Wall clock time and date at job start Sun Mar 7 2021 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38638 * 119.93654 * 194.99772 * 4 2 1 6 6 F 1.35101 * 119.88342 * 359.97438 * 5 4 2 7 7 C 1.38673 * 120.23708 * 179.97438 * 5 4 2 8 8 C 1.37817 * 120.12322 * 359.97438 * 7 5 4 9 9 C 1.39676 * 119.87604 * 359.97438 * 8 7 5 10 10 C 1.47726 * 120.11875 * 179.97438 * 9 8 7 11 11 O 1.21569 * 119.99895 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99723 * 359.97438 * 10 9 8 13 13 C 1.46502 * 119.99849 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84453 * 25.33882 * 13 12 10 15 15 C 1.53775 * 113.61435 * 156.52982 * 13 12 10 16 16 C 1.53779 * 87.08037 * 139.98615 * 15 13 12 17 17 H 1.08994 * 113.61838 * 89.20195 * 16 15 13 18 18 C 1.53005 * 113.61443 * 220.02042 * 16 15 13 19 19 N 1.46496 * 109.47119 * 184.99636 * 18 16 15 20 20 C 1.34950 * 126.03405 * 124.71481 * 19 18 16 21 21 C 1.35326 * 107.74676 * 179.84153 * 20 19 18 22 22 C 1.39872 * 107.91484 * 0.42341 * 21 20 19 23 23 N 1.30834 * 108.20380 * 359.73932 * 22 21 20 24 24 C 1.53780 * 113.61784 * 254.14126 * 13 12 10 25 25 C 1.37852 * 119.94188 * 14.71814 * 4 2 1 26 26 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 27 27 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 28 28 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 29 29 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 30 30 H 1.08006 * 119.94187 * 179.97438 * 7 5 4 31 31 H 1.08000 * 120.06502 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99883 * 0.02562 * 12 10 9 33 33 H 1.08998 * 113.61907 * 254.53671 * 15 13 12 34 34 H 1.09002 * 113.61100 * 25.35387 * 15 13 12 35 35 H 1.08999 * 109.47338 * 305.00077 * 18 16 15 36 36 H 1.09004 * 109.46915 * 65.00337 * 18 16 15 37 37 H 1.08006 * 126.12806 * 0.02562 * 20 19 18 38 38 H 1.07994 * 126.04217 * 180.16142 * 21 20 19 39 39 H 1.07995 * 125.89520 * 179.75412 * 22 21 20 40 40 H 1.08996 * 113.61378 * 334.56958 * 24 13 12 41 41 H 1.09007 * 113.61282 * 105.46857 * 24 13 12 42 42 H 1.07991 * 120.06378 * 0.02799 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 3.2561 -0.5741 1.6157 6 9 4.0934 0.1955 0.8864 7 6 3.7248 -1.2247 2.7471 8 6 2.8749 -2.0106 3.4950 9 6 1.5390 -2.1507 3.1119 10 6 0.6235 -2.9922 3.9093 11 8 -0.5389 -3.1122 3.5741 12 7 1.0769 -3.6268 5.0084 13 6 0.1689 -4.4609 5.7996 14 1 -0.6668 -4.8477 5.2163 15 6 0.8877 -5.5348 6.6331 16 6 -0.1112 -5.2177 7.7585 17 1 -1.0236 -5.8122 7.7129 18 6 0.5199 -5.2042 9.1523 19 7 -0.5260 -5.0128 10.1601 20 6 -0.7714 -5.8208 11.2128 21 6 -1.8115 -5.2963 11.9016 22 6 -2.2217 -4.1332 11.2418 23 7 -1.4519 -3.9624 10.1979 24 6 -0.2543 -3.8190 7.1314 25 6 1.0714 -1.4904 1.9738 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5137 -0.8901 28 1 1.5616 2.4678 1.2086 29 1 3.5346 1.7703 -0.0322 30 1 4.7578 -1.1154 3.0427 31 1 3.2410 -2.5172 4.3757 32 1 2.0043 -3.5307 5.2760 33 1 0.7853 -6.5420 6.2294 34 1 1.9188 -5.2798 6.8779 35 1 1.0273 -6.1522 9.3307 36 1 1.2403 -4.3886 9.2170 37 1 -0.2321 -6.7226 11.4627 38 1 -2.2502 -5.7060 12.7993 39 1 -3.0336 -3.4876 11.5425 40 1 0.4634 -3.0934 7.5139 41 1 -1.2775 -3.4431 7.1293 42 1 0.0387 -1.5927 1.6750 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:00 Heat of formation + Delta-G solvation = 36.674651 kcal Electronic energy + Delta-G solvation = -27131.913567 eV Core-core repulsion = 22996.327249 eV Total energy + Delta-G solvation = -4135.586317 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.60280 -42.07414 -41.60667 -40.31867 -39.20426 -37.69971 -35.35091 -33.79285 -32.84027 -32.00597 -30.94443 -28.58997 -27.12291 -26.75134 -25.61163 -23.68545 -23.29945 -21.92479 -21.70206 -21.50906 -20.67772 -19.29014 -18.91060 -18.43209 -18.20934 -17.67842 -17.40734 -16.89615 -16.56968 -16.26724 -16.18411 -15.85977 -15.67467 -15.38535 -15.22521 -14.97246 -14.85872 -14.83197 -14.36966 -14.03384 -13.80648 -13.57887 -13.50135 -13.44862 -13.33001 -12.96239 -12.84607 -12.27417 -12.26150 -11.88038 -11.76940 -11.63022 -11.40475 -11.19473 -10.98163 -10.35434 -10.30512 -10.08871 -9.73974 -9.48933 -5.00012 -0.65553 -0.08480 1.00996 1.18051 1.50529 1.60579 1.67842 1.91621 1.95399 1.96192 2.46018 2.79535 3.02430 3.31185 3.35409 3.42225 3.47852 3.65685 3.68353 3.73566 3.91486 3.97473 4.08688 4.08900 4.19974 4.27985 4.29686 4.37377 4.47685 4.67177 4.67792 4.69702 4.75682 4.77023 4.79812 4.91721 4.93509 4.96470 4.97172 5.02876 5.13795 5.16405 5.44263 5.50615 5.75221 6.20253 6.36098 6.78287 6.79333 7.02703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.078 4.078 3 Si 0.767 3.233 4 C -0.135 4.135 5 C 0.090 3.910 6 F -0.124 7.124 7 C -0.144 4.144 8 C -0.046 4.046 9 C -0.154 4.154 10 C 0.558 3.442 11 O -0.579 6.579 12 N -0.696 5.696 13 C 0.114 3.886 14 H 0.090 0.910 15 C -0.111 4.111 16 C -0.111 4.111 17 H 0.082 0.918 18 C 0.139 3.861 19 N -0.377 5.377 20 C 0.054 3.946 21 C -0.294 4.294 22 C 0.024 3.976 23 N -0.332 5.332 24 C -0.136 4.136 25 C -0.027 4.027 26 H 0.408 0.592 27 H 0.103 0.897 28 H -0.315 1.315 29 H -0.256 1.256 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.418 0.582 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.208 0.792 38 H 0.160 0.840 39 H 0.192 0.808 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -3.639 0.879 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.187 4.187 3 Si 0.671 3.329 4 C -0.136 4.136 5 C 0.071 3.929 6 F -0.102 7.102 7 C -0.163 4.163 8 C -0.064 4.064 9 C -0.158 4.158 10 C 0.347 3.653 11 O -0.459 6.459 12 N -0.347 5.347 13 C 0.009 3.991 14 H 0.108 0.892 15 C -0.150 4.150 16 C -0.130 4.130 17 H 0.101 0.899 18 C 0.019 3.981 19 N -0.160 5.160 20 C -0.093 4.093 21 C -0.323 4.323 22 C -0.161 4.161 23 N -0.155 5.155 24 C -0.174 4.174 25 C -0.046 4.046 26 H 0.260 0.740 27 H 0.121 0.879 28 H -0.243 1.243 29 H -0.182 1.182 30 H 0.195 0.805 31 H 0.198 0.802 32 H 0.257 0.743 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.112 0.888 37 H 0.225 0.775 38 H 0.177 0.823 39 H 0.209 0.791 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.075 -2.728 0.462 7.596 hybrid contribution -0.349 -0.556 0.891 1.107 sum 6.725 -3.284 1.353 7.606 Atomic orbital electron populations 1.86381 1.16753 1.82489 1.51686 1.24741 0.86464 1.10884 0.96630 0.94990 0.77846 0.73616 0.86409 1.19673 0.92492 1.01311 1.00127 1.18036 0.87321 0.94656 0.92929 1.91484 1.70855 1.71699 1.76187 1.21440 1.03221 0.98098 0.93505 1.21546 0.90209 0.95275 0.99353 1.20102 0.95418 1.02261 0.97973 1.18396 0.86790 0.79284 0.80862 1.90798 1.19803 1.64256 1.71089 1.45730 1.14871 1.48269 1.25879 1.22564 0.94003 0.92398 0.90140 0.89162 1.23300 0.99729 0.99119 0.92835 1.22521 0.99858 0.97422 0.93242 0.89917 1.22040 0.86585 1.05227 0.84276 1.49012 1.26497 1.18540 1.21926 1.23213 0.98882 0.98088 0.89100 1.21867 1.03620 1.00316 1.06502 1.24311 0.99799 0.98691 0.93310 1.77330 1.04815 1.10651 1.22668 1.23456 1.01436 0.97218 0.95333 1.20892 1.00248 0.91665 0.91828 0.73961 0.87908 1.24317 1.18235 0.80494 0.80162 0.74262 0.88922 0.85960 0.84894 0.88820 0.77503 0.82278 0.79141 0.88933 0.93881 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.29 11.47 -148.98 -1.71 -3.00 16 2 C -0.08 -0.15 2.96 71.23 0.21 0.06 16 3 Si 0.77 0.57 30.73 68.60 2.11 2.68 16 4 C -0.13 -0.83 5.15 -19.86 -0.10 -0.93 16 5 C 0.09 0.35 6.67 22.47 0.15 0.50 16 6 F -0.12 -0.66 12.86 44.97 0.58 -0.08 16 7 C -0.14 0.28 10.01 22.27 0.22 0.50 16 8 C -0.05 0.16 9.54 22.52 0.21 0.37 16 9 C -0.15 -0.68 5.87 -20.08 -0.12 -0.80 16 10 C 0.56 4.00 7.77 86.75 0.67 4.67 16 11 O -0.58 -9.91 15.96 -3.93 -0.06 -9.98 16 12 N -0.70 1.02 5.31 -443.02 -2.35 -1.33 16 13 C 0.11 -0.05 4.21 45.51 0.19 0.14 16 14 H 0.09 0.50 7.50 -2.39 -0.02 0.48 16 15 C -0.11 0.95 7.39 31.12 0.23 1.18 16 16 C -0.11 0.43 3.83 -10.21 -0.04 0.39 16 17 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 18 C 0.14 -0.82 6.35 86.38 0.55 -0.27 16 19 N -0.38 -0.66 3.68 -348.04 -1.28 -1.94 16 20 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 21 C -0.29 -0.62 10.80 21.99 0.24 -0.38 16 22 C 0.02 0.14 12.03 85.24 1.03 1.16 16 23 N -0.33 -2.76 12.42 -57.03 -0.71 -3.47 16 24 C -0.14 -0.13 7.45 31.18 0.23 0.10 16 25 C -0.03 -0.23 8.91 22.52 0.20 -0.03 16 26 H 0.41 -3.48 8.74 -74.05 -0.65 -4.12 16 27 H 0.10 -0.23 7.96 -2.38 -0.02 -0.25 16 28 H -0.31 -3.20 7.11 99.48 0.71 -2.50 16 29 H -0.26 -1.24 5.40 99.48 0.54 -0.71 16 30 H 0.18 -1.43 8.06 -2.91 -0.02 -1.45 16 31 H 0.18 -2.29 6.40 -2.91 -0.02 -2.31 16 32 H 0.42 -4.02 6.74 -92.71 -0.62 -4.64 16 33 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.12 -1.75 8.07 -2.39 -0.02 -1.76 16 35 H 0.13 -1.69 8.07 -2.39 -0.02 -1.71 16 36 H 0.09 -0.67 7.85 -2.39 -0.02 -0.69 16 37 H 0.21 -1.91 8.06 -2.91 -0.02 -1.94 16 38 H 0.16 -0.27 8.06 -2.91 -0.02 -0.29 16 39 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.09 -0.04 7.90 -2.39 -0.02 -0.06 16 41 H 0.04 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.14 1.72 6.71 -2.92 -0.02 1.70 16 Total: 0.00 -31.20 357.92 1.08 -30.12 By element: Atomic # 1 Polarization: -20.25 SS G_CDS: -0.33 Total: -20.58 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.83 Total: 7.58 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -4.34 Total: -6.74 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.77 Total: -12.98 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.58 Total: -0.08 kcal Atomic # 14 Polarization: 0.57 SS G_CDS: 2.11 Total: 2.68 kcal Total: -31.20 1.08 -30.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.799 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds