Wall clock time and date at job start Sun Mar 7 2021 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86300 * 109.47178 * 2 1 4 4 C 1.50692 * 109.47106 * 239.99361 * 2 1 3 5 5 C 1.38903 * 119.67300 * 120.00821 * 4 2 1 6 6 C 1.36479 * 120.61584 * 179.97438 * 5 4 2 7 7 C 1.40060 * 119.82930 * 359.97438 * 6 5 4 8 8 C 1.41592 * 133.38464 * 180.02562 * 7 6 5 9 9 C 1.35865 * 107.73254 * 179.97438 * 8 7 6 10 10 C 1.47055 * 125.42763 * 180.02562 * 9 8 7 11 11 O 1.21647 * 120.00356 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00193 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00402 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84638 * 336.19326 * 13 12 10 15 15 C 1.53785 * 113.69278 * 107.46126 * 13 12 10 16 16 C 1.53779 * 87.07858 * 139.99348 * 15 13 12 17 17 H 1.09007 * 113.68789 * 89.13214 * 16 15 13 18 18 C 1.53006 * 113.61122 * 220.01730 * 16 15 13 19 19 N 1.46500 * 109.47231 * 272.50128 * 18 16 15 20 20 C 1.34945 * 126.03821 * 124.99845 * 19 18 16 21 21 C 1.35319 * 107.74770 * 180.02562 * 20 19 18 22 22 C 1.39877 * 107.91756 * 0.02562 * 21 20 19 23 23 N 1.30833 * 108.20100 * 359.97438 * 22 21 20 24 24 C 1.53771 * 87.08367 * 334.56906 * 16 15 13 25 25 N 1.38148 * 109.14391 * 0.25905 * 9 8 7 26 26 C 1.37489 * 108.79261 * 359.56547 * 25 9 8 27 27 C 1.37710 * 119.68156 * 299.98040 * 4 2 1 28 28 H 0.96695 * 113.99919 * 300.00540 * 1 2 3 29 29 H 1.09004 * 109.46645 * 119.99633 * 2 1 3 30 30 H 1.48498 * 109.99489 * 299.99443 * 3 2 1 31 31 H 1.48498 * 110.00050 * 61.31191 * 3 2 1 32 32 H 1.08004 * 119.69166 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.08567 * 179.97438 * 6 5 4 34 34 H 1.08001 * 126.13306 * 359.97438 * 8 7 6 35 35 H 0.97005 * 119.99455 * 359.97438 * 12 10 9 36 36 H 1.08999 * 113.61202 * 25.44472 * 15 13 12 37 37 H 1.09003 * 113.60858 * 254.54452 * 15 13 12 38 38 H 1.08996 * 109.46872 * 152.49871 * 18 16 15 39 39 H 1.08996 * 109.46775 * 32.50030 * 18 16 15 40 40 H 1.07994 * 126.12681 * 0.02720 * 20 19 18 41 41 H 1.07996 * 126.03879 * 180.02562 * 21 20 19 42 42 H 1.07995 * 125.89269 * 180.02562 * 22 21 20 43 43 H 1.09002 * 113.61825 * 139.98242 * 24 16 15 44 44 H 1.09000 * 113.61559 * 270.80012 * 24 16 15 45 45 H 0.97004 * 125.60385 * 179.74210 * 25 9 8 46 46 H 1.07996 * 120.09396 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7297 -0.0291 -2.1402 6 6 3.1955 -0.6539 -3.2605 7 6 2.8678 -1.9949 -3.4976 8 6 3.1836 -2.9043 -4.5358 9 6 2.5870 -4.0894 -4.2435 10 6 2.6620 -5.3070 -5.0648 11 8 3.2993 -5.3036 -6.1010 12 7 2.0246 -6.4268 -4.6695 13 6 2.0987 -7.6396 -5.4879 14 1 2.3179 -7.4308 -6.5351 15 6 2.9835 -8.7414 -4.8812 16 6 1.9227 -9.7470 -5.3590 17 1 2.0928 -10.1154 -6.3707 18 6 1.6469 -10.8695 -4.3565 19 7 2.5880 -11.9691 -4.5834 20 6 3.4101 -12.5133 -3.6621 21 6 4.1144 -13.4974 -4.2677 22 6 3.7091 -13.5561 -5.6052 23 7 2.7940 -12.6406 -5.7955 24 6 0.9092 -8.5929 -5.2858 25 7 1.8944 -3.9669 -3.0545 26 6 2.0589 -2.6885 -2.5759 27 6 1.5950 -2.0291 -1.4414 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 0.8901 30 1 1.5616 2.4677 -1.2086 31 1 1.5878 2.4586 1.2241 32 1 2.9840 1.0049 -1.9593 33 1 3.8153 -0.1158 -3.9624 34 1 3.7900 -2.6937 -5.4044 35 1 1.5167 -6.4297 -3.8431 36 1 3.0719 -8.6824 -3.7964 37 1 3.9463 -8.8522 -5.3800 38 1 0.6271 -11.2312 -4.4876 39 1 1.7700 -10.4893 -3.3425 40 1 3.4914 -12.2167 -2.6269 41 1 4.8580 -14.1262 -3.8008 42 1 4.0859 -14.2397 -6.3515 43 1 0.1973 -8.5839 -6.1112 44 1 0.4294 -8.4942 -4.3121 45 1 1.3790 -4.6683 -2.6263 46 1 0.9745 -2.5506 -0.7277 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:29 Heat of formation + Delta-G solvation = 106.382619 kcal Electronic energy + Delta-G solvation = -29135.277247 eV Core-core repulsion = 24994.751859 eV Total energy + Delta-G solvation = -4140.525388 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.73210 -42.06415 -41.09981 -39.61671 -38.81340 -37.09314 -35.33782 -33.65399 -33.29416 -31.25253 -30.95399 -30.44255 -28.66709 -26.99800 -26.78778 -24.93052 -23.72378 -22.95540 -22.06537 -21.94187 -21.56729 -21.38789 -20.53174 -19.46060 -18.52777 -18.33165 -18.00666 -17.37217 -17.04173 -16.59551 -16.41607 -16.34167 -16.09395 -15.71113 -15.28202 -15.18012 -15.05885 -14.88841 -14.70223 -14.50775 -14.28484 -14.19454 -13.89157 -13.69319 -13.54015 -13.51812 -13.37499 -12.96194 -12.70362 -12.41683 -12.32277 -12.17274 -11.91892 -11.70439 -11.58261 -11.53031 -11.37201 -10.98687 -10.46285 -10.35786 -10.26915 -9.48240 -9.33959 -8.83507 -4.87429 -0.39267 0.51201 0.91238 1.00102 1.33349 1.63701 1.65486 1.72922 1.94349 1.95304 2.00832 2.12966 2.72284 3.31793 3.39671 3.44360 3.47626 3.55740 3.65090 3.71116 3.85941 3.89359 4.03451 4.08089 4.15120 4.21669 4.28744 4.32112 4.43324 4.45667 4.48818 4.57083 4.61419 4.62987 4.71871 4.78065 4.86609 4.88071 4.92510 4.97412 4.97897 5.09757 5.15937 5.28522 5.38457 5.44287 5.53436 5.56500 5.74831 5.96205 6.18940 6.23311 6.42163 6.61312 6.77945 6.91611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.081 4.081 3 Si 0.762 3.238 4 C -0.053 4.053 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.136 4.136 8 C -0.119 4.119 9 C 0.011 3.989 10 C 0.586 3.414 11 O -0.563 6.563 12 N -0.699 5.699 13 C 0.118 3.882 14 H 0.093 0.907 15 C -0.140 4.140 16 C -0.115 4.115 17 H 0.082 0.918 18 C 0.140 3.860 19 N -0.375 5.375 20 C 0.054 3.946 21 C -0.294 4.294 22 C 0.028 3.972 23 N -0.339 5.339 24 C -0.118 4.118 25 N -0.562 5.562 26 C 0.108 3.892 27 C -0.109 4.109 28 H 0.395 0.605 29 H 0.101 0.899 30 H -0.302 1.302 31 H -0.287 1.287 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.207 0.793 41 H 0.160 0.840 42 H 0.194 0.806 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.432 0.568 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 -0.590 9.189 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.190 4.190 3 Si 0.668 3.332 4 C -0.054 4.054 5 C -0.167 4.167 6 C -0.078 4.078 7 C -0.141 4.141 8 C -0.146 4.146 9 C -0.099 4.099 10 C 0.373 3.627 11 O -0.441 6.441 12 N -0.349 5.349 13 C 0.013 3.987 14 H 0.111 0.889 15 C -0.178 4.178 16 C -0.135 4.135 17 H 0.100 0.900 18 C 0.020 3.980 19 N -0.158 5.158 20 C -0.092 4.092 21 C -0.324 4.324 22 C -0.157 4.157 23 N -0.161 5.161 24 C -0.156 4.156 25 N -0.168 5.168 26 C -0.002 4.002 27 C -0.129 4.129 28 H 0.246 0.754 29 H 0.119 0.881 30 H -0.229 1.229 31 H -0.214 1.214 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.252 0.748 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.224 0.776 41 H 0.177 0.823 42 H 0.211 0.789 43 H 0.102 0.898 44 H 0.141 0.859 45 H 0.273 0.727 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.740 0.387 7.108 7.328 hybrid contribution -0.849 -0.930 1.102 1.673 sum -2.589 -0.543 8.209 8.625 Atomic orbital electron populations 1.86546 1.18419 1.80676 1.51149 1.24956 0.84096 1.11554 0.98410 0.94059 0.90560 0.72398 0.76230 1.19223 0.97299 0.93183 0.95732 1.20648 1.00709 1.00438 0.94916 1.20608 0.98124 0.91901 0.97126 1.18436 1.03527 0.95585 0.96540 1.21100 1.02322 0.91126 1.00026 1.19941 1.03634 0.96061 0.90250 1.17348 0.78918 0.82368 0.84051 1.90865 1.43391 1.84423 1.25448 1.45705 1.52173 1.10350 1.26699 1.22507 0.98479 0.81875 0.95815 0.88863 1.23548 0.97534 0.94494 1.02255 1.22524 0.97802 0.93322 0.99845 0.89986 1.22018 0.91839 0.83101 1.01049 1.48957 1.32003 1.28198 1.06592 1.23175 0.92696 0.95816 0.97556 1.21875 1.09355 1.06250 0.94886 1.24309 0.95527 0.97633 0.98209 1.77267 1.21790 1.11451 1.05607 1.23329 0.95581 0.91484 1.05206 1.41724 1.44628 1.11194 1.19241 1.18412 1.00057 0.85190 0.96565 1.19984 1.02385 0.94446 0.96114 0.75422 0.88128 1.22939 1.21435 0.83860 0.83420 0.82837 0.74834 0.87429 0.93251 0.88884 0.85160 0.77639 0.82255 0.78894 0.89834 0.85941 0.72652 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.09 12.73 -148.98 -1.90 -1.98 16 2 C -0.08 0.20 2.80 71.23 0.20 0.40 16 3 Si 0.76 -2.24 29.75 68.60 2.04 -0.20 16 4 C -0.05 -0.06 5.43 -19.83 -0.11 -0.16 16 5 C -0.15 -0.10 8.59 22.02 0.19 0.09 16 6 C -0.06 -0.11 10.06 22.30 0.22 0.11 16 7 C -0.14 -0.62 6.16 -21.36 -0.13 -0.75 16 8 C -0.12 -0.67 10.53 22.55 0.24 -0.43 16 9 C 0.01 0.03 6.97 39.91 0.28 0.31 16 10 C 0.59 2.70 7.80 86.56 0.68 3.37 16 11 O -0.56 -7.73 16.44 -4.18 -0.07 -7.80 16 12 N -0.70 2.56 5.35 -443.65 -2.38 0.19 16 13 C 0.12 -0.28 4.24 45.52 0.19 -0.09 16 14 H 0.09 0.36 7.46 -2.38 -0.02 0.34 16 15 C -0.14 0.45 7.43 31.12 0.23 0.68 16 16 C -0.12 0.47 3.87 -10.27 -0.04 0.44 16 17 H 0.08 0.19 7.96 -2.38 -0.02 0.17 16 18 C 0.14 -0.84 6.35 86.38 0.55 -0.29 16 19 N -0.37 -0.53 3.68 -348.07 -1.28 -1.82 16 20 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 21 C -0.29 -0.51 10.80 21.99 0.24 -0.27 16 22 C 0.03 0.14 12.03 85.24 1.03 1.17 16 23 N -0.34 -2.68 12.27 -57.02 -0.70 -3.38 16 24 C -0.12 0.96 7.39 31.12 0.23 1.19 16 25 N -0.56 1.19 6.07 -177.18 -1.08 0.11 16 26 C 0.11 0.24 7.25 39.13 0.28 0.52 16 27 C -0.11 -0.10 9.61 22.37 0.22 0.11 16 28 H 0.40 -3.05 8.74 -74.06 -0.65 -3.70 16 29 H 0.10 -0.70 7.96 -2.38 -0.02 -0.72 16 30 H -0.30 -1.50 7.11 99.48 0.71 -0.80 16 31 H -0.29 -0.32 7.11 99.48 0.71 0.38 16 32 H 0.14 -0.47 4.82 -2.91 -0.01 -0.48 16 33 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 34 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.41 -4.62 7.78 -92.70 -0.72 -5.35 16 36 H 0.11 -0.81 7.90 -2.39 -0.02 -0.83 16 37 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.13 -1.70 7.77 -2.39 -0.02 -1.71 16 40 H 0.21 -1.94 8.06 -2.91 -0.02 -1.96 16 41 H 0.16 -0.32 8.06 -2.91 -0.02 -0.35 16 42 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 43 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.12 -1.75 8.08 -2.39 -0.02 -1.77 16 45 H 0.43 -4.21 8.12 -92.71 -0.75 -4.96 16 46 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 Total: 0.00 -29.36 388.63 -0.94 -30.30 By element: Atomic # 1 Polarization: -21.69 SS G_CDS: -1.03 Total: -22.73 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.44 Total: 7.30 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -5.43 Total: -4.89 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.97 Total: -9.78 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.04 Total: -0.20 kcal Total: -29.36 -0.94 -30.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.686 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds