 4.172 23 O -0.361 6.361 24 Si 0.674 3.326 25 C -0.058 4.058 26 C -0.231 4.231 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.224 0.776 36 H 0.178 0.822 37 H 0.212 0.788 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.131 0.869 42 H 0.246 0.754 43 H -0.213 1.213 44 H -0.230 1.230 45 H 0.176 0.824 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.042 7.763 -0.561 8.046 hybrid contribution 0.423 -0.441 -0.489 0.782 sum -1.619 7.322 -1.050 7.571 Atomic orbital electron populations 1.23443 0.76537 1.05405 1.02906 1.86341 1.23213 1.26541 1.86579 1.19460 0.91438 0.85553 0.91496 1.19420 0.91121 0.94005 1.15608 1.18400 0.82901 0.88627 0.75651 1.90813 1.72605 1.30553 1.50830 1.45747 1.04931 1.10092 1.74852 1.22385 0.90718 0.87912 0.97600 0.89660 1.23530 0.95769 1.01667 0.96824 1.22511 0.93060 1.00333 0.97414 0.90107 1.22011 0.95731 0.88676 0.91540 1.48959 1.51461 1.06579 1.08770 1.23188 0.99205 1.01808 0.85046 1.21871 1.15804 0.92405 1.02245 1.24316 0.99081 1.01612 0.90710 1.77265 1.24275 0.89741 1.24898 1.23315 0.92143 1.01571 0.98514 1.21115 1.00813 0.89028 0.92396 1.20259 0.93827 0.96047 1.06696 1.25005 1.03267 0.98557 0.90332 1.86473 1.38868 1.95049 1.15700 0.93883 0.79083 0.74151 0.85528 1.21283 0.93742 0.97784 0.93023 1.21480 1.01786 0.90911 1.08921 0.90577 0.87626 0.90947 0.74740 0.93647 0.87573 0.85192 0.88817 0.77632 0.82171 0.78836 0.86042 0.89913 0.82947 0.86875 0.75429 1.21303 1.23016 0.82381 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.80 8.57 -68.82 -0.59 -3.39 16 3 C 0.17 0.87 6.70 22.85 0.15 1.02 16 4 C -0.20 -0.92 5.89 -20.01 -0.12 -1.04 16 5 C 0.56 4.92 7.76 86.69 0.67 5.59 16 6 O -0.57 -10.55 14.78 16.94 0.25 -10.30 16 7 N -0.70 -0.54 5.31 -443.19 -2.36 -2.90 16 8 C 0.12 0.18 4.22 45.52 0.19 0.37 16 9 H 0.09 0.70 7.50 -2.39 -0.02 0.69 16 10 C -0.14 -0.03 7.44 31.12 0.23 0.20 16 11 C -0.11 0.16 3.86 -10.27 -0.04 0.12 16 12 H 0.08 0.39 7.97 -2.39 -0.02 0.37 16 13 C 0.14 -0.53 6.35 86.38 0.55 0.02 16 14 N -0.38 -1.21 3.68 -348.07 -1.28 -2.49 16 15 C 0.05 0.02 11.45 83.54 0.96 0.98 16 16 C -0.29 -0.87 10.80 21.99 0.24 -0.63 16 17 C 0.03 0.17 12.03 85.24 1.03 1.20 16 18 N -0.34 -3.20 12.28 -57.03 -0.70 -3.90 16 19 C -0.12 0.59 7.39 31.12 0.23 0.82 16 20 C -0.01 0.03 9.16 22.52 0.21 0.24 16 21 C -0.17 0.68 5.35 -19.90 -0.11 0.57 16 22 C -0.06 0.34 2.79 71.24 0.20 0.54 16 23 O -0.55 2.89 12.83 -148.98 -1.91 0.97 16 24 Si 0.77 -4.59 29.78 68.60 2.04 -2.55 16 25 C -0.04 0.20 8.65 22.30 0.19 0.40 16 26 C -0.21 0.42 9.03 22.34 0.20 0.62 16 27 H 0.08 -0.38 7.67 -2.39 -0.02 -0.40 16 28 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 -0.32 7.65 -2.39 -0.02 -0.34 16 30 H 0.41 -2.56 6.74 -92.71 -0.63 -3.19 16 31 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 -0.41 7.90 -2.39 -0.02 -0.43 16 33 H 0.13 -1.37 7.78 -2.39 -0.02 -1.39 16 34 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 35 H 0.21 -1.62 8.06 -2.91 -0.02 -1.64 16 36 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 38 H 0.12 -1.33 8.07 -2.38 -0.02 -1.35 16 39 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.15 -1.03 6.40 -2.91 -0.02 -1.05 16 41 H 0.11 -0.59 7.96 -2.39 -0.02 -0.61 16 42 H 0.40 -4.98 8.70 -74.06 -0.64 -5.62 16 43 H -0.29 0.28 7.11 99.48 0.71 0.98 16 44 H -0.30 -0.71 7.11 99.48 0.71 0.00 16 45 H 0.16 -1.67 4.88 -2.91 -0.01 -1.68 16 46 H 0.16 -1.13 6.30 -2.91 -0.02 -1.15 16 Total: 0.00 -31.15 382.39 1.15 -30.01 By element: Atomic # 1 Polarization: -17.36 SS G_CDS: -0.20 Total: -17.56 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.90 Total: 12.12 kcal Atomic # 7 Polarization: -4.95 SS G_CDS: -4.34 Total: -9.29 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -2.25 Total: -12.72 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.04 Total: -2.55 kcal Total: -31.15 1.15 -30.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.114 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds