Wall clock time and date at job start Sun Mar 7 2021 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46873 * 2 1 4 4 C 1.50695 * 109.47157 * 119.99876 * 2 1 3 5 5 C 1.34850 * 125.89919 * 218.18268 * 4 2 1 6 6 C 1.40946 * 107.47062 * 180.02562 * 5 4 2 7 7 C 1.34855 * 107.46320 * 359.75450 * 6 5 4 8 8 N 1.36573 * 125.89906 * 38.21480 * 4 2 1 9 9 C 1.40197 * 125.66823 * 359.94804 * 8 4 2 10 10 C 1.38827 * 120.06477 * 236.38687 * 9 8 4 11 11 C 1.38122 * 119.93383 * 180.02562 * 10 9 8 12 12 C 1.38274 * 120.06673 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.93763 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47229 * 90.00004 * 13 12 11 15 15 O 1.21285 * 119.99750 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00388 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00405 * 179.97438 * 16 14 13 18 18 H 1.09004 * 112.90529 * 23.75452 * 17 16 14 19 19 C 1.53778 * 113.61581 * 155.00086 * 17 16 14 20 20 C 1.53780 * 87.17431 * 140.02649 * 19 17 16 21 21 H 1.09002 * 113.61105 * 89.07662 * 20 19 17 22 22 C 1.52997 * 113.61414 * 219.97766 * 20 19 17 23 23 N 1.46500 * 109.46698 * 184.99890 * 22 20 19 24 24 C 1.34951 * 126.03223 * 125.00045 * 23 22 20 25 25 C 1.35317 * 107.74666 * 179.97438 * 24 23 22 26 26 C 1.39874 * 107.91872 * 0.02562 * 25 24 23 27 27 N 1.30843 * 108.20146 * 359.73998 * 26 25 24 28 28 C 1.53779 * 87.07959 * 334.52783 * 20 19 17 29 29 C 1.38281 * 120.13042 * 0.23421 * 12 11 10 30 30 C 1.38126 * 120.06419 * 359.49636 * 29 12 11 31 31 H 0.96703 * 114.00095 * 305.21834 * 1 2 3 32 32 H 1.08996 * 109.46660 * 240.00413 * 2 1 3 33 33 H 1.48503 * 109.99974 * 178.68340 * 3 2 1 34 34 H 1.48506 * 110.00130 * 300.00236 * 3 2 1 35 35 H 1.07997 * 126.26603 * 359.97438 * 5 4 2 36 36 H 1.07994 * 126.27031 * 179.97438 * 6 5 4 37 37 H 1.07997 * 125.89964 * 180.23090 * 7 6 5 38 38 H 1.08000 * 120.03522 * 0.02562 * 10 9 8 39 39 H 1.08004 * 119.96751 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.46904 * 330.00180 * 13 12 11 41 41 H 1.08997 * 109.47377 * 210.00212 * 13 12 11 42 42 H 0.97002 * 119.99755 * 0.02562 * 16 14 13 43 43 H 1.09000 * 113.61378 * 25.43476 * 19 17 16 44 44 H 1.09001 * 113.61625 * 254.62415 * 19 17 16 45 45 H 1.09002 * 109.46958 * 304.99988 * 22 20 19 46 46 H 1.08997 * 109.47202 * 65.00011 * 22 20 19 47 47 H 1.08004 * 126.13075 * 0.02562 * 24 23 22 48 48 H 1.07996 * 126.04534 * 180.02562 * 25 24 23 49 49 H 1.07996 * 125.90276 * 179.97438 * 26 25 24 50 50 H 1.09003 * 113.61449 * 139.97806 * 28 20 19 51 51 H 1.09003 * 113.61649 * 270.88438 * 28 20 19 52 52 H 1.07996 * 119.96984 * 179.74312 * 29 12 11 53 53 H 1.07995 * 120.03445 * 180.25414 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 3.0045 -0.3552 1.9658 6 6 3.1204 -1.2828 3.0207 7 6 2.1105 -2.1676 2.8943 8 7 1.3788 -1.8254 1.7931 9 6 0.2452 -2.5026 1.3220 10 6 -0.8454 -2.6987 2.1584 11 6 -1.9606 -3.3666 1.6917 12 6 -1.9913 -3.8403 0.3930 13 6 -3.2094 -4.5692 -0.1131 14 6 -4.1717 -3.5797 -0.7181 15 8 -3.8953 -2.3990 -0.7370 16 7 -5.3394 -4.0069 -1.2382 17 6 -6.2751 -3.0450 -1.8259 18 1 -5.7878 -2.1288 -2.1596 19 6 -7.2135 -3.6615 -2.8766 20 6 -8.3300 -2.7877 -2.2812 21 1 -8.4036 -1.8013 -2.7392 22 6 -9.6800 -3.5010 -2.1831 23 7 -10.6989 -2.5560 -1.7192 24 6 -11.8621 -2.2736 -2.3424 25 6 -12.5182 -1.3560 -1.5951 26 6 -11.7286 -1.0673 -0.4771 27 7 -10.6402 -1.7900 -0.5479 28 6 -7.5304 -2.7989 -0.9677 29 6 -0.9045 -3.6512 -0.4408 30 6 0.2114 -2.9791 0.0186 31 1 -0.3933 0.5095 0.7217 32 1 1.7923 -0.5138 -0.8900 33 1 3.5346 1.7703 0.0321 34 1 1.5614 2.4679 -1.2085 35 1 3.6563 0.4856 1.7800 36 1 3.8770 -1.2827 3.7913 37 1 1.9158 -3.0040 3.5491 38 1 -0.8218 -2.3293 3.1730 39 1 -2.8095 -3.5191 2.3417 40 1 -3.6933 -5.0867 0.7153 41 1 -2.9105 -5.2946 -0.8697 42 1 -5.5605 -4.9512 -1.2228 43 1 -7.3771 -4.7307 -2.7421 44 1 -6.9533 -3.3990 -3.9020 45 1 -9.9602 -3.8849 -3.1640 46 1 -9.6034 -4.3281 -1.4774 47 1 -12.2079 -2.7036 -3.2708 48 1 -13.4813 -0.9230 -1.8216 49 1 -11.9764 -0.3712 0.3105 50 1 -7.5252 -1.8388 -0.4515 51 1 -7.7807 -3.6323 -0.3112 52 1 -0.9297 -4.0259 -1.4534 53 1 1.0583 -2.8281 -0.6343 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:59 Heat of formation + Delta-G solvation = 131.002818 kcal Electronic energy + Delta-G solvation = -35084.055670 eV Core-core repulsion = 30505.296515 eV Total energy + Delta-G solvation = -4578.759155 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.70041 -42.04304 -41.25130 -40.13600 -39.15095 -37.73725 -35.10598 -34.86397 -33.52692 -32.16866 -31.77483 -31.07376 -30.93275 -28.74504 -27.63170 -26.69937 -26.07819 -24.39896 -23.98124 -23.10207 -21.91475 -21.68458 -21.46608 -21.42094 -20.69354 -20.54487 -19.27496 -18.28093 -18.04161 -17.54423 -17.32130 -17.08510 -16.49439 -16.48127 -16.24719 -15.82711 -15.79352 -15.58919 -15.39936 -15.24315 -14.88501 -14.82960 -14.66317 -14.51646 -14.42593 -14.23878 -13.98763 -13.94105 -13.56302 -13.48300 -13.44534 -13.37457 -13.25819 -13.07854 -12.84601 -12.62898 -12.21604 -12.17595 -12.05845 -11.96941 -11.83548 -11.61021 -11.35412 -10.97207 -10.76727 -10.33401 -10.24636 -10.02502 -10.00255 -9.47994 -9.24979 -9.10730 -5.00978 -0.00190 0.32997 1.01930 1.05004 1.30691 1.60145 1.62854 1.69463 1.81790 1.95420 1.96516 2.07177 2.18475 2.71491 3.35111 3.35816 3.46976 3.60568 3.65486 3.66860 3.73487 3.77979 3.86597 3.98102 4.01329 4.09410 4.12590 4.22569 4.23976 4.30513 4.33371 4.36772 4.39450 4.47836 4.50871 4.59504 4.62255 4.70295 4.73560 4.77756 4.81594 4.83518 4.92753 4.94435 5.00680 5.05165 5.16898 5.17874 5.18851 5.22005 5.24793 5.33974 5.48524 5.58714 5.76485 5.77878 5.91517 6.15935 6.20752 6.48546 6.57281 6.58172 6.80333 7.29912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.057 4.057 3 Si 0.805 3.195 4 C -0.021 4.021 5 C -0.202 4.202 6 C -0.200 4.200 7 C -0.014 4.014 8 N -0.395 5.395 9 C 0.119 3.881 10 C -0.120 4.120 11 C -0.096 4.096 12 C -0.067 4.067 13 C -0.097 4.097 14 C 0.510 3.490 15 O -0.580 6.580 16 N -0.707 5.707 17 C 0.117 3.883 18 H 0.083 0.917 19 C -0.114 4.114 20 C -0.113 4.113 21 H 0.079 0.921 22 C 0.139 3.861 23 N -0.377 5.377 24 C 0.052 3.948 25 C -0.294 4.294 26 C 0.025 3.975 27 N -0.331 5.331 28 C -0.132 4.132 29 C -0.099 4.099 30 C -0.110 4.110 31 H 0.386 0.614 32 H 0.099 0.901 33 H -0.275 1.275 34 H -0.293 1.293 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.419 0.581 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.094 0.906 47 H 0.207 0.793 48 H 0.159 0.841 49 H 0.193 0.807 50 H 0.040 0.960 51 H 0.093 0.907 52 H 0.137 0.863 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -7.033 -1.325 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.166 4.166 3 Si 0.708 3.292 4 C -0.131 4.131 5 C -0.227 4.227 6 C -0.223 4.223 7 C -0.142 4.142 8 N -0.068 5.068 9 C 0.029 3.971 10 C -0.139 4.139 11 C -0.115 4.115 12 C -0.067 4.067 13 C -0.137 4.137 14 C 0.298 3.702 15 O -0.459 6.459 16 N -0.359 5.359 17 C 0.011 3.989 18 H 0.102 0.898 19 C -0.153 4.153 20 C -0.133 4.133 21 H 0.097 0.903 22 C 0.019 3.981 23 N -0.159 5.159 24 C -0.094 4.094 25 C -0.323 4.323 26 C -0.161 4.161 27 N -0.153 5.153 28 C -0.171 4.171 29 C -0.117 4.117 30 C -0.129 4.129 31 H 0.235 0.765 32 H 0.117 0.883 33 H -0.201 1.201 34 H -0.221 1.221 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.198 0.802 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.257 0.743 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.148 0.852 46 H 0.112 0.888 47 H 0.224 0.776 48 H 0.177 0.823 49 H 0.209 0.791 50 H 0.059 0.941 51 H 0.112 0.888 52 H 0.155 0.845 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.220 -6.562 -1.884 7.548 hybrid contribution -0.610 -0.238 -0.442 0.790 sum -3.830 -6.800 -2.326 8.144 Atomic orbital electron populations 1.86542 1.17268 1.76731 1.54947 1.25035 0.85245 1.11605 0.94753 0.93003 0.78033 0.73880 0.84291 1.21223 0.99149 0.92164 1.00566 1.20982 0.99689 1.03647 0.98374 1.21188 1.01491 0.97613 1.02055 1.22372 0.95484 1.03717 0.92601 1.41562 1.21414 1.21312 1.22558 1.17712 0.86966 0.98065 0.94315 1.21147 0.92024 1.00388 1.00320 1.21106 0.97680 0.96890 0.95795 1.19584 0.94835 0.98517 0.93798 1.20773 0.91924 0.96918 1.04048 1.21088 0.82393 0.89395 0.77338 1.90771 1.76829 1.20050 1.58212 1.45850 1.18150 1.11737 1.60191 1.22419 0.87846 0.93524 0.95109 0.89848 1.23291 0.92130 1.01157 0.98698 1.22494 0.93067 0.99861 0.97855 0.90294 1.22024 0.84761 0.89155 1.02128 1.49003 1.16306 1.33677 1.16942 1.23204 0.87219 0.98709 1.00308 1.21862 1.04827 1.06965 0.98626 1.24317 0.92215 0.99427 1.00096 1.77324 1.23503 1.10507 1.03994 1.23437 0.95119 1.01794 0.96740 1.21027 0.92447 0.98279 0.99959 1.20936 0.99266 0.98188 0.94543 0.76511 0.88334 1.20082 1.22068 0.83142 0.82591 0.80244 0.84636 0.83711 0.84755 0.84933 0.74264 0.86151 0.89603 0.85179 0.88757 0.77626 0.82300 0.79051 0.94056 0.88820 0.84475 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.17 11.01 -148.98 -1.64 -5.81 16 2 C -0.06 -0.32 2.49 71.23 0.18 -0.14 16 3 Si 0.81 1.46 30.94 68.60 2.12 3.58 16 4 C -0.02 -0.15 6.12 41.04 0.25 0.10 16 5 C -0.20 -1.19 9.39 22.15 0.21 -0.98 16 6 C -0.20 -0.99 10.86 22.16 0.24 -0.75 16 7 C -0.01 -0.07 11.21 83.18 0.93 0.86 16 8 N -0.40 -2.86 2.84 -333.41 -0.95 -3.80 16 9 C 0.12 0.83 4.66 38.08 0.18 1.01 16 10 C -0.12 -0.52 9.77 22.38 0.22 -0.30 16 11 C -0.10 -0.23 9.69 22.25 0.22 -0.01 16 12 C -0.07 -0.13 4.38 -19.85 -0.09 -0.22 16 13 C -0.10 0.48 5.83 29.10 0.17 0.65 16 14 C 0.51 0.91 7.82 87.66 0.69 1.59 16 15 O -0.58 -7.69 15.64 -3.05 -0.05 -7.74 16 16 N -0.71 3.01 5.36 -439.61 -2.36 0.65 16 17 C 0.12 -0.15 4.25 45.61 0.19 0.05 16 18 H 0.08 0.48 7.47 -2.39 -0.02 0.46 16 19 C -0.11 0.94 7.38 31.12 0.23 1.17 16 20 C -0.11 0.42 3.83 -10.27 -0.04 0.38 16 21 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 22 C 0.14 -0.81 6.35 86.38 0.55 -0.26 16 23 N -0.38 -0.60 3.68 -348.06 -1.28 -1.88 16 24 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 25 C -0.29 -0.55 10.80 21.99 0.24 -0.31 16 26 C 0.02 0.13 12.03 85.24 1.03 1.15 16 27 N -0.33 -2.58 12.42 -57.02 -0.71 -3.29 16 28 C -0.13 -0.01 7.44 31.21 0.23 0.22 16 29 C -0.10 -0.43 9.69 22.25 0.22 -0.21 16 30 C -0.11 -0.81 8.62 22.38 0.19 -0.62 16 31 H 0.39 0.69 8.60 -74.06 -0.64 0.06 16 32 H 0.10 0.69 7.96 -2.39 -0.02 0.67 16 33 H -0.27 -1.42 6.86 99.48 0.68 -0.74 16 34 H -0.29 -2.39 7.11 99.48 0.71 -1.69 16 35 H 0.15 0.48 6.43 -2.91 -0.02 0.47 16 36 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 40 H 0.13 -1.42 8.08 -2.39 -0.02 -1.44 16 41 H 0.13 -1.37 8.08 -2.39 -0.02 -1.39 16 42 H 0.42 -5.00 8.73 -92.71 -0.81 -5.81 16 43 H 0.12 -1.65 8.08 -2.39 -0.02 -1.67 16 44 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.13 -1.59 8.07 -2.39 -0.02 -1.61 16 46 H 0.09 -0.68 7.84 -2.39 -0.02 -0.70 16 47 H 0.21 -1.86 8.06 -2.91 -0.02 -1.89 16 48 H 0.16 -0.30 8.06 -2.91 -0.02 -0.32 16 49 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 50 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.09 -0.16 7.90 -2.39 -0.02 -0.18 16 52 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 53 H 0.11 0.92 8.06 -2.91 -0.02 0.89 16 Total: 0.00 -30.59 444.11 1.63 -28.95 By element: Atomic # 1 Polarization: -14.46 SS G_CDS: -0.50 Total: -14.96 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.98 Total: 4.29 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -5.29 Total: -8.32 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -1.69 Total: -13.55 kcal Atomic # 14 Polarization: 1.46 SS G_CDS: 2.12 Total: 3.58 kcal Total: -30.59 1.63 -28.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.957 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds