Wall clock time and date at job start Sun Mar 7 2021 02:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86295 * 109.47350 * 2 1 4 4 C 1.50707 * 109.47194 * 119.99779 * 2 1 3 5 5 C 1.34713 * 125.66250 * 64.99916 * 4 2 1 6 6 C 1.40965 * 107.02577 * 179.72699 * 5 4 2 7 7 C 1.35939 * 106.74217 * 0.41141 * 6 5 4 8 8 C 1.47817 * 125.92862 * 179.85551 * 7 6 5 9 9 C 1.39167 * 120.00061 * 179.71479 * 8 7 6 10 10 C 1.39467 * 119.75964 * 179.97438 * 9 8 7 11 11 C 1.47566 * 120.12080 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99773 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00168 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99706 * 179.97438 * 13 11 10 15 15 H 1.08990 * 112.90815 * 23.75009 * 14 13 11 16 16 C 1.53786 * 113.61097 * 155.00087 * 14 13 11 17 17 C 1.53773 * 87.08092 * 139.97770 * 16 14 13 18 18 H 1.09007 * 113.61482 * 89.19789 * 17 16 14 19 19 C 1.53002 * 113.61574 * 220.01674 * 17 16 14 20 20 N 1.46500 * 109.47148 * 184.99961 * 19 17 16 21 21 C 1.34946 * 126.03644 * 124.95038 * 20 19 17 22 22 C 1.35316 * 107.74870 * 180.02562 * 21 20 19 23 23 C 1.39875 * 107.91722 * 0.02562 * 22 21 20 24 24 N 1.30829 * 108.20298 * 0.02562 * 23 22 21 25 25 C 1.53781 * 113.61192 * 252.49341 * 14 13 11 26 26 C 1.40206 * 119.75819 * 0.25587 * 10 9 8 27 27 O 1.35644 * 120.00683 * 179.74639 * 26 10 9 28 28 C 1.38828 * 119.99209 * 359.46074 * 26 10 9 29 29 C 1.37771 * 120.24252 * 0.56412 * 28 26 10 30 30 O 1.34338 * 125.66721 * 244.97871 * 4 2 1 31 31 H 0.96691 * 113.99909 * 60.00337 * 1 2 3 32 32 H 1.08997 * 109.47298 * 239.99306 * 2 1 3 33 33 H 1.48502 * 110.00093 * 298.68128 * 3 2 1 34 34 H 1.48509 * 110.00041 * 59.99777 * 3 2 1 35 35 H 1.08003 * 126.48567 * 359.97438 * 5 4 2 36 36 H 1.08008 * 126.62954 * 180.25631 * 6 5 4 37 37 H 1.08002 * 120.12268 * 359.97438 * 9 8 7 38 38 H 0.96993 * 119.99639 * 359.97438 * 13 11 10 39 39 H 1.08997 * 113.61471 * 25.42696 * 16 14 13 40 40 H 1.09001 * 113.61184 * 254.52856 * 16 14 13 41 41 H 1.08996 * 109.46833 * 64.99953 * 19 17 16 42 42 H 1.08993 * 109.46978 * 305.00429 * 19 17 16 43 43 H 1.07999 * 126.12479 * 0.04451 * 21 20 19 44 44 H 1.07999 * 126.03957 * 180.26092 * 22 21 20 45 45 H 1.08004 * 125.89555 * 179.97438 * 23 22 21 46 46 H 1.08999 * 113.61060 * 105.47061 * 25 14 13 47 47 H 1.09000 * 113.61767 * 334.57303 * 25 14 13 48 48 H 0.96696 * 113.99940 * 89.99557 * 27 26 10 49 49 H 1.08004 * 119.87516 * 180.27676 * 28 26 10 50 50 H 1.08005 * 119.87428 * 179.71665 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7571 -2.0168 1.5094 6 6 2.3873 -2.2625 2.7462 7 6 2.9088 -1.0780 3.1621 8 6 3.6596 -0.8532 4.4154 9 6 4.1456 0.4154 4.7174 10 6 4.8529 0.6220 5.9015 11 6 5.3722 1.9638 6.2294 12 8 5.9882 2.1414 7.2626 13 7 5.1629 2.9925 5.3843 14 6 5.6780 4.3247 5.7102 15 1 6.5240 4.2961 6.3967 16 6 5.9152 5.2121 4.4768 17 6 5.3507 6.3783 5.3050 18 1 6.1075 6.9122 5.8799 19 6 4.4419 7.3143 4.5057 20 7 4.0532 8.4512 5.3440 21 6 4.2241 9.7553 5.0420 22 6 3.7353 10.4845 6.0717 23 6 3.2496 9.5956 7.0363 24 7 3.4404 8.3765 6.6015 25 6 4.5842 5.3244 6.1215 26 6 5.0739 -0.4511 6.7763 27 8 5.7656 -0.2570 7.9269 28 6 4.5795 -1.7112 6.4678 29 6 3.8812 -1.9152 5.2978 30 8 2.6277 -0.1462 2.2313 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5880 2.4585 -1.2242 34 1 1.5615 2.4679 1.2085 35 1 1.2367 -2.7399 0.8989 36 1 2.4428 -3.2084 3.2645 37 1 3.9756 1.2370 4.0373 38 1 4.6712 2.8508 4.5603 39 1 5.2958 4.9445 3.6208 40 1 6.9678 5.3290 4.2189 41 1 3.5496 6.7731 4.1910 42 1 4.9758 7.6764 3.6272 43 1 4.6706 10.1467 4.1400 44 1 3.7193 11.5625 6.1357 45 1 2.7961 9.8685 7.9778 46 1 4.5623 5.5318 7.1913 47 1 3.6010 5.0875 5.7151 48 1 5.2128 -0.0125 8.6816 49 1 4.7470 -2.5355 7.1452 50 1 3.5032 -2.8990 5.0615 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:39 Heat of formation + Delta-G solvation = 54.596699 kcal Electronic energy + Delta-G solvation = -35813.182176 eV Core-core repulsion = 30970.246568 eV Total energy + Delta-G solvation = -4842.935608 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.69783 -42.08035 -41.65726 -40.45551 -39.08900 -38.13866 -37.83847 -35.23859 -34.24459 -33.70479 -32.81213 -32.20071 -30.94901 -30.12924 -28.53252 -26.74697 -26.35481 -25.67898 -24.12828 -23.38759 -22.78266 -21.93346 -21.80866 -21.47053 -21.28416 -20.70249 -19.58073 -18.97204 -18.78968 -18.26705 -17.88647 -17.38233 -17.08335 -16.67638 -16.59531 -16.52482 -16.24011 -15.98396 -15.84091 -15.60215 -15.45179 -15.14210 -14.84908 -14.63728 -14.49807 -14.27496 -14.06117 -14.00216 -13.95727 -13.62456 -13.52704 -13.50381 -13.44698 -13.18554 -13.10380 -12.94889 -12.79750 -12.25638 -12.11094 -11.92669 -11.82781 -11.62894 -11.38053 -11.06718 -10.91088 -10.69283 -10.45220 -10.35495 -10.32209 -10.04935 -9.49588 -8.90755 -4.96406 -0.57425 -0.22429 0.74706 1.00589 1.15836 1.38655 1.49197 1.66482 1.71680 1.85062 1.93504 1.95178 2.03133 2.60858 3.09332 3.19965 3.31634 3.39829 3.44578 3.57616 3.65552 3.65843 3.74851 3.83046 3.97279 4.01658 4.04708 4.08042 4.17460 4.20761 4.28001 4.31792 4.36618 4.42041 4.62801 4.64235 4.66850 4.71308 4.76149 4.78895 4.80470 4.87988 4.91232 4.96185 5.01950 5.02353 5.12290 5.15237 5.17429 5.20428 5.44274 5.49230 5.50741 5.74876 6.00108 6.19154 6.40120 6.51291 6.69761 6.78901 7.09839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.046 4.046 3 Si 0.767 3.233 4 C -0.018 4.018 5 C -0.182 4.182 6 C -0.189 4.189 7 C 0.022 3.978 8 C -0.040 4.040 9 C -0.051 4.051 10 C -0.180 4.180 11 C 0.556 3.444 12 O -0.561 6.561 13 N -0.705 5.705 14 C 0.116 3.884 15 H 0.093 0.907 16 C -0.116 4.116 17 C -0.109 4.109 18 H 0.085 0.915 19 C 0.138 3.862 20 N -0.377 5.377 21 C 0.053 3.947 22 C -0.293 4.293 23 C 0.025 3.975 24 N -0.332 5.332 25 C -0.134 4.134 26 C 0.162 3.838 27 O -0.495 6.495 28 C -0.146 4.146 29 C -0.044 4.044 30 O -0.175 6.175 31 H 0.405 0.595 32 H 0.125 0.875 33 H -0.265 1.265 34 H -0.302 1.302 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.149 0.851 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.208 0.792 44 H 0.160 0.840 45 H 0.193 0.807 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.409 0.591 49 H 0.165 0.835 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 -0.738 -9.143 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.155 4.155 3 Si 0.670 3.330 4 C -0.068 4.068 5 C -0.201 4.201 6 C -0.207 4.207 7 C -0.027 4.027 8 C -0.041 4.041 9 C -0.070 4.070 10 C -0.183 4.183 11 C 0.344 3.656 12 O -0.441 6.441 13 N -0.357 5.357 14 C 0.011 3.989 15 H 0.112 0.888 16 C -0.154 4.154 17 C -0.129 4.129 18 H 0.104 0.896 19 C 0.018 3.982 20 N -0.160 5.160 21 C -0.093 4.093 22 C -0.323 4.323 23 C -0.161 4.161 24 N -0.155 5.155 25 C -0.173 4.173 26 C 0.116 3.884 27 O -0.308 6.308 28 C -0.164 4.164 29 C -0.062 4.062 30 O -0.073 6.073 31 H 0.257 0.743 32 H 0.143 0.857 33 H -0.191 1.191 34 H -0.230 1.230 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.166 0.834 38 H 0.250 0.750 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.225 0.775 44 H 0.178 0.822 45 H 0.209 0.791 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.270 0.730 49 H 0.182 0.818 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.560 -1.267 -8.053 8.171 hybrid contribution -1.834 0.802 -0.081 2.003 sum -1.273 -0.465 -8.134 8.246 Atomic orbital electron populations 1.86521 1.17573 1.80916 1.51755 1.24078 0.84550 1.12892 0.93933 0.93801 0.90246 0.71602 0.77333 1.21743 1.00401 0.93038 0.91568 1.21803 1.03700 0.96085 0.98523 1.22170 1.02012 0.99097 0.97455 1.20430 1.03870 0.87752 0.90698 1.17697 1.00281 0.94533 0.91563 1.21392 0.93722 0.97311 0.94563 1.20269 1.05652 0.93704 0.98712 1.18336 0.79045 0.84735 0.83444 1.90805 1.41920 1.84912 1.26455 1.45827 1.57184 1.08382 1.24264 1.22525 0.97214 0.79769 0.99347 0.88849 1.23325 1.03669 0.91977 0.96435 1.22487 0.97967 0.94385 0.98071 0.89622 1.22024 0.99364 0.84905 0.91878 1.48997 1.46183 1.06299 1.14509 1.23209 1.00634 0.83773 1.01676 1.21865 1.12364 1.01662 0.96359 1.24320 1.00165 0.90288 1.01287 1.77330 1.18679 1.23179 0.96271 1.23406 0.98501 0.95345 1.00080 1.18913 0.89821 0.91813 0.87881 1.84701 1.36331 1.91164 1.18626 1.21585 0.98747 0.96946 0.99119 1.21427 0.94452 0.99219 0.91125 1.83873 1.58396 1.38360 1.26644 0.74308 0.85723 1.19084 1.22968 0.81880 0.80578 0.83364 0.74974 0.86458 0.88788 0.89244 0.84870 0.77531 0.82218 0.79059 0.93539 0.89467 0.73003 0.81767 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.37 12.86 -148.98 -1.92 -1.55 16 2 C -0.05 0.14 2.97 71.24 0.21 0.36 16 3 Si 0.77 -3.22 32.11 68.60 2.20 -1.02 16 4 C -0.02 -0.03 6.24 24.88 0.16 0.12 16 5 C -0.18 -0.21 10.78 22.13 0.24 0.03 16 6 C -0.19 0.02 10.26 22.40 0.23 0.25 16 7 C 0.02 0.04 7.03 24.27 0.17 0.21 16 8 C -0.04 -0.01 5.87 -20.13 -0.12 -0.13 16 9 C -0.05 -0.04 9.20 22.79 0.21 0.17 16 10 C -0.18 -0.82 5.88 -20.04 -0.12 -0.94 16 11 C 0.56 4.42 7.76 86.70 0.67 5.09 16 12 O -0.56 -8.95 14.74 16.98 0.25 -8.70 16 13 N -0.70 -0.85 5.30 -443.16 -2.35 -3.20 16 14 C 0.12 0.13 4.24 45.52 0.19 0.33 16 15 H 0.09 0.61 7.46 -2.39 -0.02 0.59 16 16 C -0.12 0.75 7.39 31.12 0.23 0.98 16 17 C -0.11 0.28 3.82 -10.27 -0.04 0.24 16 18 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 19 C 0.14 -0.60 6.35 86.38 0.55 -0.06 16 20 N -0.38 -1.00 3.68 -348.07 -1.28 -2.28 16 21 C 0.05 -0.01 11.45 83.54 0.96 0.95 16 22 C -0.29 -0.74 10.80 21.99 0.24 -0.50 16 23 C 0.02 0.15 12.03 85.24 1.03 1.17 16 24 N -0.33 -2.96 12.42 -57.02 -0.71 -3.67 16 25 C -0.13 -0.30 7.43 31.12 0.23 -0.07 16 26 C 0.16 0.71 6.72 22.89 0.15 0.87 16 27 O -0.49 -3.36 11.55 -68.59 -0.79 -4.15 16 28 C -0.15 0.17 9.96 22.30 0.22 0.39 16 29 C -0.04 0.12 9.54 22.55 0.22 0.34 16 30 O -0.17 -0.48 8.80 -6.44 -0.06 -0.53 16 31 H 0.40 -3.91 8.74 -74.06 -0.65 -4.56 16 32 H 0.13 -1.11 7.96 -2.39 -0.02 -1.13 16 33 H -0.27 0.56 7.11 99.48 0.71 1.27 16 34 H -0.30 -1.34 7.11 99.48 0.71 -0.64 16 35 H 0.16 -0.27 8.06 -2.91 -0.02 -0.30 16 36 H 0.18 -0.99 7.25 -2.91 -0.02 -1.01 16 37 H 0.15 -0.49 6.24 -2.91 -0.02 -0.51 16 38 H 0.41 -1.89 6.75 -92.71 -0.63 -2.51 16 39 H 0.12 -1.33 8.08 -2.39 -0.02 -1.34 16 40 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 42 H 0.13 -1.50 8.07 -2.39 -0.02 -1.52 16 43 H 0.21 -1.77 8.06 -2.91 -0.02 -1.79 16 44 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 45 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.09 0.15 7.90 -2.39 -0.02 0.13 16 48 H 0.41 0.01 9.06 -74.06 -0.67 -0.66 16 49 H 0.16 -0.89 8.06 -2.91 -0.02 -0.91 16 50 H 0.17 -1.41 6.96 -2.91 -0.02 -1.43 16 Total: 0.00 -32.49 428.41 0.10 -32.39 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -0.88 Total: -17.07 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.63 Total: 9.78 kcal Atomic # 7 Polarization: -4.81 SS G_CDS: -4.34 Total: -9.15 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -2.51 Total: -14.94 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.20 Total: -1.02 kcal Total: -32.49 0.10 -32.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.986 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds