Wall clock time and date at job start Sun Mar 7 2021 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34664 * 124.84722 * 2 1 4 4 C 1.36774 * 108.39214 * 179.97438 * 3 2 1 5 5 C 1.47269 * 126.93783 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99580 * 180.02562 * 5 4 3 7 7 N 1.34771 * 120.00228 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00120 * 180.02562 * 7 5 4 9 9 H 1.08993 * 112.85143 * 336.19553 * 8 7 5 10 10 C 1.53789 * 113.61584 * 107.49969 * 8 7 5 11 11 C 1.53788 * 87.08173 * 139.98159 * 10 8 7 12 12 H 1.08997 * 113.69036 * 89.12656 * 11 10 8 13 13 C 1.52997 * 113.61426 * 220.02443 * 11 10 8 14 14 N 1.46502 * 109.46721 * 272.49742 * 13 11 10 15 15 C 1.34946 * 126.03838 * 125.00364 * 14 13 11 16 16 C 1.35316 * 107.74513 * 179.97438 * 15 14 13 17 17 C 1.39869 * 107.92071 * 359.97438 * 16 15 14 18 18 N 1.30833 * 108.20357 * 359.73963 * 17 16 15 19 19 C 1.53780 * 113.61644 * 204.99857 * 8 7 5 20 20 C 1.46686 * 106.11811 * 359.75955 * 4 3 2 21 21 C 1.34485 * 106.32871 * 0.39282 * 20 4 3 22 22 C 1.50707 * 125.56586 * 179.86864 * 21 20 4 23 23 O 1.42903 * 109.46442 * 209.69412 * 22 21 20 24 24 Si 1.86293 * 109.47256 * 329.68979 * 22 21 20 25 25 H 1.08999 * 109.47069 * 270.00552 * 1 2 3 26 26 H 1.08999 * 109.47147 * 30.00628 * 1 2 3 27 27 H 1.09001 * 109.46654 * 150.00782 * 1 2 3 28 28 H 1.07994 * 125.80137 * 359.97206 * 3 2 1 29 29 H 0.97006 * 119.99824 * 359.97438 * 7 5 4 30 30 H 1.08997 * 113.61530 * 254.52988 * 10 8 7 31 31 H 1.09001 * 113.60914 * 25.43307 * 10 8 7 32 32 H 1.08995 * 109.47565 * 32.49358 * 13 11 10 33 33 H 1.08998 * 109.47284 * 152.49972 * 13 11 10 34 34 H 1.08000 * 126.12867 * 359.94978 * 15 14 13 35 35 H 1.08005 * 126.04129 * 179.97438 * 16 15 14 36 36 H 1.08010 * 125.89562 * 180.02562 * 17 16 15 37 37 H 1.09006 * 113.61274 * 334.56601 * 19 8 7 38 38 H 1.09000 * 113.61816 * 105.46923 * 19 8 7 39 39 H 1.08000 * 126.83389 * 180.28414 * 20 4 3 40 40 H 1.08999 * 109.47345 * 89.69482 * 22 21 20 41 41 H 0.96700 * 114.00311 * 60.00230 * 23 22 21 42 42 H 1.48501 * 109.99918 * 58.68485 * 24 22 21 43 43 H 1.48506 * 109.99973 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1052 0.0000 4 6 3.5462 0.7177 0.0006 5 6 4.7284 1.5959 0.0003 6 8 5.8447 1.1129 0.0004 7 7 4.5734 2.9347 -0.0002 8 6 5.7493 3.8082 -0.0011 9 1 6.6373 3.3231 0.4041 10 6 5.9906 4.5153 -1.3453 11 6 6.3666 5.7646 -0.5312 12 1 7.4239 5.8162 -0.2714 13 6 5.8378 7.0690 -1.1309 14 7 6.8032 7.5856 -2.1042 15 6 6.5451 7.8909 -3.3931 16 6 7.6957 8.3346 -3.9502 17 6 8.6909 8.2997 -2.9679 18 7 8.1557 7.8565 -1.8594 19 6 5.4827 5.2010 0.5940 20 6 3.5376 -0.7491 0.0069 21 6 2.2448 -1.1196 0.0007 22 6 1.7399 -2.5396 0.0009 23 8 0.4812 -2.5976 -0.6732 24 14 2.9653 -3.6346 -0.8765 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5137 28 1 1.8766 2.1241 -0.0004 29 1 3.6830 3.3199 -0.0006 30 1 6.8215 4.0988 -1.9147 31 1 5.0868 4.6387 -1.9420 32 1 4.8861 6.8809 -1.6278 33 1 5.6945 7.8021 -0.3371 34 1 5.5913 7.7975 -3.8909 35 1 7.8232 8.6585 -4.9726 36 1 9.7220 8.5929 -3.1004 37 1 4.4400 5.5119 0.5274 38 1 5.9035 5.3381 1.5901 39 1 4.3981 -1.4016 0.0132 40 1 1.6178 -2.8816 1.0287 41 1 0.5148 -2.3069 -1.5948 42 1 4.2871 -3.5584 -0.2040 43 1 2.4787 -5.0376 -0.8836 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:51 Heat of formation + Delta-G solvation = 96.346561 kcal Electronic energy + Delta-G solvation = -25499.913341 eV Core-core repulsion = 21743.631178 eV Total energy + Delta-G solvation = -3756.282163 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48060 -42.02945 -40.89224 -39.24717 -37.80432 -35.11721 -33.83849 -33.40725 -31.38974 -30.93247 -28.61031 -27.45757 -26.72815 -26.34816 -24.58412 -23.07796 -22.01899 -21.51478 -21.24331 -20.72669 -20.21017 -18.94390 -18.24333 -17.41092 -17.22124 -16.83926 -16.74268 -16.30139 -16.11509 -15.78148 -15.47702 -15.41477 -15.26373 -14.90652 -14.68988 -14.48557 -14.14653 -14.08407 -13.64362 -13.48428 -13.45518 -13.29538 -13.24738 -13.01759 -12.83545 -12.29850 -12.15519 -12.10106 -11.84088 -11.53315 -11.44282 -11.01235 -10.70406 -10.31143 -10.09852 -9.57747 -9.45235 -9.22579 -5.01372 0.72812 1.01140 1.03238 1.37039 1.61734 1.69936 1.88344 1.97642 2.05446 2.29023 2.51760 3.28598 3.41280 3.51957 3.52423 3.57969 3.79991 3.88049 3.94530 3.98002 4.11315 4.19252 4.31238 4.38757 4.40653 4.43280 4.52515 4.53640 4.63914 4.69783 4.77486 4.81197 4.85747 4.93135 4.94887 4.99350 5.00696 5.05096 5.18001 5.27728 5.56338 5.63825 5.77219 5.95247 6.22694 6.24717 6.58409 6.65940 6.80688 7.34381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.420 5.420 3 C 0.080 3.920 4 C -0.262 4.262 5 C 0.586 3.414 6 O -0.603 6.603 7 N -0.700 5.700 8 C 0.118 3.882 9 H 0.080 0.920 10 C -0.138 4.138 11 C -0.116 4.116 12 H 0.077 0.923 13 C 0.141 3.859 14 N -0.375 5.375 15 C 0.055 3.945 16 C -0.295 4.295 17 C 0.027 3.973 18 N -0.340 5.340 19 C -0.115 4.115 20 C -0.170 4.170 21 C -0.014 4.014 22 C -0.032 4.032 23 O -0.543 6.543 24 Si 0.784 3.216 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.215 0.785 29 H 0.417 0.583 30 H 0.042 0.958 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.209 0.791 35 H 0.160 0.840 36 H 0.194 0.806 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.398 0.602 42 H -0.302 1.302 43 H -0.284 1.284 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 4.167 -3.733 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.094 5.094 3 C -0.058 4.058 4 C -0.272 4.272 5 C 0.376 3.624 6 O -0.485 6.485 7 N -0.351 5.351 8 C 0.012 3.988 9 H 0.099 0.901 10 C -0.177 4.177 11 C -0.135 4.135 12 H 0.096 0.904 13 C 0.021 3.979 14 N -0.158 5.158 15 C -0.091 4.091 16 C -0.324 4.324 17 C -0.158 4.158 18 N -0.163 5.163 19 C -0.154 4.154 20 C -0.195 4.195 21 C -0.124 4.124 22 C -0.143 4.143 23 O -0.352 6.352 24 Si 0.690 3.310 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.231 0.769 29 H 0.255 0.745 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.111 0.889 34 H 0.225 0.775 35 H 0.178 0.822 36 H 0.210 0.790 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.249 0.751 42 H -0.230 1.230 43 H -0.210 1.210 Dipole moment (debyes) X Y Z Total from point charges -10.770 2.546 -1.764 11.206 hybrid contribution 0.321 0.419 -0.110 0.539 sum -10.449 2.965 -1.874 11.022 Atomic orbital electron populations 1.22809 0.74100 1.07715 1.04828 1.43735 1.08190 1.04278 1.53192 1.22454 0.88607 0.93440 1.01297 1.20271 0.92478 0.93477 1.20997 1.17812 0.87737 0.82565 0.74267 1.90757 1.28212 1.76382 1.53189 1.45575 1.10140 1.04457 1.74956 1.22350 0.89326 0.89518 0.97567 0.90133 1.23540 1.02076 0.95329 0.96750 1.22521 1.00356 0.93031 0.97633 0.90442 1.22028 0.89738 0.94729 0.91418 1.48981 1.07530 1.49702 1.09553 1.23195 1.01849 0.98899 0.85169 1.21872 0.92886 1.15187 1.02491 1.24308 1.01566 0.99066 0.90875 1.77271 0.90943 1.23235 1.24836 1.23316 1.02092 0.91877 0.98100 1.21725 0.95468 0.94025 1.08260 1.20713 0.89993 0.90072 1.11630 1.24639 0.93627 0.94071 1.02001 1.86428 1.28931 1.89159 1.30639 0.93253 0.73455 0.75450 0.88829 0.90779 0.87159 0.86426 0.76873 0.74507 0.93877 0.87153 0.84894 0.88886 0.77461 0.82222 0.78965 0.85641 0.90262 0.85442 0.86797 0.75093 1.22951 1.21049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.48 10.71 127.77 1.37 0.89 16 2 N -0.42 1.85 3.09 -533.23 -1.65 0.21 16 3 C 0.08 -0.38 10.83 83.92 0.91 0.53 16 4 C -0.26 -1.15 6.29 -19.04 -0.12 -1.27 16 5 C 0.59 4.97 7.81 86.62 0.68 5.65 16 6 O -0.60 -11.90 16.57 -4.12 -0.07 -11.97 16 7 N -0.70 0.74 5.34 -443.46 -2.37 -1.63 16 8 C 0.12 0.06 4.24 45.52 0.19 0.26 16 9 H 0.08 0.67 7.46 -2.39 -0.02 0.65 16 10 C -0.14 0.15 7.43 31.13 0.23 0.39 16 11 C -0.12 0.28 3.87 -10.26 -0.04 0.24 16 12 H 0.08 0.34 7.97 -2.39 -0.02 0.33 16 13 C 0.14 -0.73 6.35 86.38 0.55 -0.18 16 14 N -0.38 -0.85 3.68 -348.07 -1.28 -2.13 16 15 C 0.06 -0.04 11.45 83.54 0.96 0.92 16 16 C -0.30 -0.67 10.80 21.99 0.24 -0.43 16 17 C 0.03 0.16 12.02 85.24 1.02 1.18 16 18 N -0.34 -3.03 12.28 -57.02 -0.70 -3.73 16 19 C -0.12 0.73 7.39 31.12 0.23 0.96 16 20 C -0.17 -1.12 9.50 23.62 0.22 -0.90 16 21 C -0.01 0.00 6.13 40.99 0.25 0.25 16 22 C -0.03 0.07 2.98 71.24 0.21 0.28 16 23 O -0.54 3.16 9.95 -148.98 -1.48 1.67 16 24 Si 0.78 -0.54 31.30 68.60 2.15 1.60 16 25 H 0.07 -0.74 8.14 -2.39 -0.02 -0.75 16 26 H 0.11 -1.75 8.13 -2.39 -0.02 -1.77 16 27 H 0.12 -1.31 4.94 -2.39 -0.01 -1.32 16 28 H 0.21 -3.12 7.45 -2.91 -0.02 -3.15 16 29 H 0.42 -4.11 7.67 -92.70 -0.71 -4.82 16 30 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.11 -0.68 7.90 -2.39 -0.02 -0.70 16 32 H 0.13 -1.68 7.77 -2.39 -0.02 -1.70 16 33 H 0.09 -0.57 8.14 -2.39 -0.02 -0.58 16 34 H 0.21 -1.93 8.06 -2.91 -0.02 -1.95 16 35 H 0.16 -0.26 8.06 -2.91 -0.02 -0.29 16 36 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.13 -1.66 8.08 -2.38 -0.02 -1.68 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.13 1.33 6.68 -2.91 -0.02 1.31 16 40 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 41 H 0.40 -5.33 8.38 -74.06 -0.62 -5.95 16 42 H -0.30 -2.33 6.77 99.48 0.67 -1.65 16 43 H -0.28 -1.29 7.11 99.48 0.71 -0.59 16 Total: 0.00 -33.20 361.03 1.22 -31.98 By element: Atomic # 1 Polarization: -24.49 SS G_CDS: -0.28 Total: -24.77 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.90 Total: 8.77 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -6.00 Total: -7.27 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.55 Total: -10.30 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.15 Total: 1.60 kcal Total: -33.20 1.22 -31.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.323 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds