Wall clock time and date at job start Sun Mar 7 2021 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39278 * 121.03276 * 2 1 4 4 C 1.46501 * 134.20085 * 359.95359 * 3 2 1 5 5 C 1.50704 * 126.59477 * 0.03049 * 4 3 2 6 6 O 1.42902 * 109.46787 * 284.99277 * 5 4 3 7 7 Si 1.86303 * 109.46922 * 164.99856 * 5 4 3 8 8 C 1.34175 * 106.80374 * 180.02562 * 4 3 2 9 9 N 1.36946 * 109.95297 * 0.02562 * 8 4 3 10 10 C 1.37153 * 110.11467 * 359.97438 * 9 8 4 11 11 N 1.32817 * 132.96847 * 179.97438 * 10 9 8 12 12 C 1.31312 * 121.89092 * 179.75223 * 11 10 9 13 13 C 1.39756 * 121.03022 * 179.97438 * 2 1 3 14 14 C 1.47668 * 120.45368 * 359.97438 * 13 2 1 15 15 O 1.21571 * 120.00071 * 354.20221 * 14 13 2 16 16 N 1.34775 * 119.99954 * 174.20031 * 14 13 2 17 17 C 1.46497 * 120.00202 * 180.02562 * 16 14 13 18 18 H 1.09010 * 112.90500 * 23.75242 * 17 16 14 19 19 C 1.53773 * 113.61562 * 154.99889 * 17 16 14 20 20 C 1.53777 * 87.17587 * 139.94269 * 19 17 16 21 21 H 1.08993 * 113.61700 * 89.15676 * 20 19 17 22 22 C 1.53001 * 113.61840 * 220.06653 * 20 19 17 23 23 N 1.46497 * 109.47234 * 185.00032 * 22 20 19 24 24 C 1.34942 * 126.04068 * 124.99936 * 23 22 20 25 25 C 1.35325 * 107.74587 * 179.97438 * 24 23 22 26 26 C 1.39863 * 107.91788 * 359.97438 * 25 24 23 27 27 N 1.30834 * 108.20493 * 359.74170 * 26 25 24 28 28 C 1.53772 * 113.61691 * 252.50349 * 17 16 14 29 29 H 1.09007 * 109.46824 * 263.78638 * 1 2 3 30 30 H 1.08999 * 109.47351 * 23.78668 * 1 2 3 31 31 H 1.09005 * 109.47404 * 143.79115 * 1 2 3 32 32 H 1.08995 * 109.47602 * 44.99656 * 5 4 3 33 33 H 0.96700 * 114.00160 * 180.02562 * 6 5 4 34 34 H 1.48500 * 109.99937 * 298.67837 * 7 5 4 35 35 H 1.48505 * 110.00059 * 59.99496 * 7 5 4 36 36 H 1.08004 * 125.02574 * 179.97438 * 8 4 3 37 37 H 0.96994 * 124.94448 * 180.02562 * 9 8 4 38 38 H 1.08002 * 119.31301 * 180.29276 * 12 11 10 39 39 H 0.97002 * 119.99411 * 0.02562 * 16 14 13 40 40 H 1.09003 * 113.61706 * 254.53556 * 19 17 16 41 41 H 1.09002 * 113.61399 * 25.34957 * 19 17 16 42 42 H 1.09001 * 109.46503 * 304.99622 * 22 20 19 43 43 H 1.09000 * 109.47012 * 64.99335 * 22 20 19 44 44 H 1.07995 * 126.12639 * 359.97438 * 24 23 22 45 45 H 1.08004 * 126.03592 * 179.97438 * 25 24 23 46 46 H 1.08007 * 125.89278 * 180.02562 * 26 25 24 47 47 H 1.09008 * 113.61247 * 334.56159 * 28 17 16 48 48 H 1.09000 * 113.62283 * 105.38439 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1934 0.0000 4 6 1.8516 2.6101 -0.0009 5 6 0.4526 3.1704 -0.0014 6 8 -0.1188 3.0232 -1.3029 7 14 0.5070 4.9765 0.4523 8 6 2.9948 3.3125 -0.0009 9 7 4.0669 2.4604 -0.0008 10 6 3.6348 1.1587 0.0000 11 7 4.2720 -0.0066 0.0000 12 6 3.6266 -1.1501 0.0057 13 6 2.2274 -1.1976 0.0005 14 6 1.5225 -2.4951 0.0017 15 8 0.3119 -2.5291 0.1085 16 7 2.2210 -3.6417 -0.1158 17 6 1.5217 -4.9289 -0.1152 18 1 0.4798 -4.8458 -0.4247 19 6 2.2910 -6.0483 -0.8361 20 6 1.8281 -6.9876 0.2900 21 1 0.8703 -7.4684 0.0916 22 6 2.9054 -7.9728 0.7481 23 7 2.3358 -8.8967 1.7319 24 6 2.3495 -10.2440 1.6568 25 6 1.7248 -10.7248 2.7568 26 6 1.3159 -9.6339 3.5307 27 7 1.6867 -8.5378 2.9203 28 6 1.7172 -5.7357 1.1792 29 1 -0.3633 -0.1112 1.0217 30 1 -0.3634 0.9403 -0.4145 31 1 -0.3634 -0.8292 -0.6071 32 1 -0.1550 2.6314 0.7253 33 1 -1.0209 3.3636 -1.3772 34 1 1.0700 5.1408 1.8165 35 1 1.3326 5.7226 -0.5311 36 1 3.0599 4.3906 -0.0019 37 1 4.9965 2.7372 -0.0004 38 1 4.1869 -2.0735 0.0102 39 1 3.1870 -3.6145 -0.2007 40 1 1.8794 -6.3018 -1.8131 41 1 3.3695 -5.8922 -0.8589 42 1 3.2711 -8.5362 -0.1104 43 1 3.7311 -7.4237 1.2007 44 1 2.7817 -10.8330 0.8614 45 1 1.5696 -11.7667 2.9948 46 1 0.7893 -9.6875 4.4722 47 1 2.6391 -5.4948 1.7088 48 1 0.8429 -5.7357 1.8301 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:20 Heat of formation + Delta-G solvation = 120.391890 kcal Electronic energy + Delta-G solvation = -32155.829251 eV Core-core repulsion = 27794.947820 eV Total energy + Delta-G solvation = -4360.881431 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.97562 -42.03349 -41.27185 -39.80159 -38.67083 -37.71858 -35.49768 -34.92758 -33.63220 -32.15022 -31.21035 -30.85964 -29.05096 -28.37353 -26.69424 -26.52067 -25.13797 -24.33405 -23.52115 -22.00325 -21.88455 -21.45964 -20.79112 -20.36701 -19.37838 -18.74138 -18.33282 -18.23222 -17.68037 -17.34053 -16.79902 -16.54211 -16.48800 -15.89776 -15.73033 -15.49244 -15.34112 -15.16325 -15.01475 -14.86375 -14.75357 -14.23750 -14.21505 -13.90492 -13.82150 -13.73760 -13.53800 -13.46699 -13.39947 -13.37583 -13.04946 -12.84670 -12.60998 -12.17608 -11.98023 -11.82315 -11.59565 -11.33607 -11.24634 -11.13467 -10.53293 -10.31905 -10.17699 -10.12405 -9.72595 -9.46812 -9.27832 -4.92398 -0.44098 -0.19728 1.03229 1.22763 1.32738 1.50836 1.68871 1.71811 1.74672 1.97581 1.97670 2.05784 2.66530 3.19549 3.31742 3.35973 3.45047 3.48522 3.59053 3.62136 3.73266 3.79083 3.83462 4.00294 4.01512 4.04343 4.10648 4.20682 4.25145 4.33350 4.39294 4.42348 4.53319 4.62854 4.69403 4.72124 4.75593 4.79345 4.83025 4.90985 4.94032 5.01947 5.06729 5.07735 5.16584 5.18284 5.21230 5.34683 5.56158 5.60230 5.77535 6.05691 6.22021 6.45260 6.70389 6.81599 6.95819 7.13715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.066 3.934 3 C -0.169 4.169 4 C -0.158 4.158 5 C -0.057 4.057 6 O -0.563 6.563 7 Si 0.786 3.214 8 C 0.066 3.934 9 N -0.561 5.561 10 C 0.288 3.712 11 N -0.516 5.516 12 C 0.184 3.816 13 C -0.241 4.241 14 C 0.571 3.429 15 O -0.565 6.565 16 N -0.701 5.701 17 C 0.118 3.882 18 H 0.095 0.905 19 C -0.115 4.115 20 C -0.111 4.111 21 H 0.083 0.917 22 C 0.138 3.862 23 N -0.376 5.376 24 C 0.053 3.947 25 C -0.294 4.294 26 C 0.024 3.976 27 N -0.331 5.331 28 C -0.134 4.134 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.401 0.599 34 H -0.288 1.288 35 H -0.279 1.279 36 H 0.200 0.800 37 H 0.437 0.563 38 H 0.199 0.801 39 H 0.414 0.586 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.207 0.793 45 H 0.159 0.841 46 H 0.192 0.808 47 H 0.090 0.910 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 0.425 -2.663 3.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 C -0.176 4.176 4 C -0.165 4.165 5 C -0.166 4.166 6 O -0.373 6.373 7 Si 0.689 3.311 8 C -0.060 4.060 9 N -0.168 5.168 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.015 3.985 13 C -0.249 4.249 14 C 0.359 3.641 15 O -0.445 6.445 16 N -0.353 5.353 17 C 0.013 3.987 18 H 0.113 0.887 19 C -0.154 4.154 20 C -0.130 4.130 21 H 0.102 0.898 22 C 0.018 3.982 23 N -0.159 5.159 24 C -0.094 4.094 25 C -0.323 4.323 26 C -0.161 4.161 27 N -0.153 5.153 28 C -0.173 4.173 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.252 0.748 34 H -0.215 1.215 35 H -0.206 1.206 36 H 0.216 0.784 37 H 0.278 0.722 38 H 0.216 0.784 39 H 0.253 0.747 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.177 0.823 46 H 0.209 0.791 47 H 0.109 0.891 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.600 2.349 -2.577 5.011 hybrid contribution 0.111 -1.359 0.334 1.404 sum 3.710 0.990 -2.243 4.447 Atomic orbital electron populations 1.21128 0.88792 1.04496 1.03328 1.20136 0.97602 0.89792 0.86708 1.19732 0.93304 0.94191 1.10351 1.20013 0.94920 0.90310 1.11254 1.24372 0.90391 1.12898 0.88895 1.86486 1.35555 1.86217 1.29051 0.93757 0.88701 0.72593 0.76040 1.22021 0.84990 0.96510 1.02513 1.41503 1.10261 1.01983 1.63065 1.18768 0.89617 0.86690 0.99421 1.66531 1.40766 0.96293 1.19322 1.23059 0.89803 0.95248 0.90349 1.20561 0.95461 0.93513 1.15331 1.17979 0.86494 0.84021 0.75557 1.90735 1.15103 1.87531 1.51176 1.45732 1.11128 1.04675 1.73726 1.22507 0.97785 0.80847 0.97515 0.88736 1.23314 1.02330 0.91923 0.97826 1.22515 0.99114 0.94038 0.97363 0.89814 1.22030 0.95098 0.91180 0.89857 1.49001 1.44355 1.05516 1.17017 1.23201 1.00507 0.84575 1.01101 1.21860 1.11306 1.00969 0.98176 1.24309 1.00187 0.90460 1.01125 1.77330 1.16681 1.24658 0.96662 1.23449 1.02256 0.95104 0.96505 0.90345 0.89321 0.89797 0.90233 0.74797 1.21527 1.20573 0.78360 0.72153 0.78413 0.74729 0.89127 0.86349 0.85078 0.88931 0.77614 0.82304 0.79086 0.89104 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.46 71.24 0.60 -0.42 16 2 C 0.07 0.65 5.98 -19.25 -0.12 0.53 16 3 C -0.17 -1.60 6.16 -20.19 -0.12 -1.73 16 4 C -0.16 -0.92 5.61 -18.64 -0.10 -1.02 16 5 C -0.06 -0.01 1.87 71.24 0.13 0.12 16 6 O -0.56 -0.24 11.64 -148.98 -1.73 -1.97 16 7 Si 0.79 -3.36 30.80 68.60 2.11 -1.25 16 8 C 0.07 0.16 10.44 82.97 0.87 1.02 16 9 N -0.56 -1.56 6.04 -192.25 -1.16 -2.72 16 10 C 0.29 2.40 8.42 134.03 1.13 3.53 16 11 N -0.52 -3.78 10.37 -191.75 -1.99 -5.77 16 12 C 0.18 0.61 10.67 85.20 0.91 1.52 16 13 C -0.24 -1.69 5.89 -19.99 -0.12 -1.81 16 14 C 0.57 4.07 7.72 86.73 0.67 4.74 16 15 O -0.57 -7.95 13.09 -3.94 -0.05 -8.01 16 16 N -0.70 0.42 5.31 -443.10 -2.35 -1.93 16 17 C 0.12 -0.05 4.24 45.51 0.19 0.15 16 18 H 0.09 0.46 7.47 -2.38 -0.02 0.44 16 19 C -0.12 0.87 7.39 31.12 0.23 1.10 16 20 C -0.11 0.38 3.84 -10.21 -0.04 0.34 16 21 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 22 C 0.14 -0.72 6.35 86.38 0.55 -0.17 16 23 N -0.38 -0.77 3.68 -348.07 -1.28 -2.05 16 24 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 25 C -0.29 -0.66 10.80 21.99 0.24 -0.42 16 26 C 0.02 0.14 12.02 85.23 1.02 1.16 16 27 N -0.33 -2.74 12.42 -57.03 -0.71 -3.45 16 28 C -0.13 -0.12 7.44 31.18 0.23 0.12 16 29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.53 4.79 -2.39 -0.01 0.52 16 31 H 0.08 0.97 5.95 -2.38 -0.01 0.96 16 32 H 0.08 -0.11 7.13 -2.39 -0.02 -0.12 16 33 H 0.40 -4.03 8.74 -74.06 -0.65 -4.68 16 34 H -0.29 -0.37 7.11 99.48 0.71 0.33 16 35 H -0.28 -0.08 7.04 99.48 0.70 0.62 16 36 H 0.20 -0.62 6.31 -2.91 -0.02 -0.64 16 37 H 0.44 -1.38 8.96 -92.71 -0.83 -2.21 16 38 H 0.20 -1.17 6.43 -2.91 -0.02 -1.19 16 39 H 0.41 -3.05 6.80 -92.71 -0.63 -3.68 16 40 H 0.09 -0.75 8.14 -2.39 -0.02 -0.76 16 41 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 42 H 0.13 -1.54 8.07 -2.39 -0.02 -1.56 16 43 H 0.09 -0.58 7.85 -2.39 -0.02 -0.59 16 44 H 0.21 -1.79 8.06 -2.91 -0.02 -1.82 16 45 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 46 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 47 H 0.09 -0.02 7.90 -2.38 -0.02 -0.04 16 48 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 Total: 0.00 -31.56 393.45 -0.95 -32.51 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: -1.02 Total: -15.05 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 7.23 Total: 9.68 kcal Atomic # 7 Polarization: -8.43 SS G_CDS: -7.49 Total: -15.92 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.79 Total: -9.98 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.11 Total: -1.25 kcal Total: -31.56 -0.95 -32.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.905 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds