Wall clock time and date at job start Sun Mar 7 2021 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38978 * 119.95649 * 2 1 4 4 O 1.35705 * 119.90883 * 359.96638 * 3 2 1 5 5 C 1.39019 * 120.17237 * 179.97438 * 3 2 1 6 6 C 1.50702 * 119.94923 * 180.02562 * 5 3 2 7 7 O 1.42892 * 109.47386 * 285.02015 * 6 5 3 8 8 Si 1.86303 * 109.46724 * 165.01779 * 6 5 3 9 9 C 1.37679 * 120.09292 * 0.03753 * 5 3 2 10 10 C 1.39752 * 119.91156 * 359.97438 * 9 5 3 11 11 C 1.47602 * 120.08688 * 180.02562 * 10 9 5 12 12 O 1.21579 * 120.00112 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99774 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99635 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85608 * 25.33506 * 14 13 11 16 16 C 1.53785 * 113.61419 * 156.53238 * 14 13 11 17 17 C 1.53779 * 87.08419 * 139.98037 * 16 14 13 18 18 H 1.08999 * 113.61504 * 89.11330 * 17 16 14 19 19 C 1.53005 * 113.61152 * 219.93880 * 17 16 14 20 20 N 1.46502 * 109.46663 * 185.00122 * 19 17 16 21 21 C 1.34945 * 126.03702 * 124.71802 * 20 19 17 22 22 C 1.35325 * 107.74246 * 179.83301 * 21 20 19 23 23 C 1.39865 * 107.92048 * 0.42191 * 22 21 20 24 24 N 1.30837 * 108.20550 * 359.73491 * 23 22 21 25 25 C 1.53784 * 113.61384 * 254.13439 * 14 13 11 26 26 C 1.37725 * 119.95520 * 180.26784 * 2 1 3 27 27 H 1.09005 * 109.46872 * 90.00870 * 1 2 3 28 28 H 1.09002 * 109.47412 * 210.00107 * 1 2 3 29 29 H 1.09001 * 109.47434 * 330.00946 * 1 2 3 30 30 H 0.96703 * 114.00796 * 269.98006 * 4 3 2 31 31 H 1.09002 * 109.47002 * 45.02458 * 6 5 3 32 32 H 0.96708 * 114.00219 * 180.02562 * 7 6 5 33 33 H 1.48503 * 109.99722 * 60.00462 * 8 6 5 34 34 H 1.48507 * 109.99715 * 181.31729 * 8 6 5 35 35 H 1.08003 * 120.04414 * 179.97438 * 9 5 3 36 36 H 0.96995 * 120.00015 * 359.72389 * 13 11 10 37 37 H 1.09004 * 113.61282 * 254.52957 * 16 14 13 38 38 H 1.08996 * 113.61013 * 25.42872 * 16 14 13 39 39 H 1.09004 * 109.46767 * 304.99164 * 19 17 16 40 40 H 1.09001 * 109.47232 * 64.99978 * 19 17 16 41 41 H 1.07999 * 126.12963 * 359.97438 * 21 20 19 42 42 H 1.08000 * 126.03580 * 180.15467 * 22 21 20 43 43 H 1.07999 * 125.89552 * 179.71545 * 23 22 21 44 44 H 1.08999 * 113.61705 * 334.57508 * 25 14 13 45 45 H 1.09004 * 113.61473 * 105.47079 * 25 14 13 46 46 H 1.07998 * 120.05012 * 0.02749 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3777 -0.0007 5 6 3.5911 1.2093 0.0005 6 6 4.3385 2.5180 0.0011 7 8 4.2721 3.1051 -1.2999 8 14 6.1197 2.2154 0.4558 9 6 4.2859 0.0207 0.0003 10 6 3.5918 -1.1922 0.0000 11 6 4.3328 -2.4688 0.0004 12 8 5.5486 -2.4660 0.0003 13 7 3.6616 -3.6376 0.0006 14 6 4.3970 -4.9045 0.0004 15 1 5.3948 -4.8149 0.4298 16 6 3.5887 -6.0862 0.5618 17 6 4.2040 -6.9386 -0.5605 18 1 5.1496 -7.4058 -0.2854 19 6 3.2176 -7.9216 -1.1944 20 7 3.9230 -8.7649 -2.1627 21 6 3.9517 -10.1140 -2.1680 22 6 4.7049 -10.5063 -3.2216 23 6 5.1597 -9.3575 -3.8770 24 7 4.6917 -8.3129 -3.2432 25 6 4.3726 -5.6307 -1.3550 26 6 2.1947 -1.1933 -0.0056 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8901 0.5137 30 1 1.3228 2.7179 -0.8843 31 1 3.8877 3.1935 0.7281 32 1 4.7334 3.9518 -1.3734 33 1 6.7458 1.2957 -0.5277 34 1 6.8605 3.5021 0.4910 35 1 5.3659 0.0257 0.0003 36 1 2.6916 -3.6398 0.0047 37 1 3.8982 -6.3912 1.5615 38 1 2.5099 -5.9590 0.4721 39 1 2.7798 -8.5486 -0.4176 40 1 2.4282 -7.3675 -1.7022 41 1 3.4596 -10.7642 -1.4598 42 1 4.9205 -11.5263 -3.5037 43 1 5.7890 -9.3363 -4.7545 44 1 3.5085 -5.3788 -1.9699 45 1 5.3141 -5.5685 -1.9007 46 1 1.6547 -2.1286 -0.0104 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:55 Heat of formation + Delta-G solvation = 25.298635 kcal Electronic energy + Delta-G solvation = -29129.141298 eV Core-core repulsion = 24988.295844 eV Total energy + Delta-G solvation = -4140.845454 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06509 -41.74999 -40.81229 -39.48175 -37.92248 -37.52366 -35.30243 -34.12628 -33.61855 -31.78538 -30.92374 -28.53922 -27.98823 -26.89897 -26.72047 -25.38403 -23.53029 -22.01744 -21.90979 -21.65874 -21.44932 -20.61103 -19.49805 -18.68691 -18.52267 -18.27719 -17.77662 -16.90120 -16.65799 -16.51721 -16.12155 -16.09062 -15.66056 -15.53418 -15.23449 -15.05160 -14.85087 -14.75877 -14.29128 -14.05227 -13.97797 -13.70405 -13.56231 -13.52452 -13.46835 -13.40397 -13.05131 -12.96253 -12.84485 -12.61907 -12.23638 -11.99870 -11.85335 -11.61331 -11.50116 -11.37363 -11.10857 -10.56775 -10.33501 -10.20094 -9.97925 -9.66005 -9.47738 -5.04811 -0.42093 0.04978 1.02234 1.16998 1.45202 1.55778 1.69519 1.82784 1.96457 2.02762 2.50339 3.12025 3.22627 3.34253 3.44867 3.52924 3.64001 3.68018 3.72287 3.77114 3.98302 3.99483 4.10012 4.14985 4.22069 4.31166 4.34660 4.38753 4.44725 4.62117 4.69834 4.70434 4.74122 4.78494 4.81813 4.82986 4.93069 4.98838 5.03348 5.05102 5.08492 5.16531 5.18518 5.21133 5.31584 5.50693 5.59314 5.76219 6.21628 6.42340 6.49665 6.67681 6.80446 7.09071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C 0.156 3.844 4 O -0.494 6.494 5 C -0.117 4.117 6 C -0.063 4.063 7 O -0.552 6.552 8 Si 0.736 3.264 9 C -0.068 4.068 10 C -0.152 4.152 11 C 0.558 3.442 12 O -0.583 6.583 13 N -0.697 5.697 14 C 0.114 3.886 15 H 0.091 0.909 16 C -0.111 4.111 17 C -0.111 4.111 18 H 0.082 0.918 19 C 0.139 3.861 20 N -0.377 5.377 21 C 0.054 3.946 22 C -0.294 4.294 23 C 0.024 3.976 24 N -0.332 5.332 25 C -0.136 4.136 26 C -0.053 4.053 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.411 0.589 31 H 0.099 0.901 32 H 0.397 0.603 33 H -0.308 1.308 34 H -0.271 1.271 35 H 0.125 0.875 36 H 0.417 0.583 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.209 0.791 42 H 0.159 0.841 43 H 0.191 0.809 44 H 0.092 0.908 45 H 0.041 0.959 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -2.926 4.156 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C 0.110 3.890 4 O -0.307 6.307 5 C -0.118 4.118 6 C -0.173 4.173 7 O -0.362 6.362 8 Si 0.643 3.357 9 C -0.087 4.087 10 C -0.155 4.155 11 C 0.347 3.653 12 O -0.464 6.464 13 N -0.348 5.348 14 C 0.009 3.991 15 H 0.109 0.891 16 C -0.149 4.149 17 C -0.131 4.131 18 H 0.100 0.900 19 C 0.019 3.981 20 N -0.159 5.159 21 C -0.092 4.092 22 C -0.323 4.323 23 C -0.162 4.162 24 N -0.155 5.155 25 C -0.175 4.175 26 C -0.071 4.071 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.272 0.728 31 H 0.117 0.883 32 H 0.248 0.752 33 H -0.237 1.237 34 H -0.197 1.197 35 H 0.143 0.857 36 H 0.257 0.743 37 H 0.111 0.889 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.225 0.775 42 H 0.177 0.823 43 H 0.208 0.792 44 H 0.110 0.890 45 H 0.060 0.940 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.763 -2.069 4.551 9.233 hybrid contribution 0.412 0.216 -1.783 1.843 sum -7.350 -1.853 2.768 8.070 Atomic orbital electron populations 1.20775 0.87838 1.04486 1.03611 1.20465 0.98535 0.91532 1.01385 1.18418 0.88465 0.86184 0.95906 1.84603 1.75357 1.35555 1.35210 1.19601 0.93791 0.93785 1.04615 1.24569 1.09964 0.94407 0.88377 1.86489 1.77961 1.41755 1.29992 0.94107 0.73738 0.78880 0.89001 1.21066 1.00186 0.91325 0.96105 1.19797 0.94601 0.92369 1.08761 1.18453 0.86770 0.84819 0.75295 1.90786 1.15599 1.88192 1.51838 1.45729 1.10878 1.04376 1.73831 1.22554 0.97278 0.81681 0.97602 0.89126 1.23299 1.01571 0.91541 0.98524 1.22524 0.99390 0.93980 0.97161 0.89954 1.22046 0.93151 0.93285 0.89646 1.49019 1.39131 1.05283 1.22510 1.23211 1.00368 0.85114 1.00553 1.21864 1.09064 1.00537 1.00872 1.24305 1.00313 0.90776 1.00757 1.77337 1.12827 1.24492 1.00815 1.23457 1.02076 0.95424 0.96525 1.21389 0.91310 0.99283 0.95144 0.89909 0.89206 0.90876 0.72826 0.88313 0.75215 1.23683 1.19731 0.85749 0.74341 0.88862 0.85999 0.84862 0.88816 0.77481 0.82294 0.79184 0.88994 0.93996 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.73 9.78 71.23 0.70 1.43 16 2 C -0.12 0.19 5.89 -19.81 -0.12 0.07 16 3 C 0.16 0.30 6.66 22.63 0.15 0.45 16 4 O -0.49 0.23 11.84 -90.25 -1.07 -0.84 16 5 C -0.12 -0.56 5.30 -19.81 -0.11 -0.67 16 6 C -0.06 -0.15 2.36 71.24 0.17 0.02 16 7 O -0.55 -1.48 12.86 -148.98 -1.92 -3.39 16 8 Si 0.74 2.70 30.19 68.60 2.07 4.77 16 9 C -0.07 -0.52 8.20 22.50 0.18 -0.33 16 10 C -0.15 -0.69 5.87 -20.08 -0.12 -0.81 16 11 C 0.56 4.12 7.76 86.71 0.67 4.80 16 12 O -0.58 -9.97 15.96 -3.96 -0.06 -10.03 16 13 N -0.70 0.74 5.31 -443.13 -2.35 -1.61 16 14 C 0.11 -0.03 4.21 45.52 0.19 0.16 16 15 H 0.09 0.51 7.50 -2.39 -0.02 0.49 16 16 C -0.11 0.94 7.39 31.12 0.23 1.17 16 17 C -0.11 0.42 3.82 -10.21 -0.04 0.38 16 18 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 19 C 0.14 -0.81 6.35 86.38 0.55 -0.26 16 20 N -0.38 -0.67 3.68 -348.04 -1.28 -1.95 16 21 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 22 C -0.29 -0.63 10.80 21.99 0.24 -0.39 16 23 C 0.02 0.13 12.02 85.24 1.02 1.16 16 24 N -0.33 -2.78 12.42 -57.03 -0.71 -3.49 16 25 C -0.14 -0.17 7.45 31.18 0.23 0.07 16 26 C -0.05 0.13 9.18 22.51 0.21 0.34 16 27 H 0.08 -0.67 8.14 -2.38 -0.02 -0.69 16 28 H 0.09 -0.89 8.08 -2.39 -0.02 -0.91 16 29 H 0.07 -0.36 7.52 -2.39 -0.02 -0.38 16 30 H 0.41 -2.77 9.06 -74.06 -0.67 -3.44 16 31 H 0.10 -0.08 7.82 -2.39 -0.02 -0.10 16 32 H 0.40 -2.01 8.74 -74.05 -0.65 -2.66 16 33 H -0.31 -4.10 6.75 99.48 0.67 -3.43 16 34 H -0.27 -1.55 7.11 99.48 0.71 -0.84 16 35 H 0.12 1.36 4.47 -2.91 -0.01 1.34 16 36 H 0.42 -3.70 6.73 -92.71 -0.62 -4.32 16 37 H 0.09 -0.88 8.14 -2.38 -0.02 -0.90 16 38 H 0.12 -1.72 8.07 -2.39 -0.02 -1.74 16 39 H 0.13 -1.70 8.07 -2.38 -0.02 -1.71 16 40 H 0.09 -0.66 7.86 -2.39 -0.02 -0.68 16 41 H 0.21 -1.92 8.06 -2.91 -0.02 -1.95 16 42 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.09 -0.01 7.91 -2.39 -0.02 -0.03 16 45 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 46 H 0.17 -1.78 6.39 -2.91 -0.02 -1.80 16 Total: 0.00 -30.45 385.60 -1.09 -31.54 By element: Atomic # 1 Polarization: -22.59 SS G_CDS: -0.89 Total: -23.48 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.12 Total: 8.48 kcal Atomic # 7 Polarization: -2.71 SS G_CDS: -4.34 Total: -7.05 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -3.05 Total: -14.27 kcal Atomic # 14 Polarization: 2.70 SS G_CDS: 2.07 Total: 4.77 kcal Total: -30.45 -1.09 -31.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.837 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds