Wall clock time and date at job start Sun Mar 7 2021 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46995 * 2 1 4 4 C 1.50701 * 109.47222 * 240.00402 * 2 1 3 5 5 C 1.35088 * 126.07958 * 104.01694 * 4 2 1 6 6 N 1.35035 * 107.98057 * 180.27654 * 5 4 2 7 7 C 1.46493 * 125.93112 * 179.74660 * 6 5 4 8 8 C 1.50702 * 109.47270 * 124.97707 * 7 6 5 9 9 O 1.21288 * 119.99784 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99720 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.84769 * 23.80264 * 11 10 8 13 13 C 1.53782 * 113.61137 * 154.99724 * 11 10 8 14 14 C 1.53776 * 87.08141 * 139.98080 * 13 11 10 15 15 H 1.09003 * 113.61324 * 89.19525 * 14 13 11 16 16 C 1.52995 * 113.61677 * 220.02062 * 14 13 11 17 17 N 1.46502 * 109.47276 * 184.99838 * 16 14 13 18 18 C 1.34957 * 126.03415 * 124.71282 * 17 16 14 19 19 C 1.35324 * 107.73963 * 179.83914 * 18 17 16 20 20 C 1.39867 * 107.92098 * 0.42826 * 19 18 17 21 21 N 1.30838 * 108.20334 * 359.72960 * 20 19 18 22 22 C 1.53776 * 113.61468 * 252.49153 * 11 10 8 23 23 N 1.40075 * 108.13633 * 359.74622 * 6 5 4 24 24 C 1.31619 * 108.11079 * 359.97438 * 23 6 5 25 25 C 1.48422 * 126.03788 * 179.97438 * 24 23 6 26 26 C 1.39326 * 120.11529 * 43.71001 * 25 24 23 27 27 C 1.38019 * 119.87535 * 179.97438 * 26 25 24 28 28 C 1.38320 * 120.12413 * 359.97438 * 27 26 25 29 29 C 1.38322 * 120.23762 * 0.02562 * 28 27 26 30 30 C 1.38026 * 120.12185 * 359.97438 * 29 28 27 31 31 H 0.96697 * 114.00143 * 59.99834 * 1 2 3 32 32 H 1.08998 * 109.47348 * 120.00110 * 2 1 3 33 33 H 1.48491 * 110.00107 * 298.68057 * 3 2 1 34 34 H 1.48503 * 110.00036 * 60.00223 * 3 2 1 35 35 H 1.08001 * 126.00543 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47200 * 244.97045 * 7 6 5 37 37 H 1.08994 * 109.47375 * 4.97731 * 7 6 5 38 38 H 0.96997 * 120.00503 * 359.97438 * 10 8 7 39 39 H 1.08998 * 113.61547 * 254.52987 * 13 11 10 40 40 H 1.08997 * 113.61492 * 25.43284 * 13 11 10 41 41 H 1.09004 * 109.46964 * 304.99703 * 16 14 13 42 42 H 1.08999 * 109.47691 * 64.99683 * 16 14 13 43 43 H 1.07998 * 126.12900 * 359.97438 * 18 17 16 44 44 H 1.07999 * 126.03807 * 180.16089 * 19 18 17 45 45 H 1.07997 * 125.89782 * 179.76439 * 20 19 18 46 46 H 1.09003 * 113.61584 * 334.57522 * 22 11 10 47 47 H 1.09001 * 113.61185 * 105.46833 * 22 11 10 48 48 H 1.08003 * 120.06337 * 359.97438 * 26 25 24 49 49 H 1.08004 * 119.93922 * 180.25786 * 27 26 25 50 50 H 1.08000 * 119.88395 * 179.97438 * 28 27 26 51 51 H 1.07997 * 119.94033 * 179.97438 * 29 28 27 52 52 H 1.07990 * 120.06116 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.4459 -0.1238 -2.3333 6 7 2.7723 -1.0979 -3.2097 7 6 3.3572 -0.8986 -4.5379 8 6 4.6325 -1.6937 -4.6497 9 8 5.0154 -2.3607 -3.7118 10 7 5.3482 -1.6626 -5.7913 11 6 6.5883 -2.4351 -5.8997 12 1 6.6223 -3.2797 -5.2115 13 6 6.9603 -2.8033 -7.3457 14 6 8.4188 -2.4997 -6.9646 15 1 8.9551 -3.3620 -6.5685 16 6 9.1980 -1.7661 -8.0579 17 7 10.5988 -1.6295 -7.6513 18 6 11.6736 -2.0446 -8.3541 19 6 12.7794 -1.7312 -7.6398 20 6 12.3659 -1.1120 -6.4558 21 7 11.0589 -1.0504 -6.4617 22 6 7.8581 -1.5681 -5.8771 23 7 2.4545 -2.3320 -2.6282 24 6 1.9510 -2.1039 -1.4337 25 6 1.4801 -3.1331 -0.4735 26 6 2.2330 -4.2857 -0.2591 27 6 1.7907 -5.2392 0.6353 28 6 0.6028 -5.0520 1.3187 29 6 -0.1485 -3.9096 1.1097 30 6 0.2843 -2.9495 0.2175 31 1 -0.3933 0.4417 -0.7650 32 1 1.7924 -0.5138 0.8899 33 1 1.5879 2.4586 -1.2242 34 1 1.5615 2.4679 1.2085 35 1 2.5702 0.9377 -2.4885 36 1 2.6526 -1.2335 -5.2992 37 1 3.5746 0.1593 -4.6842 38 1 5.0422 -1.1289 -6.5412 39 1 6.7816 -3.8506 -7.5894 40 1 6.5518 -2.1191 -8.0893 41 1 9.1430 -2.3342 -8.9866 42 1 8.7660 -0.7771 -8.2108 43 1 11.6546 -2.5366 -9.3153 44 1 13.8007 -1.9286 -7.9305 45 1 13.0135 -0.7472 -5.6723 46 1 7.6951 -0.5460 -6.2193 47 1 8.4042 -1.6180 -4.9351 48 1 3.1609 -4.4327 -0.7918 49 1 2.3756 -6.1311 0.8054 50 1 0.2602 -5.8009 2.0174 51 1 -1.0755 -3.7686 1.6455 52 1 -0.3032 -2.0582 0.0547 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:04 Heat of formation + Delta-G solvation = 157.367221 kcal Electronic energy + Delta-G solvation = -35186.311439 eV Core-core repulsion = 30543.269620 eV Total energy + Delta-G solvation = -4643.041820 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.179 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.50858 -42.04138 -41.11588 -39.86751 -39.41963 -37.83658 -35.20294 -34.78181 -33.54540 -32.29665 -31.88253 -31.45335 -30.94482 -29.17822 -28.14245 -26.72497 -26.00160 -24.66585 -23.66090 -23.46696 -21.99920 -21.89458 -21.55913 -21.46361 -21.05018 -20.60613 -18.80761 -18.35412 -18.23759 -17.75770 -17.41977 -16.85085 -16.63500 -16.52952 -16.24204 -16.17606 -15.86841 -15.65364 -15.49318 -15.45515 -15.04561 -14.88883 -14.82691 -14.58053 -14.37101 -14.06323 -14.02688 -13.80672 -13.61161 -13.56567 -13.48831 -13.42117 -13.33296 -12.92931 -12.55869 -12.37204 -12.24908 -12.12884 -11.86872 -11.81723 -11.64866 -11.61937 -11.37780 -11.18889 -10.63136 -10.41323 -10.32871 -10.10113 -9.89159 -9.75969 -9.48061 -9.34394 -4.83297 0.09130 0.45837 0.80934 1.01729 1.27896 1.41495 1.46262 1.60829 1.65829 1.69327 1.96425 2.01870 2.11364 2.86669 3.32669 3.34969 3.44237 3.51905 3.56131 3.67767 3.70089 3.75171 3.93382 3.98755 4.02032 4.09369 4.10844 4.11356 4.16331 4.22053 4.30231 4.31256 4.38846 4.45185 4.52411 4.58629 4.68985 4.71245 4.77252 4.78085 4.80916 4.86733 4.92565 4.98307 4.98691 5.04196 5.14354 5.16522 5.18516 5.30233 5.52056 5.56588 5.59484 5.62214 5.76385 5.90290 6.03820 6.20697 6.47057 6.58358 6.63905 6.80172 7.17213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.045 4.045 3 Si 0.767 3.233 4 C -0.261 4.261 5 C 0.074 3.926 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.495 3.505 9 O -0.567 6.567 10 N -0.700 5.700 11 C 0.118 3.882 12 H 0.080 0.920 13 C -0.114 4.114 14 C -0.114 4.114 15 H 0.077 0.923 16 C 0.140 3.860 17 N -0.377 5.377 18 C 0.052 3.948 19 C -0.294 4.294 20 C 0.025 3.975 21 N -0.330 5.330 22 C -0.130 4.130 23 N -0.294 5.294 24 C 0.110 3.890 25 C -0.035 4.035 26 C -0.111 4.111 27 C -0.130 4.130 28 C -0.115 4.115 29 C -0.128 4.128 30 C -0.101 4.101 31 H 0.384 0.616 32 H 0.099 0.901 33 H -0.252 1.252 34 H -0.304 1.304 35 H 0.218 0.782 36 H 0.142 0.858 37 H 0.179 0.821 38 H 0.423 0.577 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.207 0.793 44 H 0.159 0.841 45 H 0.192 0.808 46 H 0.098 0.902 47 H 0.040 0.960 48 H 0.108 0.892 49 H 0.139 0.861 50 H 0.147 0.853 51 H 0.144 0.856 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 4.409 -9.799 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.154 4.154 3 Si 0.669 3.331 4 C -0.272 4.272 5 C -0.072 4.072 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.280 3.720 9 O -0.444 6.444 10 N -0.353 5.353 11 C 0.013 3.987 12 H 0.098 0.902 13 C -0.152 4.152 14 C -0.133 4.133 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.159 5.159 18 C -0.094 4.094 19 C -0.323 4.323 20 C -0.161 4.161 21 N -0.152 5.152 22 C -0.169 4.169 23 N -0.115 5.115 24 C -0.056 4.056 25 C -0.037 4.037 26 C -0.130 4.130 27 C -0.148 4.148 28 C -0.133 4.133 29 C -0.146 4.146 30 C -0.120 4.120 31 H 0.234 0.766 32 H 0.117 0.883 33 H -0.177 1.177 34 H -0.232 1.232 35 H 0.234 0.766 36 H 0.159 0.841 37 H 0.196 0.804 38 H 0.261 0.739 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.115 0.885 43 H 0.223 0.777 44 H 0.177 0.823 45 H 0.209 0.791 46 H 0.117 0.883 47 H 0.059 0.941 48 H 0.126 0.874 49 H 0.157 0.843 50 H 0.164 0.836 51 H 0.162 0.838 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.067 3.974 -9.071 9.904 hybrid contribution -0.130 -0.103 -0.242 0.294 sum -0.063 3.871 -9.314 10.086 Atomic orbital electron populations 1.86517 1.18640 1.80036 1.50053 1.24496 0.83104 1.11688 0.96119 0.94010 0.90368 0.70818 0.77914 1.20559 1.14530 0.92196 0.99941 1.22844 0.98398 0.96768 0.89156 1.48141 1.47914 1.03518 1.14515 1.22005 0.92979 1.04912 0.81503 1.21141 0.85888 0.81977 0.82971 1.90821 1.70961 1.42956 1.39697 1.45721 1.24138 1.49561 1.15909 1.22386 0.82786 0.94689 0.98872 0.90203 1.23305 0.92742 1.03990 0.95164 1.22492 0.95700 0.98686 0.96464 0.90468 1.22030 0.75142 1.02665 0.98207 1.49010 1.07336 1.45186 1.14412 1.23201 0.86566 0.99836 0.99835 1.21864 1.00642 1.12307 0.97506 1.24311 0.92490 0.99671 0.99591 1.77316 1.13113 1.20845 1.03960 1.23388 0.95457 0.99342 0.98675 1.77711 1.19968 1.04068 1.09787 1.20857 0.98391 0.93627 0.92682 1.18002 0.96032 0.93081 0.96544 1.21259 0.99523 0.93723 0.98528 1.21325 0.97394 0.99408 0.96656 1.21578 0.94399 0.98059 0.99282 1.21422 1.00857 0.93958 0.98395 1.21687 0.94859 1.00137 0.95273 0.76612 0.88299 1.17734 1.23165 0.76552 0.84071 0.80417 0.73856 0.89750 0.85796 0.85227 0.88505 0.77653 0.82347 0.79068 0.88345 0.94109 0.87431 0.84277 0.83552 0.83831 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.62 10.42 -148.98 -1.55 -3.17 16 2 C -0.04 -0.11 2.17 71.24 0.15 0.05 16 3 Si 0.77 -1.84 30.84 68.60 2.12 0.28 16 4 C -0.26 -1.28 5.34 -19.95 -0.11 -1.39 16 5 C 0.07 -0.02 9.96 83.47 0.83 0.81 16 6 N -0.36 -1.23 3.40 -351.93 -1.20 -2.43 16 7 C 0.11 -0.68 6.99 85.63 0.60 -0.08 16 8 C 0.49 0.63 7.86 87.66 0.69 1.32 16 9 O -0.57 -8.16 15.30 -3.05 -0.05 -8.20 16 10 N -0.70 4.13 5.35 -440.02 -2.36 1.77 16 11 C 0.12 -0.25 4.24 45.51 0.19 -0.06 16 12 H 0.08 0.46 7.46 -2.39 -0.02 0.44 16 13 C -0.11 1.03 7.39 31.12 0.23 1.26 16 14 C -0.11 0.51 3.83 -10.27 -0.04 0.47 16 15 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 16 C 0.14 -0.94 6.35 86.38 0.55 -0.39 16 17 N -0.38 -0.35 3.68 -348.05 -1.28 -1.63 16 18 C 0.05 -0.07 11.45 83.54 0.96 0.89 16 19 C -0.29 -0.45 10.80 21.99 0.24 -0.21 16 20 C 0.02 0.12 12.03 85.24 1.02 1.14 16 21 N -0.33 -2.35 12.42 -57.03 -0.71 -3.06 16 22 C -0.13 0.15 7.43 31.12 0.23 0.38 16 23 N -0.29 -3.79 11.67 -48.16 -0.56 -4.35 16 24 C 0.11 1.29 6.66 42.53 0.28 1.57 16 25 C -0.03 -0.43 5.74 -20.04 -0.11 -0.54 16 26 C -0.11 -1.37 9.78 22.48 0.22 -1.15 16 27 C -0.13 -1.02 10.03 22.24 0.22 -0.80 16 28 C -0.11 -0.63 10.04 22.31 0.22 -0.41 16 29 C -0.13 -0.81 10.03 22.24 0.22 -0.59 16 30 C -0.10 -0.94 9.04 22.48 0.20 -0.73 16 31 H 0.38 -1.37 8.70 -74.06 -0.64 -2.01 16 32 H 0.10 0.49 7.96 -2.39 -0.02 0.47 16 33 H -0.25 0.85 6.97 99.48 0.69 1.55 16 34 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 35 H 0.22 -2.07 6.34 -2.91 -0.02 -2.09 16 36 H 0.14 -1.54 8.14 -2.39 -0.02 -1.56 16 37 H 0.18 -2.97 8.07 -2.39 -0.02 -2.99 16 38 H 0.42 -6.23 8.73 -92.71 -0.81 -7.04 16 39 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.12 -1.87 8.08 -2.39 -0.02 -1.89 16 41 H 0.13 -1.68 8.07 -2.38 -0.02 -1.70 16 42 H 0.10 -0.83 7.84 -2.39 -0.02 -0.85 16 43 H 0.21 -1.94 8.06 -2.91 -0.02 -1.96 16 44 H 0.16 -0.33 8.06 -2.91 -0.02 -0.36 16 45 H 0.19 0.05 8.06 -2.91 -0.02 0.02 16 46 H 0.10 -0.36 7.90 -2.39 -0.02 -0.38 16 47 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 49 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 50 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 51 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 52 H 0.15 1.21 5.34 -2.92 -0.02 1.20 16 Total: 0.00 -38.48 437.78 0.76 -37.72 By element: Atomic # 1 Polarization: -18.01 SS G_CDS: -0.46 Total: -18.47 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.81 Total: 1.55 kcal Atomic # 7 Polarization: -3.59 SS G_CDS: -6.10 Total: -9.70 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.60 Total: -11.38 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.12 Total: 0.28 kcal Total: -38.48 0.76 -37.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.085 kcal (2) G-P(sol) polarization free energy of solvation -38.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds