Wall clock time and date at job start Sun Mar 7 2021 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46969 * 2 1 4 4 C 1.50701 * 109.47203 * 119.99930 * 2 1 3 5 5 C 1.38338 * 119.86810 * 65.00327 * 4 2 1 6 6 C 1.37999 * 120.12229 * 179.97438 * 5 4 2 7 7 C 1.39404 * 119.87609 * 359.97438 * 6 5 4 8 8 C 1.48272 * 120.12884 * 179.97438 * 7 6 5 9 9 C 1.39508 * 119.97397 * 180.02562 * 8 7 6 10 10 C 1.37668 * 120.02477 * 180.02562 * 9 8 7 11 11 C 1.39714 * 119.97352 * 0.02562 * 10 9 8 12 12 C 1.47718 * 120.02136 * 179.97438 * 11 10 9 13 13 O 1.21571 * 120.00334 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99660 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99895 * 180.02562 * 14 12 11 16 16 H 1.09008 * 112.90540 * 336.24622 * 15 14 12 17 17 C 1.53775 * 113.61656 * 107.50207 * 15 14 12 18 18 C 1.53779 * 87.08438 * 139.98199 * 17 15 14 19 19 H 1.09002 * 113.61731 * 89.11293 * 18 17 15 20 20 C 1.53000 * 113.69071 * 220.00724 * 18 17 15 21 21 N 1.46499 * 109.46974 * 274.06244 * 20 18 17 22 22 C 1.34949 * 126.03297 * 124.99929 * 21 20 18 23 23 C 1.35321 * 107.74095 * 179.97438 * 22 21 20 24 24 C 1.39866 * 107.92295 * 359.97438 * 23 22 21 25 25 N 1.30840 * 108.20233 * 359.74158 * 24 23 22 26 26 C 1.53777 * 113.61534 * 204.99945 * 15 14 12 27 27 C 1.39704 * 119.95155 * 0.25807 * 11 10 9 28 28 C 1.37664 * 119.97626 * 359.50536 * 27 11 10 29 29 C 1.39400 * 119.74240 * 0.25955 * 7 6 5 30 30 C 1.38004 * 119.87301 * 359.51315 * 29 7 6 31 31 H 0.96707 * 114.00129 * 299.99719 * 1 2 3 32 32 H 1.08994 * 109.46937 * 240.00016 * 2 1 3 33 33 H 1.48501 * 110.00127 * 178.68358 * 3 2 1 34 34 H 1.48504 * 109.99971 * 300.00183 * 3 2 1 35 35 H 1.07992 * 119.94020 * 359.97200 * 5 4 2 36 36 H 1.08002 * 120.06108 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.98725 * 0.03065 * 9 8 7 38 38 H 1.07993 * 120.01456 * 180.02562 * 10 9 8 39 39 H 0.97002 * 120.00021 * 359.97438 * 14 12 11 40 40 H 1.08993 * 113.61636 * 25.42563 * 17 15 14 41 41 H 1.09008 * 113.61006 * 254.52805 * 17 15 14 42 42 H 1.09001 * 109.47043 * 34.05895 * 20 18 17 43 43 H 1.08992 * 109.47277 * 154.06065 * 20 18 17 44 44 H 1.07995 * 126.13333 * 359.96178 * 22 21 20 45 45 H 1.08004 * 126.03706 * 180.02562 * 23 22 21 46 46 H 1.08000 * 125.90220 * 179.97438 * 24 23 22 47 47 H 1.08997 * 113.61941 * 105.46412 * 26 15 14 48 48 H 1.09005 * 113.61136 * 334.56577 * 26 15 14 49 49 H 1.07999 * 120.01615 * 179.74623 * 27 11 10 50 50 H 1.08003 * 119.99320 * 180.23142 * 28 27 11 51 51 H 1.08008 * 120.06569 * 179.74284 * 29 7 6 52 52 H 1.07997 * 119.93762 * 180.25670 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6831 -2.0612 1.3957 6 6 2.1411 -2.7171 2.5202 7 6 2.8557 -2.0159 3.4903 8 6 3.3499 -2.7149 4.7009 9 6 4.0642 -2.0099 5.6700 10 6 4.5240 -2.6580 6.7942 11 6 4.2756 -4.0223 6.9641 12 6 4.7690 -4.7189 8.1697 13 8 5.3911 -4.1049 9.0147 14 7 4.5295 -6.0351 8.3328 15 6 5.0183 -6.7259 9.5287 16 1 5.8712 -6.2263 9.9884 17 6 3.9069 -7.0911 10.5268 18 6 4.6426 -8.4249 10.7374 19 1 5.3927 -8.3899 11.5275 20 6 3.7078 -9.6301 10.8586 21 7 3.2732 -9.7729 12.2504 22 6 1.9956 -9.8236 12.6818 23 6 2.0200 -9.9598 14.0279 24 6 3.3583 -9.9941 14.4329 25 7 4.1105 -9.8880 13.3675 26 6 5.2247 -8.2362 9.3266 27 6 3.5653 -4.7285 5.9902 28 6 3.1022 -4.0775 4.8691 29 6 3.0985 -0.6538 3.3206 30 6 2.6397 -0.0094 2.1898 31 1 -0.3934 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8899 33 1 3.5346 1.7704 0.0321 34 1 1.5614 2.4679 -1.2085 35 1 1.1298 -2.6035 0.6434 36 1 1.9464 -3.7717 2.6484 37 1 4.2564 -0.9554 5.5382 38 1 5.0766 -2.1120 7.5444 39 1 4.0328 -6.5249 7.6588 40 1 2.9254 -7.2017 10.0660 41 1 3.8904 -6.4568 11.4132 42 1 2.8374 -9.4805 10.2198 43 1 4.2355 -10.5319 10.5484 44 1 1.1119 -9.7657 12.0637 45 1 1.1583 -10.0305 14.6752 46 1 3.7102 -10.0948 15.4490 47 1 6.2720 -8.5267 9.2439 48 1 4.6034 -8.6601 8.5376 49 1 3.3762 -5.7841 6.1185 50 1 2.5499 -4.6224 4.1178 51 1 3.6480 -0.1045 4.0710 52 1 2.8309 1.0450 2.0554 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:24 Heat of formation + Delta-G solvation = 99.388298 kcal Electronic energy + Delta-G solvation = -33123.723014 eV Core-core repulsion = 28636.330340 eV Total energy + Delta-G solvation = -4487.392674 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.06894 -41.55676 -40.86010 -39.91580 -38.97466 -37.50268 -35.31423 -34.11830 -33.43896 -32.54106 -31.57751 -31.02902 -30.76523 -28.53887 -27.01928 -26.76024 -24.98764 -24.65743 -23.68215 -22.59632 -22.28543 -22.03010 -21.54297 -21.36901 -20.51291 -19.17422 -18.43248 -18.24289 -17.78940 -17.39568 -16.86230 -16.47892 -16.36449 -16.24676 -16.11960 -15.91735 -15.75823 -15.40568 -15.21642 -15.04663 -14.93210 -14.83895 -14.51437 -14.36229 -14.26844 -14.13546 -14.03996 -13.66254 -13.59414 -13.49907 -13.33296 -13.20456 -12.88628 -12.73897 -12.54282 -12.33029 -12.11483 -11.95467 -11.87206 -11.60355 -11.55573 -11.48005 -11.09630 -10.77290 -10.41775 -10.32561 -10.14385 -10.06517 -9.95523 -9.46628 -9.07601 -5.01681 -0.69606 0.34842 0.40597 0.49675 1.01778 1.30180 1.61834 1.67722 1.76590 1.95329 1.96554 2.05573 2.60059 3.00838 3.35526 3.40980 3.48436 3.51253 3.54920 3.63131 3.67367 3.74858 3.80314 3.87858 3.92024 4.01521 4.05308 4.09903 4.18339 4.27005 4.28466 4.33608 4.37240 4.47651 4.50987 4.59861 4.64719 4.65485 4.67656 4.75100 4.79841 4.89142 4.91320 4.91686 4.95767 5.01253 5.08726 5.12681 5.16600 5.19298 5.20702 5.26631 5.41556 5.49987 5.50925 5.65380 5.76187 5.79573 5.93354 6.20931 6.44482 6.75560 6.79454 7.11347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.770 3.230 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.123 4.123 10 C -0.073 4.073 11 C -0.153 4.153 12 C 0.555 3.445 13 O -0.585 6.585 14 N -0.698 5.698 15 C 0.116 3.884 16 H 0.087 0.913 17 C -0.140 4.140 18 C -0.116 4.116 19 H 0.080 0.920 20 C 0.140 3.860 21 N -0.374 5.374 22 C 0.054 3.946 23 C -0.294 4.294 24 C 0.028 3.972 25 N -0.340 5.340 26 C -0.116 4.116 27 C -0.072 4.072 28 C -0.120 4.120 29 C -0.108 4.108 30 C -0.119 4.119 31 H 0.395 0.605 32 H 0.107 0.893 33 H -0.287 1.287 34 H -0.301 1.301 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.125 0.875 39 H 0.418 0.582 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.160 0.840 46 H 0.194 0.806 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.146 0.854 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -2.662 -3.610 7.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.676 3.324 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.140 4.140 10 C -0.092 4.092 11 C -0.156 4.156 12 C 0.344 3.656 13 O -0.467 6.467 14 N -0.350 5.350 15 C 0.011 3.989 16 H 0.105 0.895 17 C -0.178 4.178 18 C -0.135 4.135 19 H 0.098 0.902 20 C 0.020 3.980 21 N -0.157 5.157 22 C -0.092 4.092 23 C -0.324 4.324 24 C -0.157 4.157 25 N -0.162 5.162 26 C -0.155 4.155 27 C -0.090 4.090 28 C -0.137 4.137 29 C -0.125 4.125 30 C -0.136 4.136 31 H 0.245 0.755 32 H 0.124 0.876 33 H -0.214 1.214 34 H -0.229 1.229 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.257 0.743 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.150 0.850 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.177 0.823 46 H 0.211 0.789 47 H 0.101 0.899 48 H 0.142 0.858 49 H 0.179 0.821 50 H 0.175 0.825 51 H 0.164 0.836 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.466 -1.924 -4.577 6.055 hybrid contribution -0.551 -0.525 0.299 0.818 sum -4.016 -2.449 -4.278 6.359 Atomic orbital electron populations 1.86476 1.17137 1.82148 1.50523 1.25136 0.85333 1.10520 0.97287 0.93790 0.77903 0.75709 0.84948 1.20527 0.99355 0.95240 0.96849 1.21110 0.99024 0.93966 0.97954 1.21521 0.96819 1.01039 0.93071 1.18936 0.99228 0.93863 0.93996 1.19157 0.95995 0.94024 0.93091 1.21381 0.98278 1.01269 0.93110 1.21262 0.96996 0.93553 0.97346 1.19992 1.04451 0.95157 0.95978 1.18659 0.78500 0.82663 0.85771 1.90778 1.42838 1.67258 1.45800 1.45742 1.56919 1.08411 1.23880 1.22437 0.97465 0.92968 0.86013 0.89486 1.23535 0.99371 0.96184 0.98741 1.22525 0.98415 0.93907 0.98700 0.90200 1.22020 1.00737 0.99013 0.76219 1.48960 1.04146 1.55437 1.07151 1.23187 0.89277 1.00221 0.96532 1.21867 0.97949 1.17187 0.95356 1.24301 0.93009 0.99611 0.98790 1.77270 1.19861 1.25576 0.93523 1.23320 1.03314 0.92525 0.96292 1.21478 0.94545 1.00931 0.92077 1.21487 1.00315 0.93446 0.98496 1.21492 0.99269 0.93758 0.98006 1.21131 0.98405 1.00179 0.93892 0.75473 0.87569 1.21439 1.22929 0.85046 0.83500 0.83482 0.85704 0.74298 0.87371 0.93668 0.85022 0.88854 0.77577 0.82260 0.78945 0.89931 0.85763 0.82115 0.82508 0.83644 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.54 12.83 -148.98 -1.91 -1.37 16 2 C -0.07 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.77 -2.14 29.79 68.60 2.04 -0.10 16 4 C -0.12 0.20 5.36 -19.82 -0.11 0.09 16 5 C -0.10 0.15 9.67 22.24 0.21 0.37 16 6 C -0.11 0.30 9.43 22.49 0.21 0.51 16 7 C -0.06 0.10 5.88 -20.05 -0.12 -0.02 16 8 C -0.02 0.03 5.88 -20.00 -0.12 -0.08 16 9 C -0.12 0.03 9.41 22.44 0.21 0.24 16 10 C -0.07 -0.24 9.58 22.49 0.22 -0.02 16 11 C -0.15 -0.26 5.88 -20.06 -0.12 -0.38 16 12 C 0.55 2.97 7.77 86.75 0.67 3.65 16 13 O -0.59 -8.88 15.93 -3.94 -0.06 -8.94 16 14 N -0.70 1.84 5.30 -443.03 -2.35 -0.51 16 15 C 0.12 -0.13 4.24 45.51 0.19 0.06 16 16 H 0.09 0.49 7.47 -2.38 -0.02 0.48 16 17 C -0.14 0.29 7.43 31.12 0.23 0.52 16 18 C -0.12 0.39 3.86 -10.27 -0.04 0.35 16 19 H 0.08 0.25 8.00 -2.39 -0.02 0.23 16 20 C 0.14 -0.78 6.34 86.38 0.55 -0.24 16 21 N -0.37 -0.67 3.68 -348.07 -1.28 -1.95 16 22 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 23 C -0.29 -0.58 10.80 21.99 0.24 -0.34 16 24 C 0.03 0.15 12.03 85.23 1.02 1.17 16 25 N -0.34 -2.83 12.30 -57.02 -0.70 -3.53 16 26 C -0.12 0.87 7.39 31.12 0.23 1.10 16 27 C -0.07 0.35 9.52 22.49 0.21 0.57 16 28 C -0.12 0.56 9.41 22.44 0.21 0.77 16 29 C -0.11 0.28 9.43 22.49 0.21 0.49 16 30 C -0.12 0.37 8.65 22.24 0.19 0.56 16 31 H 0.40 -3.51 8.70 -74.05 -0.64 -4.16 16 32 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 33 H -0.29 -0.63 7.11 99.48 0.71 0.07 16 34 H -0.30 -1.53 7.11 99.48 0.71 -0.83 16 35 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 36 H 0.15 -1.09 6.19 -2.91 -0.02 -1.11 16 37 H 0.15 -0.59 6.19 -2.91 -0.02 -0.61 16 38 H 0.12 0.67 7.64 -2.91 -0.02 0.65 16 39 H 0.42 -4.35 6.75 -92.71 -0.63 -4.98 16 40 H 0.11 -0.71 7.92 -2.39 -0.02 -0.73 16 41 H 0.04 0.19 8.14 -2.38 -0.02 0.17 16 42 H 0.13 -1.68 7.81 -2.39 -0.02 -1.70 16 43 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.21 -1.91 8.06 -2.91 -0.02 -1.94 16 45 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 46 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 47 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.12 -1.72 8.08 -2.38 -0.02 -1.74 16 49 H 0.16 -2.03 6.39 -2.91 -0.02 -2.05 16 50 H 0.16 -1.55 6.19 -2.91 -0.02 -1.56 16 51 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 52 H 0.15 -1.02 4.89 -2.91 -0.01 -1.03 16 Total: 0.00 -30.34 429.24 0.97 -29.37 By element: Atomic # 1 Polarization: -23.32 SS G_CDS: -0.25 Total: -23.56 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.48 Total: 10.60 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -4.33 Total: -5.99 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.97 Total: -10.31 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: 2.04 Total: -0.10 kcal Total: -30.34 0.97 -29.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.756 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds