Wall clock time and date at job start Sun Mar 7 2021 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86292 * 109.46992 * 2 1 4 4 C 1.50706 * 109.47033 * 239.99648 * 2 1 3 5 5 C 1.34187 * 126.53787 * 105.04705 * 4 2 1 6 6 N 1.36859 * 109.96581 * 179.97438 * 5 4 2 7 7 C 1.37400 * 109.98526 * 359.97438 * 6 5 4 8 8 C 1.39329 * 133.25604 * 180.02562 * 7 6 5 9 9 C 1.36353 * 120.23362 * 179.73887 * 8 7 6 10 10 C 1.40161 * 120.67193 * 0.52493 * 9 8 7 11 11 C 1.47657 * 119.97386 * 179.75731 * 10 9 8 12 12 O 1.21582 * 120.00146 * 179.71833 * 11 10 9 13 13 N 1.34778 * 119.99920 * 359.71875 * 11 10 9 14 14 C 1.46500 * 119.99919 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.85132 * 25.33083 * 14 13 11 16 16 C 1.53781 * 113.61711 * 156.52821 * 14 13 11 17 17 C 1.53777 * 87.08336 * 140.06028 * 16 14 13 18 18 H 1.09003 * 113.60961 * 89.20081 * 17 16 14 19 19 C 1.53002 * 113.61665 * 220.01809 * 17 16 14 20 20 N 1.46496 * 109.47074 * 185.00090 * 19 17 16 21 21 C 1.34956 * 126.03540 * 124.71606 * 20 19 17 22 22 C 1.35313 * 107.74365 * 179.83784 * 21 20 19 23 23 C 1.39875 * 107.92339 * 0.42670 * 22 21 20 24 24 N 1.30839 * 108.19695 * 359.73395 * 23 22 21 25 25 C 1.53775 * 87.07992 * 334.56762 * 17 16 14 26 26 C 1.39186 * 120.05478 * 359.46990 * 10 9 8 27 27 C 1.39234 * 119.39052 * 0.26306 * 26 10 9 28 28 H 0.96694 * 113.99840 * 60.00540 * 1 2 3 29 29 H 1.09003 * 109.46629 * 120.00005 * 2 1 3 30 30 H 1.48501 * 109.99914 * 298.67587 * 3 2 1 31 31 H 1.48494 * 110.00484 * 60.00037 * 3 2 1 32 32 H 1.08000 * 125.01742 * 359.97438 * 5 4 2 33 33 H 0.97006 * 125.00850 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.88079 * 359.97438 * 8 7 6 35 35 H 1.08008 * 119.66412 * 180.25192 * 9 8 7 36 36 H 0.96998 * 120.00229 * 359.97438 * 13 11 10 37 37 H 1.08997 * 113.61673 * 254.61577 * 16 14 13 38 38 H 1.09009 * 113.61202 * 25.42807 * 16 14 13 39 39 H 1.09003 * 109.47196 * 305.00417 * 19 17 16 40 40 H 1.09000 * 109.46667 * 65.00012 * 19 17 16 41 41 H 1.08002 * 126.12292 * 0.02562 * 21 20 19 42 42 H 1.07998 * 126.03963 * 180.15835 * 22 21 20 43 43 H 1.07995 * 125.89630 * 179.75763 * 23 22 21 44 44 H 1.08993 * 113.61636 * 270.87622 * 25 17 16 45 45 H 1.09008 * 113.61006 * 139.97865 * 25 17 16 46 46 H 1.07996 * 120.30434 * 180.28051 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.4616 -0.1388 -2.3226 6 7 2.8038 -1.1007 -3.2341 7 6 2.4962 -2.3457 -2.7409 8 6 2.6355 -3.6353 -3.2497 9 6 2.2361 -4.7108 -2.5129 10 6 1.6714 -4.5369 -1.2419 11 6 1.2393 -5.7123 -0.4595 12 8 0.7541 -5.5623 0.6452 13 7 1.3829 -6.9514 -0.9699 14 6 0.9537 -8.1175 -0.1939 15 1 0.1732 -7.8808 0.5293 16 6 0.6398 -9.3506 -1.0574 17 6 1.3224 -10.1913 0.0343 18 1 0.6424 -10.5228 0.8192 19 6 2.1903 -11.3242 -0.5173 20 7 2.6977 -12.1353 0.5921 21 6 2.5470 -13.4688 0.7345 22 6 3.1607 -13.8327 1.8842 23 6 3.6966 -12.6808 2.4694 24 7 3.4196 -11.6628 1.6957 25 6 2.1184 -8.9274 0.3996 26 6 1.5230 -3.2576 -0.7142 27 6 1.9350 -2.1578 -1.4622 28 1 -0.3933 0.4416 -0.7650 29 1 1.7923 -0.5139 0.8900 30 1 1.5880 2.4584 -1.2243 31 1 1.5615 2.4679 1.2084 32 1 2.5981 0.9234 -2.4617 33 1 3.2051 -0.9288 -4.1004 34 1 3.0648 -3.7837 -4.2294 35 1 2.3521 -5.7067 -2.9145 36 1 1.7697 -7.0710 -1.8514 37 1 -0.4265 -9.5515 -1.1606 38 1 1.1666 -9.3610 -2.0117 39 1 1.5930 -11.9494 -1.1810 40 1 3.0285 -10.9025 -1.0721 41 1 2.0318 -14.1278 0.0513 42 1 3.2218 -14.8349 2.2822 43 1 4.2446 -12.6392 3.3991 44 1 3.0506 -8.8228 -0.1555 45 1 2.2458 -8.7866 1.4731 46 1 1.0926 -3.1192 0.2666 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:43 Heat of formation + Delta-G solvation = 103.404609 kcal Electronic energy + Delta-G solvation = -29426.339296 eV Core-core repulsion = 25285.684771 eV Total energy + Delta-G solvation = -4140.654525 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47778 -42.03596 -41.19770 -39.61898 -38.05334 -37.46883 -35.21481 -33.57873 -33.28575 -31.03693 -30.81711 -30.47151 -28.45010 -26.72299 -26.50880 -25.40276 -23.56699 -23.47494 -21.90766 -21.73639 -21.44572 -20.96244 -20.53316 -19.35095 -18.47605 -18.21933 -17.59827 -17.49075 -17.00897 -16.51149 -16.31034 -16.03570 -15.95555 -15.66356 -15.45243 -15.18510 -15.08158 -14.84394 -14.81897 -14.78716 -14.13105 -13.99209 -13.76619 -13.63232 -13.54959 -13.46469 -13.38056 -12.96368 -12.62237 -12.52850 -12.24127 -12.14858 -11.85177 -11.80808 -11.60356 -11.36547 -11.05721 -10.82006 -10.49564 -10.32680 -10.13232 -9.47139 -9.34056 -8.82727 -4.87988 -0.17344 0.19457 1.03002 1.33919 1.50333 1.60088 1.69650 1.81049 1.97354 2.00400 2.09263 2.13235 2.86589 3.34494 3.44566 3.50685 3.60015 3.65333 3.73660 3.78421 3.83167 3.89815 3.99822 4.10399 4.13151 4.22187 4.31694 4.35938 4.39292 4.45571 4.53433 4.59500 4.69598 4.72304 4.78246 4.80305 4.81813 4.93499 4.98903 5.00050 5.04811 5.17373 5.19695 5.26026 5.33939 5.45815 5.55323 5.56469 5.77141 5.97377 6.22076 6.50061 6.54831 6.60957 6.81396 7.17468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.065 4.065 3 Si 0.789 3.211 4 C -0.218 4.218 5 C 0.082 3.918 6 N -0.570 5.570 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.066 4.066 10 C -0.179 4.179 11 C 0.558 3.442 12 O -0.593 6.593 13 N -0.698 5.698 14 C 0.113 3.887 15 H 0.085 0.915 16 C -0.112 4.112 17 C -0.110 4.110 18 H 0.081 0.919 19 C 0.139 3.861 20 N -0.377 5.377 21 C 0.053 3.947 22 C -0.294 4.294 23 C 0.024 3.976 24 N -0.332 5.332 25 C -0.134 4.134 26 C -0.024 4.024 27 C -0.128 4.128 28 H 0.384 0.616 29 H 0.098 0.902 30 H -0.257 1.257 31 H -0.311 1.311 32 H 0.210 0.790 33 H 0.439 0.561 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.417 0.583 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.208 0.792 42 H 0.160 0.840 43 H 0.192 0.808 44 H 0.093 0.907 45 H 0.041 0.959 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -1.173 -12.239 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.172 4.172 3 Si 0.691 3.309 4 C -0.225 4.225 5 C -0.045 4.045 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.144 4.144 9 C -0.085 4.085 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.475 6.475 13 N -0.350 5.350 14 C 0.008 3.992 15 H 0.103 0.897 16 C -0.150 4.150 17 C -0.130 4.130 18 H 0.100 0.900 19 C 0.019 3.981 20 N -0.159 5.159 21 C -0.093 4.093 22 C -0.323 4.323 23 C -0.161 4.161 24 N -0.154 5.154 25 C -0.173 4.173 26 C -0.044 4.044 27 C -0.132 4.132 28 H 0.233 0.767 29 H 0.116 0.884 30 H -0.182 1.182 31 H -0.240 1.240 32 H 0.226 0.774 33 H 0.281 0.719 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.256 0.744 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.225 0.775 42 H 0.177 0.823 43 H 0.209 0.791 44 H 0.112 0.888 45 H 0.060 0.940 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.900 0.822 -11.373 12.051 hybrid contribution -1.083 -1.077 0.047 1.528 sum 2.817 -0.255 -11.326 11.674 Atomic orbital electron populations 1.86600 1.19418 1.80652 1.49908 1.24793 0.82732 1.12572 0.97102 0.94074 0.89608 0.69890 0.77297 1.20762 1.11263 0.91502 0.98973 1.22170 0.98378 0.95736 0.88250 1.41755 1.53735 1.03132 1.18773 1.18640 0.99683 0.87934 0.93545 1.20078 1.04311 0.87898 1.02132 1.20889 0.95820 1.00356 0.91485 1.19587 1.09023 0.92085 0.97653 1.18602 0.77122 0.84337 0.85161 1.90766 1.47116 1.86905 1.22707 1.45700 1.63354 1.04429 1.21509 1.22511 0.97461 0.83865 0.95400 0.89670 1.23300 1.02705 0.91010 0.97996 1.22485 0.97737 0.93426 0.99363 0.90032 1.22033 0.98243 0.92818 0.84962 1.49007 1.42152 1.06288 1.18484 1.23212 1.00709 0.85649 0.99749 1.21862 1.10357 1.00780 0.99299 1.24314 1.00388 0.90994 1.00416 1.77337 1.15681 1.24372 0.98058 1.23412 0.98168 0.95132 1.00557 1.20598 0.94568 0.90912 0.98295 1.19182 1.05123 0.93476 0.95449 0.76690 0.88441 1.18221 1.23968 0.77356 0.71939 0.81870 0.81977 0.74375 0.89149 0.85939 0.84898 0.88736 0.77508 0.82266 0.79120 0.88841 0.94013 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.29 12.88 -148.98 -1.92 -6.21 16 2 C -0.06 -0.22 3.06 71.24 0.22 0.00 16 3 Si 0.79 -1.95 30.82 68.60 2.11 0.16 16 4 C -0.22 -0.52 5.58 -18.61 -0.10 -0.62 16 5 C 0.08 -0.40 10.43 82.98 0.87 0.47 16 6 N -0.57 3.41 6.05 -187.49 -1.13 2.28 16 7 C 0.11 0.02 7.27 39.19 0.28 0.31 16 8 C -0.12 0.42 10.00 22.09 0.22 0.64 16 9 C -0.07 0.11 9.46 22.30 0.21 0.32 16 10 C -0.18 -1.27 5.87 -20.10 -0.12 -1.39 16 11 C 0.56 5.83 7.76 86.73 0.67 6.51 16 12 O -0.59 -12.36 15.95 -3.98 -0.06 -12.42 16 13 N -0.70 -0.98 5.31 -443.08 -2.35 -3.34 16 14 C 0.11 0.23 4.22 45.52 0.19 0.42 16 15 H 0.09 0.73 7.50 -2.39 -0.02 0.71 16 16 C -0.11 0.74 7.39 31.12 0.23 0.97 16 17 C -0.11 0.26 3.83 -10.27 -0.04 0.22 16 18 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 19 C 0.14 -0.69 6.35 86.38 0.55 -0.14 16 20 N -0.38 -0.93 3.68 -348.06 -1.28 -2.21 16 21 C 0.05 -0.01 11.45 83.54 0.96 0.94 16 22 C -0.29 -0.76 10.80 21.99 0.24 -0.52 16 23 C 0.02 0.15 12.03 85.24 1.03 1.17 16 24 N -0.33 -2.98 12.42 -57.02 -0.71 -3.69 16 25 C -0.13 -0.36 7.43 31.12 0.23 -0.13 16 26 C -0.02 -0.27 9.64 22.74 0.22 -0.05 16 27 C -0.13 -0.84 6.34 -20.21 -0.13 -0.97 16 28 H 0.38 0.12 8.70 -74.06 -0.64 -0.52 16 29 H 0.10 0.56 7.96 -2.39 -0.02 0.54 16 30 H -0.26 0.73 7.00 99.48 0.70 1.43 16 31 H -0.31 -2.12 7.11 99.48 0.71 -1.42 16 32 H 0.21 -2.50 6.27 -2.91 -0.02 -2.52 16 33 H 0.44 -5.80 8.96 -92.70 -0.83 -6.63 16 34 H 0.16 -1.74 8.06 -2.91 -0.02 -1.76 16 35 H 0.16 -1.58 6.36 -2.91 -0.02 -1.60 16 36 H 0.42 -2.78 6.71 -92.71 -0.62 -3.40 16 37 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.12 -1.53 8.07 -2.38 -0.02 -1.55 16 39 H 0.13 -1.57 8.07 -2.39 -0.02 -1.59 16 40 H 0.09 -0.59 7.84 -2.39 -0.02 -0.61 16 41 H 0.21 -1.80 8.06 -2.91 -0.02 -1.82 16 42 H 0.16 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 44 H 0.09 0.10 7.90 -2.39 -0.02 0.08 16 45 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.10 1.72 7.64 -2.91 -0.02 1.70 16 Total: 0.00 -35.69 388.78 -0.64 -36.33 By element: Atomic # 1 Polarization: -18.03 SS G_CDS: -1.02 Total: -19.05 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.72 Total: 8.14 kcal Atomic # 7 Polarization: -1.47 SS G_CDS: -5.48 Total: -6.95 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.98 Total: -18.63 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.11 Total: 0.16 kcal Total: -35.69 -0.64 -36.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.735 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds